RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 FAM236CP0DP71 79 aa0.81□□□□□ -2.28
PTPRC-208ENST00000427110 UBE2BP63146 152 aa0.81□□□□□ -2.28
PTPRC-208ENST00000427110 C20orf197Q8N268 126 aa0.81□□□□□ -2.28
PTPRC-208ENST00000427110 DEFB105AQ8NG35 78 aa0.81□□□□□ -2.28
PTPRC-208ENST00000427110 TMEM254Q8TBM7 123 aa0.81□□□□□ -2.28
PTPRC-208ENST00000427110 LINC00472Q9H8W2 130 aa0.81□□□□□ -2.28
PTPRC-208ENST00000427110 LINC00474Q9P2X8 69 aa0.81□□□□□ -2.28
PTPRC-208ENST00000427110 MGAM2Q2M2H8 2515 aa0.81□□□□□ -2.28
PTPRC-208ENST00000427110 PKD1P98161 4303 aa0.81□□□□□ -2.28
PTPRC-208ENST00000427110 FAT2Q9NYQ8 4349 aa0.81□□□□□ -2.28
PTPRC-208ENST00000427110 A0A087WTM6 91 aa0.8□□□□□ -2.28
PTPRC-208ENST00000427110 HCG22E2RYF7 251 aa0.8□□□□□ -2.28
PTPRC-208ENST00000427110 F8WEM9 126 aa0.8□□□□□ -2.28
PTPRC-208ENST00000427110 K7EQZ3 153 aa0.8□□□□□ -2.28
PTPRC-208ENST00000427110 PRLHP81277 87 aa0.8□□□□□ -2.28
PTPRC-208ENST00000427110 PMAIP1Q13794 54 aa0.8□□□□□ -2.28
PTPRC-208ENST00000427110 ASB16-AS1Q495Z4 193 aa0.8□□□□□ -2.28
PTPRC-208ENST00000427110 Q5XG85 94 aa0.8□□□□□ -2.28
PTPRC-208ENST00000427110 PHF5AQ7RTV0 110 aaKnown RBP0.8□□□□□ -2.28
PTPRC-208ENST00000427110 PRR15Q8IV56 129 aa0.8□□□□□ -2.28
PTPRC-208ENST00000427110 UBE2DNLQ8IWF7 75 aa0.8□□□□□ -2.28
PTPRC-208ENST00000427110 CYP4F30PQ9H0H9 118 aa0.8□□□□□ -2.28
PTPRC-208ENST00000427110 PLAC8Q9NZF1 115 aa0.8□□□□□ -2.28
PTPRC-208ENST00000427110 SRRM2Q9UQ35 2752 aaKnown RBP0.8□□□□□ -2.28
PTPRC-208ENST00000427110 PKHD1L1Q86WI1 4243 aa0.79□□□□□ -2.28
PTPRC-208ENST00000427110 DNHD1Q96M86 4753 aa0.79□□□□□ -2.28
PTPRC-208ENST00000427110 A0A087WSZ3 146 aa0.79□□□□□ -2.28
PTPRC-208ENST00000427110 hDV103S1A0JD37 113 aa0.79□□□□□ -2.28
PTPRC-208ENST00000427110 NDUFB1O75438 58 aa0.79□□□□□ -2.28
PTPRC-208ENST00000427110 Q96NJ1 140 aa0.79□□□□□ -2.28
PTPRC-208ENST00000427110 SNURFQ9Y675 71 aa0.79□□□□□ -2.28
PTPRC-208ENST00000427110 VPS13BQ7Z7G8 4022 aa0.79□□□□□ -2.28
PTPRC-208ENST00000427110 LRP1BQ9NZR2 4599 aa0.79□□□□□ -2.28
PTPRC-208ENST00000427110 TGP01266 2768 aa0.79□□□□□ -2.28
PTPRC-208ENST00000427110 DYNC1H1Q14204 4646 aaKnown RBP0.78□□□□□ -2.28
PTPRC-208ENST00000427110 APOBP04114 4563 aaKnown RBP0.78□□□□□ -2.28
PTPRC-208ENST00000427110 TRAV22A0A0B4J277 110 aa0.78□□□□□ -2.28
PTPRC-208ENST00000427110 MMP24-AS1A0A0U1RRL7 71 aa0.78□□□□□ -2.28
PTPRC-208ENST00000427110 Q1T7F1 81 aa0.78□□□□□ -2.28
PTPRC-208ENST00000427110 C1orf134Q5TEV5 83 aa0.78□□□□□ -2.28
PTPRC-208ENST00000427110 CASC2Q6XLA1 102 aa0.78□□□□□ -2.28
PTPRC-208ENST00000427110 SSBP3-AS1Q7Z2R9 100 aa0.78□□□□□ -2.28
PTPRC-208ENST00000427110 WFDC13Q8IUB5 93 aa0.78□□□□□ -2.28
PTPRC-208ENST00000427110 TP53AIP1Q9HCN2 124 aa0.78□□□□□ -2.28
PTPRC-208ENST00000427110 MEGF8Q7Z7M0 2845 aa0.78□□□□□ -2.29
PTPRC-208ENST00000427110 HYDINQ4G0P3 5121 aa0.78□□□□□ -2.29
PTPRC-208ENST00000427110 H0Y9P7 68 aa0.77□□□□□ -2.29
PTPRC-208ENST00000427110 HRCT1Q6UXD1 115 aa0.77□□□□□ -2.29
PTPRC-208ENST00000427110 LINC00208Q96KT6 92 aa0.77□□□□□ -2.29
PTPRC-208ENST00000427110 MRPL34Q9BQ48 92 aaKnown RBP0.77□□□□□ -2.29
PTPRC-208ENST00000427110 PKHD1P08F94 4074 aa0.77□□□□□ -2.29
PTPRC-208ENST00000427110 TNXBP22105 4242 aa0.76□□□□□ -2.29
PTPRC-208ENST00000427110 LOC101927531A0A1B0GV80 90 aa0.76□□□□□ -2.29
PTPRC-208ENST00000427110 RPS29P62273 56 aaKnown RBP0.76□□□□□ -2.29
PTPRC-208ENST00000427110 LIMD2Q9BT23 127 aa0.76□□□□□ -2.29
PTPRC-208ENST00000427110 HSPG2P98160 4391 aa0.75□□□□□ -2.29
PTPRC-208ENST00000427110 FAT1Q14517 4588 aa0.75□□□□□ -2.29
PTPRC-208ENST00000427110 FAT3Q8TDW7 4589 aa0.75□□□□□ -2.29
PTPRC-208ENST00000427110 LY6G6CO95867 125 aa0.75□□□□□ -2.29
PTPRC-208ENST00000427110 LINC01558Q9Y6Z2 57 aa0.75□□□□□ -2.29
PTPRC-208ENST00000427110 RYR2Q92736 4967 aa0.74□□□□□ -2.29
PTPRC-208ENST00000427110 SPINK1P00995 79 aa0.74□□□□□ -2.29
PTPRC-208ENST00000427110 ACYP2P14621 99 aa0.74□□□□□ -2.29
PTPRC-208ENST00000427110 Q5VV11 94 aa0.74□□□□□ -2.29
PTPRC-208ENST00000427110 SPAG11AQ6PDA7 123 aa0.74□□□□□ -2.29
PTPRC-208ENST00000427110 SPINK6Q6UWN8 80 aa0.74□□□□□ -2.29
PTPRC-208ENST00000427110 BRK1Q8WUW1 75 aa0.74□□□□□ -2.29
PTPRC-208ENST00000427110 DMAC1Q96GE9 116 aa0.74□□□□□ -2.29
PTPRC-208ENST00000427110 RETNLBQ9BQ08 111 aa0.74□□□□□ -2.29
PTPRC-208ENST00000427110 KRTAP10-4P60372 401 aaPredicted RBP0.73□□□□□ -2.29
PTPRC-208ENST00000427110 ATP11AUNQ6ZP68 121 aa0.73□□□□□ -2.29
PTPRC-208ENST00000427110 LRP1Q07954 4544 aaKnown RBP0.73□□□□□ -2.29
PTPRC-208ENST00000427110 FLG2Q5D862 2391 aaPredicted RBP0.72□□□□□ -2.29
PTPRC-208ENST00000427110 CHKB-CPT1BH3BT56 60 aa0.72□□□□□ -2.29
PTPRC-208ENST00000427110 LCA10Q71F78 164 aa0.72□□□□□ -2.29
PTPRC-208ENST00000427110 PRR15LQ9BU68 103 aa0.72□□□□□ -2.29
PTPRC-208ENST00000427110 CDC42SE1Q9NRR8 79 aa0.72□□□□□ -2.29
PTPRC-208ENST00000427110 KMT2CQ8NEZ4 4911 aaKnown RBP0.72□□□□□ -2.29
PTPRC-208ENST00000427110 RYR1P21817 5038 aa0.71□□□□□ -2.3
PTPRC-208ENST00000427110 A6NN06 94 aa0.71□□□□□ -2.3
PTPRC-208ENST00000427110 SPINK7P58062 85 aa0.71□□□□□ -2.3
PTPRC-208ENST00000427110 SPATA8Q6RVD6 105 aa0.71□□□□□ -2.3
PTPRC-208ENST00000427110 MYCBP2O75592 4640 aa0.71□□□□□ -2.3
PTPRC-208ENST00000427110 RYR3Q15413 4870 aa0.7□□□□□ -2.3
PTPRC-208ENST00000427110 A0A1B0GU69 56 aa0.7□□□□□ -2.3
PTPRC-208ENST00000427110 UQCR11O14957 56 aa0.7□□□□□ -2.3
PTPRC-208ENST00000427110 SPTSSBQ8NFR3 76 aa0.7□□□□□ -2.3
PTPRC-208ENST00000427110 SMR3BP02814 79 aaPredicted RBP0.69□□□□□ -2.3
PTPRC-208ENST00000427110 MIR22HGQ0VDD5 57 aa0.69□□□□□ -2.3
PTPRC-208ENST00000427110 COX6B2Q6YFQ2 88 aa0.69□□□□□ -2.3
PTPRC-208ENST00000427110 MUC17Q685J3 4493 aa0.68□□□□□ -2.3
PTPRC-208ENST00000427110 DMBT1Q9UGM3 2413 aaPredicted RBP0.68□□□□□ -2.3
PTPRC-208ENST00000427110 C9orf92A6NGG3 77 aa0.68□□□□□ -2.3
PTPRC-208ENST00000427110 RPL37P61927 97 aaKnown RBP0.68□□□□□ -2.3
PTPRC-208ENST00000427110 LRP2P98164 4655 aa0.68□□□□□ -2.3
PTPRC-208ENST00000427110 H0YAA0 97 aa0.67□□□□□ -2.3
PTPRC-208ENST00000427110 MT1HL1P0DM35 61 aa0.67□□□□□ -2.3
PTPRC-208ENST00000427110 H1FX-AS1Q4G0G2 97 aa0.67□□□□□ -2.3
PTPRC-208ENST00000427110 Q5VSD8 79 aa0.67□□□□□ -2.3
PTPRC-208ENST00000427110 LPAP08519 4548 aa0.66□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms