RNA–Protein interactions for RNA: ENST00000418258.5

PTCH1-205, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,815 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-205ENST00000418258 LCE3AQ5TA76 89 aa4.82□□□□□ -1.64
PTCH1-205ENST00000418258 KRTAP8-1Q8IUC2 63 aa4.81□□□□□ -1.64
PTCH1-205ENST00000418258 LORP23490 312 aaPredicted RBP4.78□□□□□ -1.64
PTCH1-205ENST00000418258 KRTAP10-4P60372 401 aaPredicted RBP4.78□□□□□ -1.64
PTCH1-205ENST00000418258 DNAH1Q9P2D7 4330 aa4.77□□□□□ -1.65
PTCH1-205ENST00000418258 KRTAP10-5P60370 271 aa4.74□□□□□ -1.65
PTCH1-205ENST00000418258 KRTAP23-1A1A580 65 aa4.69□□□□□ -1.66
PTCH1-205ENST00000418258 DNAH2Q9P225 4427 aa4.68□□□□□ -1.66
PTCH1-205ENST00000418258 DNAH3Q8TD57 4116 aa4.66□□□□□ -1.66
PTCH1-205ENST00000418258 LYSTQ99698 3801 aa4.64□□□□□ -1.67
PTCH1-205ENST00000418258 KMT2AQ03164 3969 aa4.64□□□□□ -1.67
PTCH1-205ENST00000418258 DNAH9Q9NYC9 4486 aa4.63□□□□□ -1.67
PTCH1-205ENST00000418258 FRAS1Q86XX4 4008 aa4.62□□□□□ -1.67
PTCH1-205ENST00000418258 ANK2Q01484 3957 aa4.59□□□□□ -1.67
PTCH1-205ENST00000418258 VPS13BQ7Z7G8 4022 aa4.59□□□□□ -1.67
PTCH1-205ENST00000418258 DNAH7Q8WXX0 4024 aa4.58□□□□□ -1.68
PTCH1-205ENST00000418258 MT1HP80294 61 aa4.51□□□□□ -1.69
PTCH1-205ENST00000418258 SPRR2FQ96RM1 72 aa4.48□□□□□ -1.69
PTCH1-205ENST00000418258 KRTAP10-7P60409 375 aaPredicted RBP4.48□□□□□ -1.69
PTCH1-205ENST00000418258 CMYA5Q8N3K9 4069 aa4.47□□□□□ -1.69
PTCH1-205ENST00000418258 FAT2Q9NYQ8 4349 aa4.47□□□□□ -1.69
PTCH1-205ENST00000418258 DNAH10Q8IVF4 4471 aa4.45□□□□□ -1.7
PTCH1-205ENST00000418258 KRTAP4-1Q9BYQ7 146 aa4.44□□□□□ -1.7
PTCH1-205ENST00000418258 PRKDCP78527 4128 aaKnown RBP4.4□□□□□ -1.71
PTCH1-205ENST00000418258 MT2AP02795 61 aa4.37□□□□□ -1.71
PTCH1-205ENST00000418258 HECTD4Q9Y4D8 3996 aa4.36□□□□□ -1.71
PTCH1-205ENST00000418258 SPRR2GQ9BYE4 73 aa4.35□□□□□ -1.71
PTCH1-205ENST00000418258 KRTAP19-5Q3LI72 72 aa4.33□□□□□ -1.72
PTCH1-205ENST00000418258 DYNC2H1Q8NCM8 4307 aaKnown RBP4.32□□□□□ -1.72
PTCH1-205ENST00000418258 DNAH6Q9C0G6 4158 aa4.31□□□□□ -1.72
PTCH1-205ENST00000418258 PLECQ15149 4684 aaKnown RBP4.3□□□□□ -1.72
PTCH1-205ENST00000418258 DNAH5Q8TE73 4624 aa4.3□□□□□ -1.72
PTCH1-205ENST00000418258 MT1FP04733 61 aa4.29□□□□□ -1.72
PTCH1-205ENST00000418258 DNAH11Q96DT5 4516 aa4.28□□□□□ -1.72
PTCH1-205ENST00000418258 DNAH8Q96JB1 4490 aa4.28□□□□□ -1.72
PTCH1-205ENST00000418258 VPS13DQ5THJ4 4388 aa4.28□□□□□ -1.72
PTCH1-205ENST00000418258 STARD9Q9P2P6 4700 aa4.26□□□□□ -1.73
PTCH1-205ENST00000418258 SPRR2EP22531 72 aa4.25□□□□□ -1.73
PTCH1-205ENST00000418258 SPRR2BP35325 72 aa4.25□□□□□ -1.73
PTCH1-205ENST00000418258 SPRR2AP35326 72 aa4.25□□□□□ -1.73
PTCH1-205ENST00000418258 LCE3CQ5T5A8 94 aa4.25□□□□□ -1.73
PTCH1-205ENST00000418258 DNAH17Q9UFH2 4485 aa4.25□□□□□ -1.73
PTCH1-205ENST00000418258 LRP1BQ9NZR2 4599 aa4.19□□□□□ -1.74
PTCH1-205ENST00000418258 SPRR2DP22532 72 aa4.12□□□□□ -1.75
PTCH1-205ENST00000418258 LCE3BQ5TA77 95 aa4.1□□□□□ -1.75
PTCH1-205ENST00000418258 LCE2BO14633 110 aa4.08□□□□□ -1.76
PTCH1-205ENST00000418258 FAT1Q14517 4588 aa4.06□□□□□ -1.76
PTCH1-205ENST00000418258 KRTAP19-4Q3LI73 84 aa4.04□□□□□ -1.76
PTCH1-205ENST00000418258 KRTAP12-4P60329 112 aa4.02□□□□□ -1.77
PTCH1-205ENST00000418258 PKHD1P08F94 4074 aa3.98□□□□□ -1.77
PTCH1-205ENST00000418258 MT1GP13640 62 aa3.98□□□□□ -1.77
PTCH1-205ENST00000418258 SACSQ9NZJ4 4579 aa3.96□□□□□ -1.78
PTCH1-205ENST00000418258 FLGP20930 4061 aaPredicted RBP3.95□□□□□ -1.78
PTCH1-205ENST00000418258 PKHD1L1Q86WI1 4243 aa3.94□□□□□ -1.78
PTCH1-205ENST00000418258 KRTAP19-8Q3LI54 63 aa3.94□□□□□ -1.78
PTCH1-205ENST00000418258 APOBP04114 4563 aaKnown RBP3.93□□□□□ -1.78
PTCH1-205ENST00000418258 KRTAP19-1Q8IUB9 90 aa3.92□□□□□ -1.78
PTCH1-205ENST00000418258 MT1XP80297 61 aa3.91□□□□□ -1.78
PTCH1-205ENST00000418258 DYNC1H1Q14204 4646 aaKnown RBP3.9□□□□□ -1.78
PTCH1-205ENST00000418258 FAT3Q8TDW7 4589 aa3.89□□□□□ -1.79
PTCH1-205ENST00000418258 PKD1P98161 4303 aa3.88□□□□□ -1.79
PTCH1-205ENST00000418258 KRTAP4-8A0A0G2JLE6 195 aa3.85□□□□□ -1.79
PTCH1-205ENST00000418258 KRTAP4-8Q9BYQ9 185 aa3.85□□□□□ -1.79
PTCH1-205ENST00000418258 DNHD1Q96M86 4753 aa3.85□□□□□ -1.79
PTCH1-205ENST00000418258 HSPG2P98160 4391 aa3.84□□□□□ -1.8
PTCH1-205ENST00000418258 LCE2CQ5TA81 110 aa3.83□□□□□ -1.8
PTCH1-205ENST00000418258 KRTAP9-8Q9BYQ0 159 aa3.83□□□□□ -1.8
PTCH1-205ENST00000418258 LRP1Q07954 4544 aaKnown RBP3.82□□□□□ -1.8
PTCH1-205ENST00000418258 MYCBP2O75592 4640 aa3.8□□□□□ -1.8
PTCH1-205ENST00000418258 MT1BP07438 61 aa3.79□□□□□ -1.8
PTCH1-205ENST00000418258 KRTAP17-1Q9BYP8 105 aa3.79□□□□□ -1.8
PTCH1-205ENST00000418258 RYR1P21817 5038 aa3.78□□□□□ -1.8
PTCH1-205ENST00000418258 LCE3DQ9BYE3 92 aa3.78□□□□□ -1.8
PTCH1-205ENST00000418258 LCE2DQ5TA82 110 aaPredicted RBP3.77□□□□□ -1.81
PTCH1-205ENST00000418258 LPAP08519 4548 aa3.76□□□□□ -1.81
PTCH1-205ENST00000418258 TNXBP22105 4242 aa3.74□□□□□ -1.81
PTCH1-205ENST00000418258 KRTAP9-3Q9BYQ3 159 aa3.73□□□□□ -1.81
PTCH1-205ENST00000418258 MT4P47944 62 aa3.69□□□□□ -1.82
PTCH1-205ENST00000418258 KRTAP19-3Q7Z4W3 81 aa3.68□□□□□ -1.82
PTCH1-205ENST00000418258 LCE3EQ5T5B0 92 aa3.67□□□□□ -1.82
PTCH1-205ENST00000418258 KIAA1109Q2LD37 5005 aa3.63□□□□□ -1.83
PTCH1-205ENST00000418258 HYDINQ4G0P3 5121 aa3.59□□□□□ -1.83
PTCH1-205ENST00000418258 KRTAP9-2Q9BYQ4 174 aa3.58□□□□□ -1.84
PTCH1-205ENST00000418258 RYR3Q15413 4870 aa3.58□□□□□ -1.84
PTCH1-205ENST00000418258 MT1LQ93083 61 aa3.58□□□□□ -1.84
PTCH1-205ENST00000418258 KRTAP4-7Q9BYR0 210 aa3.58□□□□□ -1.84
PTCH1-205ENST00000418258 MT1EP04732 61 aa3.54□□□□□ -1.84
PTCH1-205ENST00000418258 SPRR5A0A1B0GTR4 108 aa3.53□□□□□ -1.84
PTCH1-205ENST00000418258 LCE1BQ5T7P3 118 aa3.52□□□□□ -1.85
PTCH1-205ENST00000418258 LRP2P98164 4655 aa3.51□□□□□ -1.85
PTCH1-205ENST00000418258 RYR2Q92736 4967 aa3.51□□□□□ -1.85
PTCH1-205ENST00000418258 MT3P25713 68 aa3.51□□□□□ -1.85
PTCH1-205ENST00000418258 LCE1DQ5T752 114 aa3.5□□□□□ -1.85
PTCH1-205ENST00000418258 MT1MQ8N339 61 aa3.46□□□□□ -1.86
PTCH1-205ENST00000418258 BIRC6Q9NR09 4857 aa3.45□□□□□ -1.86
PTCH1-205ENST00000418258 LOC100996750A0A140TA64 210 aa3.45□□□□□ -1.86
PTCH1-205ENST00000418258 KMT2CQ8NEZ4 4911 aaKnown RBP3.43□□□□□ -1.86
PTCH1-205ENST00000418258 PRM1P04553 51 aa3.42□□□□□ -1.86
PTCH1-205ENST00000418258 ABCA13Q86UQ4 5058 aa3.42□□□□□ -1.86
PTCH1-205ENST00000418258 KRTAP19-6Q3LI70 58 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 101.6 ms