RNA–Protein interactions for RNA: ENST00000444746.6

RIF1-205, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RIF1, Length 7,897 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-205ENST00000444746 DNHD1Q96M86 4753 aa3.57□□□□□ -1.84
RIF1-205ENST00000444746 DNAH11Q96DT5 4516 aa3.57□□□□□ -1.84
RIF1-205ENST00000444746 SRRM2Q9UQ35 2752 aaKnown RBP3.56□□□□□ -1.84
RIF1-205ENST00000444746 DYNC1H1Q14204 4646 aaKnown RBP3.56□□□□□ -1.84
RIF1-205ENST00000444746 MEGF8Q7Z7M0 2845 aa3.56□□□□□ -1.84
RIF1-205ENST00000444746 ALMS1Q8TCU4 4167 aa3.55□□□□□ -1.84
RIF1-205ENST00000444746 FAT1Q14517 4588 aa3.53□□□□□ -1.84
RIF1-205ENST00000444746 KRTAP4-1Q9BYQ7 146 aa3.51□□□□□ -1.85
RIF1-205ENST00000444746 DNAH8Q96JB1 4490 aa3.5□□□□□ -1.85
RIF1-205ENST00000444746 SACSQ9NZJ4 4579 aa3.5□□□□□ -1.85
RIF1-205ENST00000444746 LCE3AQ5TA76 89 aa3.49□□□□□ -1.85
RIF1-205ENST00000444746 DNAH17Q9UFH2 4485 aa3.49□□□□□ -1.85
RIF1-205ENST00000444746 KRTAP10-12P60413 245 aa3.47□□□□□ -1.85
RIF1-205ENST00000444746 LRP1BQ9NZR2 4599 aa3.46□□□□□ -1.86
RIF1-205ENST00000444746 RYR1P21817 5038 aa3.45□□□□□ -1.86
RIF1-205ENST00000444746 STARD9Q9P2P6 4700 aa3.45□□□□□ -1.86
RIF1-205ENST00000444746 VPS13DQ5THJ4 4388 aa3.43□□□□□ -1.86
RIF1-205ENST00000444746 COL7A1Q02388 2944 aa3.42□□□□□ -1.86
RIF1-205ENST00000444746 DNAH2Q9P225 4427 aa3.41□□□□□ -1.86
RIF1-205ENST00000444746 KRTAP12-3P60328 96 aa3.38□□□□□ -1.87
RIF1-205ENST00000444746 KIAA1109Q2LD37 5005 aa3.37□□□□□ -1.87
RIF1-205ENST00000444746 KRTAP17-1Q9BYP8 105 aa3.37□□□□□ -1.87
RIF1-205ENST00000444746 APOBP04114 4563 aaKnown RBP3.33□□□□□ -1.88
RIF1-205ENST00000444746 MT1HP80294 61 aa3.32□□□□□ -1.88
RIF1-205ENST00000444746 DYNC2H1Q8NCM8 4307 aaKnown RBP3.3□□□□□ -1.88
RIF1-205ENST00000444746 ANK2Q01484 3957 aa3.28□□□□□ -1.88
RIF1-205ENST00000444746 FAT2Q9NYQ8 4349 aa3.28□□□□□ -1.88
RIF1-205ENST00000444746 HYDINQ4G0P3 5121 aa3.27□□□□□ -1.89
RIF1-205ENST00000444746 KRTAP10-5P60370 271 aa3.26□□□□□ -1.89
RIF1-205ENST00000444746 RYR2Q92736 4967 aa3.25□□□□□ -1.89
RIF1-205ENST00000444746 KRTAP8-1Q8IUC2 63 aa3.25□□□□□ -1.89
RIF1-205ENST00000444746 MT2AP02795 61 aa3.25□□□□□ -1.89
RIF1-205ENST00000444746 RYR3Q15413 4870 aa3.25□□□□□ -1.89
RIF1-205ENST00000444746 MT1FP04733 61 aa3.24□□□□□ -1.89
RIF1-205ENST00000444746 DNAH3Q8TD57 4116 aa3.23□□□□□ -1.89
RIF1-205ENST00000444746 MYCBP2O75592 4640 aa3.22□□□□□ -1.89
RIF1-205ENST00000444746 KMT2AQ03164 3969 aa3.22□□□□□ -1.89
RIF1-205ENST00000444746 PRKDCP78527 4128 aaKnown RBP3.21□□□□□ -1.9
RIF1-205ENST00000444746 FRAS1Q86XX4 4008 aa3.21□□□□□ -1.9
RIF1-205ENST00000444746 FAT3Q8TDW7 4589 aa3.19□□□□□ -1.9
RIF1-205ENST00000444746 LRP1Q07954 4544 aaKnown RBP3.18□□□□□ -1.9
RIF1-205ENST00000444746 VPS13BQ7Z7G8 4022 aa3.14□□□□□ -1.91
RIF1-205ENST00000444746 LPAP08519 4548 aa3.14□□□□□ -1.91
RIF1-205ENST00000444746 KRTAP19-5Q3LI72 72 aa3.14□□□□□ -1.91
RIF1-205ENST00000444746 LYSTQ99698 3801 aa3.13□□□□□ -1.91
RIF1-205ENST00000444746 CMYA5Q8N3K9 4069 aa3.12□□□□□ -1.91
RIF1-205ENST00000444746 INE1O15225 51 aa3.11□□□□□ -1.91
RIF1-205ENST00000444746 SPRR2FQ96RM1 72 aa3.1□□□□□ -1.91
RIF1-205ENST00000444746 ABCA13Q86UQ4 5058 aa3.09□□□□□ -1.91
RIF1-205ENST00000444746 DNAH6Q9C0G6 4158 aa3.09□□□□□ -1.91
RIF1-205ENST00000444746 KRTAP10-7P60409 375 aaPredicted RBP3.08□□□□□ -1.92
RIF1-205ENST00000444746 BIRC6Q9NR09 4857 aa3.07□□□□□ -1.92
RIF1-205ENST00000444746 SPRR2GQ9BYE4 73 aa3.06□□□□□ -1.92
RIF1-205ENST00000444746 HSPG2P98160 4391 aa3.03□□□□□ -1.92
RIF1-205ENST00000444746 KRTAP23-1A1A580 65 aa3.03□□□□□ -1.92
RIF1-205ENST00000444746 DNAH7Q8WXX0 4024 aa3.02□□□□□ -1.93
RIF1-205ENST00000444746 HERC2O95714 4834 aa3.02□□□□□ -1.93
RIF1-205ENST00000444746 KRTAP4-8A0A0G2JLE6 195 aa3□□□□□ -1.93
RIF1-205ENST00000444746 KRTAP4-8Q9BYQ9 185 aa3□□□□□ -1.93
RIF1-205ENST00000444746 HERC1Q15751 4861 aa3□□□□□ -1.93
RIF1-205ENST00000444746 LRP2P98164 4655 aa2.98□□□□□ -1.93
RIF1-205ENST00000444746 KRTAP19-1Q8IUB9 90 aa2.97□□□□□ -1.93
RIF1-205ENST00000444746 LCE3CQ5T5A8 94 aa2.96□□□□□ -1.93
RIF1-205ENST00000444746 EPPK1P58107 5090 aaKnown RBP2.96□□□□□ -1.94
RIF1-205ENST00000444746 KMT2CQ8NEZ4 4911 aaKnown RBP2.95□□□□□ -1.94
RIF1-205ENST00000444746 MT1GP13640 62 aa2.93□□□□□ -1.94
RIF1-205ENST00000444746 MT1XP80297 61 aa2.92□□□□□ -1.94
RIF1-205ENST00000444746 PCLOQ9Y6V0 5065 aa2.92□□□□□ -1.94
RIF1-205ENST00000444746 MT1BP07438 61 aa2.91□□□□□ -1.94
RIF1-205ENST00000444746 LCE3BQ5TA77 95 aa2.91□□□□□ -1.94
RIF1-205ENST00000444746 SPRR2EP22531 72 aa2.9□□□□□ -1.95
RIF1-205ENST00000444746 SPRR2BP35325 72 aa2.9□□□□□ -1.95
RIF1-205ENST00000444746 SPRR2AP35326 72 aa2.9□□□□□ -1.95
RIF1-205ENST00000444746 KRTAP9-8Q9BYQ0 159 aa2.89□□□□□ -1.95
RIF1-205ENST00000444746 KRTAP4-7Q9BYR0 210 aa2.89□□□□□ -1.95
RIF1-205ENST00000444746 UBR4Q5T4S7 5183 aa2.89□□□□□ -1.95
RIF1-205ENST00000444746 LCE2CQ5TA81 110 aa2.89□□□□□ -1.95
RIF1-205ENST00000444746 PKD1P98161 4303 aa2.87□□□□□ -1.95
RIF1-205ENST00000444746 RNF213Q63HN8 5207 aa2.86□□□□□ -1.95
RIF1-205ENST00000444746 HMCN2Q8NDA2 5059 aa2.86□□□□□ -1.95
RIF1-205ENST00000444746 PKHD1P08F94 4074 aa2.86□□□□□ -1.95
RIF1-205ENST00000444746 HECTD4Q9Y4D8 3996 aa2.86□□□□□ -1.95
RIF1-205ENST00000444746 KRTAP19-8Q3LI54 63 aa2.84□□□□□ -1.96
RIF1-205ENST00000444746 PKHD1L1Q86WI1 4243 aa2.82□□□□□ -1.96
RIF1-205ENST00000444746 KRTAP9-3Q9BYQ3 159 aa2.82□□□□□ -1.96
RIF1-205ENST00000444746 TNXBP22105 4242 aa2.78□□□□□ -1.96
RIF1-205ENST00000444746 SPRR2DP22532 72 aa2.77□□□□□ -1.97
RIF1-205ENST00000444746 LCE2BO14633 110 aa2.77□□□□□ -1.97
RIF1-205ENST00000444746 FSIP2Q5CZC0 6907 aa2.73□□□□□ -1.97
RIF1-205ENST00000444746 KRTAP19-2Q3LHN2 52 aa2.73□□□□□ -1.97
RIF1-205ENST00000444746 LOC100996750A0A140TA64 210 aa2.72□□□□□ -1.97
RIF1-205ENST00000444746 KRTAP4-3Q9BYR4 195 aa2.72□□□□□ -1.97
RIF1-205ENST00000444746 KRTAP12-4P60329 112 aa2.71□□□□□ -1.98
RIF1-205ENST00000444746 FAT4Q6V0I7 4981 aa2.69□□□□□ -1.98
RIF1-205ENST00000444746 MUC17Q685J3 4493 aa2.67□□□□□ -1.98
RIF1-205ENST00000444746 MT1LQ93083 61 aa2.61□□□□□ -1.99
RIF1-205ENST00000444746 MT4P47944 62 aa2.6□□□□□ -1.99
RIF1-205ENST00000444746 MT1EP04732 61 aa2.59□□□□□ -1.99
RIF1-205ENST00000444746 KRTAP19-3Q7Z4W3 81 aa2.59□□□□□ -2
RIF1-205ENST00000444746 LCE3DQ9BYE3 92 aa2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms