RNA–Protein interactions for RNA: ENST00000409402.8

SPIRE1-202, Transcript of spire type actin nucleation factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPIRE1, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIRE1-202ENST00000409402 DNAH9Q9NYC9 4486 aa10.53□□□□□ -0.72
SPIRE1-202ENST00000409402 KRTAP8-1Q8IUC2 63 aa10.53□□□□□ -0.72
SPIRE1-202ENST00000409402 DNAH5Q8TE73 4624 aa10.45□□□□□ -0.74
SPIRE1-202ENST00000409402 MT1HP80294 61 aa10.34□□□□□ -0.75
SPIRE1-202ENST00000409402 DNAH1Q9P2D7 4330 aa10.33□□□□□ -0.76
SPIRE1-202ENST00000409402 KRTAP4-1Q9BYQ7 146 aa10.32□□□□□ -0.76
SPIRE1-202ENST00000409402 DNAH11Q96DT5 4516 aa10.25□□□□□ -0.77
SPIRE1-202ENST00000409402 VPS13CQ709C8 3753 aa10.23□□□□□ -0.77
SPIRE1-202ENST00000409402 PLECQ15149 4684 aaKnown RBP10.21□□□□□ -0.77
SPIRE1-202ENST00000409402 DNAH10Q8IVF4 4471 aa10.21□□□□□ -0.78
SPIRE1-202ENST00000409402 MT2AP02795 61 aa10.14□□□□□ -0.79
SPIRE1-202ENST00000409402 DNAH2Q9P225 4427 aa10.11□□□□□ -0.79
SPIRE1-202ENST00000409402 AKAP9Q99996 3911 aa10.06□□□□□ -0.8
SPIRE1-202ENST00000409402 KRTAP10-5P60370 271 aa10.04□□□□□ -0.8
SPIRE1-202ENST00000409402 SPRR2GQ9BYE4 73 aa10□□□□□ -0.81
SPIRE1-202ENST00000409402 VPS13DQ5THJ4 4388 aa9.95□□□□□ -0.82
SPIRE1-202ENST00000409402 DNHD1Q96M86 4753 aa9.94□□□□□ -0.82
SPIRE1-202ENST00000409402 DNAH17Q9UFH2 4485 aa9.93□□□□□ -0.82
SPIRE1-202ENST00000409402 CSMD3Q7Z407 3707 aa9.92□□□□□ -0.82
SPIRE1-202ENST00000409402 DYNC1H1Q14204 4646 aaKnown RBP9.89□□□□□ -0.83
SPIRE1-202ENST00000409402 MT1FP04733 61 aa9.89□□□□□ -0.83
SPIRE1-202ENST00000409402 SPRR2FQ96RM1 72 aa9.8□□□□□ -0.84
SPIRE1-202ENST00000409402 LRP1BQ9NZR2 4599 aa9.8□□□□□ -0.84
SPIRE1-202ENST00000409402 ZNF469Q96JG9 3925 aaPredicted RBP9.8□□□□□ -0.84
SPIRE1-202ENST00000409402 FAT2Q9NYQ8 4349 aa9.75□□□□□ -0.85
SPIRE1-202ENST00000409402 KRTAP10-7P60409 375 aaPredicted RBP9.7□□□□□ -0.86
SPIRE1-202ENST00000409402 RYR1P21817 5038 aa9.68□□□□□ -0.86
SPIRE1-202ENST00000409402 FAT1Q14517 4588 aa9.67□□□□□ -0.86
SPIRE1-202ENST00000409402 DYNC2H1Q8NCM8 4307 aaKnown RBP9.66□□□□□ -0.86
SPIRE1-202ENST00000409402 SACSQ9NZJ4 4579 aa9.65□□□□□ -0.87
SPIRE1-202ENST00000409402 KRTAP19-5Q3LI72 72 aa9.62□□□□□ -0.87
SPIRE1-202ENST00000409402 DNAH3Q8TD57 4116 aa9.59□□□□□ -0.87
SPIRE1-202ENST00000409402 STARD9Q9P2P6 4700 aa9.57□□□□□ -0.88
SPIRE1-202ENST00000409402 LCE3CQ5T5A8 94 aa9.41□□□□□ -0.9
SPIRE1-202ENST00000409402 KRTAP19-4Q3LI73 84 aa9.38□□□□□ -0.91
SPIRE1-202ENST00000409402 DNAH8Q96JB1 4490 aa9.35□□□□□ -0.91
SPIRE1-202ENST00000409402 APOBP04114 4563 aaKnown RBP9.34□□□□□ -0.91
SPIRE1-202ENST00000409402 RYR3Q15413 4870 aa9.33□□□□□ -0.92
SPIRE1-202ENST00000409402 KRTAP19-8Q3LI54 63 aa9.29□□□□□ -0.92
SPIRE1-202ENST00000409402 PRKDCP78527 4128 aaKnown RBP9.29□□□□□ -0.92
SPIRE1-202ENST00000409402 ANK2Q01484 3957 aa9.28□□□□□ -0.92
SPIRE1-202ENST00000409402 SPRR2EP22531 72 aa9.28□□□□□ -0.92
SPIRE1-202ENST00000409402 SPRR2BP35325 72 aa9.28□□□□□ -0.92
SPIRE1-202ENST00000409402 SPRR2AP35326 72 aa9.28□□□□□ -0.92
SPIRE1-202ENST00000409402 KRTAP17-1Q9BYP8 105 aa9.25□□□□□ -0.93
SPIRE1-202ENST00000409402 VPS13BQ7Z7G8 4022 aa9.2□□□□□ -0.94
SPIRE1-202ENST00000409402 KRTAP19-1Q8IUB9 90 aa9.19□□□□□ -0.94
SPIRE1-202ENST00000409402 DNAH6Q9C0G6 4158 aa9.18□□□□□ -0.94
SPIRE1-202ENST00000409402 FAT3Q8TDW7 4589 aa9.14□□□□□ -0.95
SPIRE1-202ENST00000409402 KMT2AQ03164 3969 aa9.1□□□□□ -0.95
SPIRE1-202ENST00000409402 DNAH7Q8WXX0 4024 aa9.06□□□□□ -0.96
SPIRE1-202ENST00000409402 RYR2Q92736 4967 aa9.01□□□□□ -0.97
SPIRE1-202ENST00000409402 MT1XP80297 61 aa9□□□□□ -0.97
SPIRE1-202ENST00000409402 LRP1Q07954 4544 aaKnown RBP9□□□□□ -0.97
SPIRE1-202ENST00000409402 SPRR2DP22532 72 aa9□□□□□ -0.97
SPIRE1-202ENST00000409402 HERC1Q15751 4861 aa8.99□□□□□ -0.97
SPIRE1-202ENST00000409402 KRTAP9-8Q9BYQ0 159 aa8.96□□□□□ -0.98
SPIRE1-202ENST00000409402 MT1BP07438 61 aa8.94□□□□□ -0.98
SPIRE1-202ENST00000409402 KIAA1109Q2LD37 5005 aa8.93□□□□□ -0.98
SPIRE1-202ENST00000409402 LCE2BO14633 110 aa8.91□□□□□ -0.98
SPIRE1-202ENST00000409402 LYSTQ99698 3801 aa8.88□□□□□ -0.99
SPIRE1-202ENST00000409402 KRTAP9-3Q9BYQ3 159 aa8.8□□□□□ -1
SPIRE1-202ENST00000409402 CMYA5Q8N3K9 4069 aa8.77□□□□□ -1.01
SPIRE1-202ENST00000409402 LCE3BQ5TA77 95 aa8.77□□□□□ -1.01
SPIRE1-202ENST00000409402 LCE2CQ5TA81 110 aa8.77□□□□□ -1.01
SPIRE1-202ENST00000409402 MT1GP13640 62 aa8.76□□□□□ -1.01
SPIRE1-202ENST00000409402 BIRC6Q9NR09 4857 aa8.75□□□□□ -1.01
SPIRE1-202ENST00000409402 HSPG2P98160 4391 aa8.75□□□□□ -1.01
SPIRE1-202ENST00000409402 MYCBP2O75592 4640 aa8.74□□□□□ -1.01
SPIRE1-202ENST00000409402 KRTAP12-4P60329 112 aa8.73□□□□□ -1.01
SPIRE1-202ENST00000409402 KRTAP4-8A0A0G2JLE6 195 aa8.67□□□□□ -1.02
SPIRE1-202ENST00000409402 KRTAP4-8Q9BYQ9 185 aa8.67□□□□□ -1.02
SPIRE1-202ENST00000409402 HERC2O95714 4834 aa8.63□□□□□ -1.03
SPIRE1-202ENST00000409402 PKHD1L1Q86WI1 4243 aa8.6□□□□□ -1.03
SPIRE1-202ENST00000409402 PKD1P98161 4303 aa8.6□□□□□ -1.03
SPIRE1-202ENST00000409402 FRAS1Q86XX4 4008 aa8.54□□□□□ -1.04
SPIRE1-202ENST00000409402 HECTD4Q9Y4D8 3996 aa8.51□□□□□ -1.05
SPIRE1-202ENST00000409402 PCLOQ9Y6V0 5065 aa8.48□□□□□ -1.05
SPIRE1-202ENST00000409402 KRTAP19-3Q7Z4W3 81 aa8.38□□□□□ -1.07
SPIRE1-202ENST00000409402 LCE3DQ9BYE3 92 aa8.25□□□□□ -1.09
SPIRE1-202ENST00000409402 KRTAP19-2Q3LHN2 52 aa8.25□□□□□ -1.09
SPIRE1-202ENST00000409402 LRP2P98164 4655 aa8.24□□□□□ -1.09
SPIRE1-202ENST00000409402 HYDINQ4G0P3 5121 aa8.24□□□□□ -1.09
SPIRE1-202ENST00000409402 LCE2DQ5TA82 110 aaPredicted RBP8.2□□□□□ -1.1
SPIRE1-202ENST00000409402 MT1LQ93083 61 aa8.2□□□□□ -1.1
SPIRE1-202ENST00000409402 MT1EP04732 61 aa8.16□□□□□ -1.1
SPIRE1-202ENST00000409402 SPRR5A0A1B0GTR4 108 aa8.15□□□□□ -1.1
SPIRE1-202ENST00000409402 KRTAP9-2Q9BYQ4 174 aa8.15□□□□□ -1.11
SPIRE1-202ENST00000409402 LPAP08519 4548 aa8.11□□□□□ -1.11
SPIRE1-202ENST00000409402 LCE3EQ5T5B0 92 aa8.1□□□□□ -1.11
SPIRE1-202ENST00000409402 KRTAP19-6Q3LI70 58 aa8.09□□□□□ -1.11
SPIRE1-202ENST00000409402 PKHD1P08F94 4074 aa8.08□□□□□ -1.12
SPIRE1-202ENST00000409402 KRTAP4-7Q9BYR0 210 aa8.06□□□□□ -1.12
SPIRE1-202ENST00000409402 EPPK1P58107 5090 aaKnown RBP7.98□□□□□ -1.13
SPIRE1-202ENST00000409402 MT1MQ8N339 61 aa7.94□□□□□ -1.14
SPIRE1-202ENST00000409402 TNXBP22105 4242 aa7.92□□□□□ -1.14
SPIRE1-202ENST00000409402 MT4P47944 62 aa7.91□□□□□ -1.14
SPIRE1-202ENST00000409402 FLGP20930 4061 aaPredicted RBP7.87□□□□□ -1.15
SPIRE1-202ENST00000409402 KMT2CQ8NEZ4 4911 aaKnown RBP7.86□□□□□ -1.15
SPIRE1-202ENST00000409402 MT3P25713 68 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms