RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 Q5VSD8 79 aa0.98□□□□□ -2.25
USP40-204ENST00000427947 SSBP3-AS1Q7Z2R9 100 aa0.98□□□□□ -2.25
USP40-204ENST00000427947 H3BUX3 64 aa0.97□□□□□ -2.25
USP40-204ENST00000427947 ETDBQ3ZM63 59 aa0.97□□□□□ -2.25
USP40-204ENST00000427947 PYY3Q5JQD4 70 aa0.97□□□□□ -2.25
USP40-204ENST00000427947 ALKAL2Q6UX46 152 aa0.97□□□□□ -2.25
USP40-204ENST00000427947 TMEM263Q8WUH6 116 aaKnown RBP0.97□□□□□ -2.25
USP40-204ENST00000427947 FAM103A1Q9BTL3 118 aaKnown RBP0.97□□□□□ -2.25
USP40-204ENST00000427947 PSENENQ9NZ42 101 aa0.97□□□□□ -2.25
USP40-204ENST00000427947 H3BSH0 61 aa0.96□□□□□ -2.26
USP40-204ENST00000427947 I3L2K1 104 aa0.96□□□□□ -2.26
USP40-204ENST00000427947 K7EIM0 57 aa0.96□□□□□ -2.26
USP40-204ENST00000427947 WT1-ASQ06250 92 aa0.96□□□□□ -2.26
USP40-204ENST00000427947 PEA15Q15121 130 aa0.96□□□□□ -2.26
USP40-204ENST00000427947 RPL39P5Q59GN2 51 aa0.96□□□□□ -2.26
USP40-204ENST00000427947 C10orf113Q5VZT2 155 aa0.96□□□□□ -2.26
USP40-204ENST00000427947 USMG5Q96IX5 58 aa0.96□□□□□ -2.26
USP40-204ENST00000427947 C10orf95Q9H7T3 257 aa0.96□□□□□ -2.26
USP40-204ENST00000427947 TMEM167BQ9NRX6 74 aa0.96□□□□□ -2.26
USP40-204ENST00000427947 HIGD1BQ9P298 99 aa0.96□□□□□ -2.26
USP40-204ENST00000427947 HILPDAQ9Y5L2 63 aa0.96□□□□□ -2.26
USP40-204ENST00000427947 A8MTW9 85 aa0.95□□□□□ -2.26
USP40-204ENST00000427947 F8WEM9 126 aa0.95□□□□□ -2.26
USP40-204ENST00000427947 NDUFA4O00483 81 aa0.95□□□□□ -2.26
USP40-204ENST00000427947 LEPROTL1O95214 131 aa0.95□□□□□ -2.26
USP40-204ENST00000427947 ARMS2P0C7Q2 107 aa0.95□□□□□ -2.26
USP40-204ENST00000427947 IGLC2P0DOY2 106 aa0.95□□□□□ -2.26
USP40-204ENST00000427947 SPINK7P58062 85 aa0.95□□□□□ -2.26
USP40-204ENST00000427947 COX6A2Q02221 97 aa0.95□□□□□ -2.26
USP40-204ENST00000427947 DEFB136Q30KP8 78 aa0.95□□□□□ -2.26
USP40-204ENST00000427947 LEAP2Q969E1 77 aa0.95□□□□□ -2.26
USP40-204ENST00000427947 SPRR4Q96PI1 79 aa0.95□□□□□ -2.26
USP40-204ENST00000427947 CNFNQ9BYD5 112 aa0.95□□□□□ -2.26
USP40-204ENST00000427947 SMCO4Q9NRQ5 59 aa0.95□□□□□ -2.26
USP40-204ENST00000427947 SMIM27A0A1W2PRY6 76 aa0.94□□□□□ -2.26
USP40-204ENST00000427947 LINC01546A6NGU7 62 aa0.94□□□□□ -2.26
USP40-204ENST00000427947 LINC01549A6NIU2 74 aa0.94□□□□□ -2.26
USP40-204ENST00000427947 CEBPZOSA8MTT3 80 aa0.94□□□□□ -2.26
USP40-204ENST00000427947 K7EMI3 77 aa0.94□□□□□ -2.26
USP40-204ENST00000427947 SFTA3P0C7M3 94 aa0.94□□□□□ -2.26
USP40-204ENST00000427947 IAPPP10997 89 aa0.94□□□□□ -2.26
USP40-204ENST00000427947 TDRG1Q3Y452 100 aa0.94□□□□□ -2.26
USP40-204ENST00000427947 LINC01600Q96MT4 127 aa0.94□□□□□ -2.26
USP40-204ENST00000427947 D6R8Y8 96 aa0.93□□□□□ -2.26
USP40-204ENST00000427947 BCE1O60756 84 aa0.93□□□□□ -2.26
USP40-204ENST00000427947 PRH1P02810 166 aa0.93□□□□□ -2.26
USP40-204ENST00000427947 PLGLAQ15195 96 aa0.93□□□□□ -2.26
USP40-204ENST00000427947 MUSTN1Q8IVN3 82 aa0.93□□□□□ -2.26
USP40-204ENST00000427947 GNG13Q9P2W3 67 aa0.93□□□□□ -2.26
USP40-204ENST00000427947 SMR3BP02814 79 aaPredicted RBP0.92□□□□□ -2.26
USP40-204ENST00000427947 DEFA5Q01523 94 aa0.92□□□□□ -2.26
USP40-204ENST00000427947 RABAC1Q9UI14 185 aa0.92□□□□□ -2.26
USP40-204ENST00000427947 A0A1B0GUT8 65 aa0.91□□□□□ -2.26
USP40-204ENST00000427947 APELAP0DMC3 54 aa0.91□□□□□ -2.26
USP40-204ENST00000427947 CRIP1P50238 77 aa0.91□□□□□ -2.26
USP40-204ENST00000427947 DEFB114Q30KQ6 69 aa0.91□□□□□ -2.26
USP40-204ENST00000427947 LINC00846Q9NV44 126 aa0.91□□□□□ -2.26
USP40-204ENST00000427947 SPCS1Q9Y6A9 102 aa0.91□□□□□ -2.26
USP40-204ENST00000427947 TRAV21A0A0B4J279 112 aa0.9□□□□□ -2.27
USP40-204ENST00000427947 DEFB4AO15263 64 aa0.9□□□□□ -2.27
USP40-204ENST00000427947 ADIRFQ15847 76 aa0.9□□□□□ -2.27
USP40-204ENST00000427947 C18orf32Q8TCD1 76 aa0.9□□□□□ -2.27
USP40-204ENST00000427947 APLNQ9ULZ1 77 aa0.9□□□□□ -2.27
USP40-204ENST00000427947 H0Y9P7 68 aa0.89□□□□□ -2.27
USP40-204ENST00000427947 H3BNG1 76 aa0.89□□□□□ -2.27
USP40-204ENST00000427947 POLR2KP53803 58 aaKnown RBP0.89□□□□□ -2.27
USP40-204ENST00000427947 SPATA8Q6RVD6 105 aa0.89□□□□□ -2.27
USP40-204ENST00000427947 RHPN1-AS1Q9BWJ2 59 aa0.89□□□□□ -2.27
USP40-204ENST00000427947 ST20Q9HBF5 79 aa0.89□□□□□ -2.27
USP40-204ENST00000427947 PRO0255Q9UI72 69 aa0.89□□□□□ -2.27
USP40-204ENST00000427947 A0A1B0GU69 56 aa0.88□□□□□ -2.27
USP40-204ENST00000427947 IGIPA6NJ69 53 aa0.88□□□□□ -2.27
USP40-204ENST00000427947 M0QY20 66 aa0.88□□□□□ -2.27
USP40-204ENST00000427947 FCER1GP30273 86 aa0.88□□□□□ -2.27
USP40-204ENST00000427947 DEFB135Q30KP9 77 aa0.88□□□□□ -2.27
USP40-204ENST00000427947 SMIM2Q9BVW6 85 aa0.88□□□□□ -2.27
USP40-204ENST00000427947 SPINK4O60575 86 aa0.87□□□□□ -2.27
USP40-204ENST00000427947 C3orf79P0CE67 100 aa0.87□□□□□ -2.27
USP40-204ENST00000427947 IGLC3P0DOY3 106 aa0.87□□□□□ -2.27
USP40-204ENST00000427947 PLNP26678 52 aa0.87□□□□□ -2.27
USP40-204ENST00000427947 DEFB1P60022 68 aa0.87□□□□□ -2.27
USP40-204ENST00000427947 TP53AIP1Q9HCN2 124 aa0.87□□□□□ -2.27
USP40-204ENST00000427947 TIMM8BQ9Y5J9 83 aaPredicted RBP0.87□□□□□ -2.27
USP40-204ENST00000427947 H3BVH4 76 aa0.86□□□□□ -2.27
USP40-204ENST00000427947 I3L3M4 83 aa0.86□□□□□ -2.27
USP40-204ENST00000427947 COX8AP10176 69 aa0.86□□□□□ -2.27
USP40-204ENST00000427947 IFI27P40305 119 aaPredicted RBP0.86□□□□□ -2.27
USP40-204ENST00000427947 DEFB131AP59861 70 aa0.86□□□□□ -2.27
USP40-204ENST00000427947 KRTAP21-1Q3LI58 79 aa0.86□□□□□ -2.27
USP40-204ENST00000427947 UBE2D4Q9Y2X8 147 aa0.86□□□□□ -2.27
USP40-204ENST00000427947 DEFB131BA0A096LNP1 70 aa0.85□□□□□ -2.27
USP40-204ENST00000427947 TRBV7-4A0A0J9YYF1 115 aa0.85□□□□□ -2.27
USP40-204ENST00000427947 FLGP20930 4061 aaPredicted RBP0.84□□□□□ -2.27
USP40-204ENST00000427947 MYMXA0A1B0GTQ4 84 aa0.84□□□□□ -2.27
USP40-204ENST00000427947 LINC00959A0A1B0GUT2 108 aa0.84□□□□□ -2.27
USP40-204ENST00000427947 NDUFA1O15239 70 aa0.84□□□□□ -2.27
USP40-204ENST00000427947 SPART-AS1P0CW21 52 aa0.84□□□□□ -2.27
USP40-204ENST00000427947 HTN3P15516 51 aa0.84□□□□□ -2.27
USP40-204ENST00000427947 WFDC2Q14508 124 aa0.84□□□□□ -2.27
USP40-204ENST00000427947 LINC01556Q5JQF7 62 aa0.84□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms