RNA–Protein interactions for RNA: ENST00000392455.7

CCDC50-201, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CCDC50, Length 8,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-201ENST00000392455 KRTAP4-5Q9BYR2 181 aa6.26□□□□□ -1.41
CCDC50-201ENST00000392455 KRTAP19-4Q3LI73 84 aa6.23□□□□□ -1.41
CCDC50-201ENST00000392455 LCE3AQ5TA76 89 aa6.21□□□□□ -1.42
CCDC50-201ENST00000392455 KRTAP8-1Q8IUC2 63 aa6.2□□□□□ -1.42
CCDC50-201ENST00000392455 KRTAP10-4P60372 401 aaPredicted RBP6.1□□□□□ -1.43
CCDC50-201ENST00000392455 LORP23490 312 aaPredicted RBP6.02□□□□□ -1.45
CCDC50-201ENST00000392455 ZNF469Q96JG9 3925 aaPredicted RBP5.99□□□□□ -1.45
CCDC50-201ENST00000392455 KRTAP10-7P60409 375 aaPredicted RBP5.98□□□□□ -1.45
CCDC50-201ENST00000392455 DNAH1Q9P2D7 4330 aa5.88□□□□□ -1.47
CCDC50-201ENST00000392455 DNAH3Q8TD57 4116 aa5.85□□□□□ -1.47
CCDC50-201ENST00000392455 DNAH2Q9P225 4427 aa5.84□□□□□ -1.48
CCDC50-201ENST00000392455 DNAH9Q9NYC9 4486 aa5.8□□□□□ -1.48
CCDC50-201ENST00000392455 MT1HP80294 61 aa5.71□□□□□ -1.5
CCDC50-201ENST00000392455 LCE3CQ5T5A8 94 aa5.7□□□□□ -1.5
CCDC50-201ENST00000392455 ANK2Q01484 3957 aa5.68□□□□□ -1.5
CCDC50-201ENST00000392455 DNAH7Q8WXX0 4024 aa5.67□□□□□ -1.5
CCDC50-201ENST00000392455 KRTAP4-1Q9BYQ7 146 aa5.67□□□□□ -1.5
CCDC50-201ENST00000392455 FRAS1Q86XX4 4008 aa5.64□□□□□ -1.51
CCDC50-201ENST00000392455 SPRR2GQ9BYE4 73 aa5.64□□□□□ -1.51
CCDC50-201ENST00000392455 KMT2AQ03164 3969 aa5.61□□□□□ -1.51
CCDC50-201ENST00000392455 SPRR2FQ96RM1 72 aa5.6□□□□□ -1.51
CCDC50-201ENST00000392455 DNAH10Q8IVF4 4471 aa5.59□□□□□ -1.52
CCDC50-201ENST00000392455 VPS13BQ7Z7G8 4022 aa5.59□□□□□ -1.52
CCDC50-201ENST00000392455 CMYA5Q8N3K9 4069 aa5.57□□□□□ -1.52
CCDC50-201ENST00000392455 FAT2Q9NYQ8 4349 aa5.56□□□□□ -1.52
CCDC50-201ENST00000392455 MT2AP02795 61 aa5.56□□□□□ -1.52
CCDC50-201ENST00000392455 LYSTQ99698 3801 aa5.55□□□□□ -1.52
CCDC50-201ENST00000392455 KRTAP19-5Q3LI72 72 aa5.55□□□□□ -1.52
CCDC50-201ENST00000392455 MT3P25713 68 aa5.54□□□□□ -1.52
CCDC50-201ENST00000392455 DNAH11Q96DT5 4516 aa5.5□□□□□ -1.53
CCDC50-201ENST00000392455 DNAH5Q8TE73 4624 aa5.46□□□□□ -1.54
CCDC50-201ENST00000392455 DNAH8Q96JB1 4490 aa5.46□□□□□ -1.54
CCDC50-201ENST00000392455 MT1FP04733 61 aa5.45□□□□□ -1.54
CCDC50-201ENST00000392455 DNAH6Q9C0G6 4158 aa5.45□□□□□ -1.54
CCDC50-201ENST00000392455 KRTAP12-4P60329 112 aa5.45□□□□□ -1.54
CCDC50-201ENST00000392455 PLECQ15149 4684 aaKnown RBP5.44□□□□□ -1.54
CCDC50-201ENST00000392455 DYNC2H1Q8NCM8 4307 aaKnown RBP5.44□□□□□ -1.54
CCDC50-201ENST00000392455 VPS13DQ5THJ4 4388 aa5.42□□□□□ -1.54
CCDC50-201ENST00000392455 PRKDCP78527 4128 aaKnown RBP5.41□□□□□ -1.54
CCDC50-201ENST00000392455 DNAH17Q9UFH2 4485 aa5.37□□□□□ -1.55
CCDC50-201ENST00000392455 HECTD4Q9Y4D8 3996 aa5.37□□□□□ -1.55
CCDC50-201ENST00000392455 STARD9Q9P2P6 4700 aa5.34□□□□□ -1.56
CCDC50-201ENST00000392455 SPRR2EP22531 72 aa5.3□□□□□ -1.56
CCDC50-201ENST00000392455 SPRR2BP35325 72 aa5.3□□□□□ -1.56
CCDC50-201ENST00000392455 SPRR2AP35326 72 aa5.3□□□□□ -1.56
CCDC50-201ENST00000392455 LRP1BQ9NZR2 4599 aa5.26□□□□□ -1.57
CCDC50-201ENST00000392455 LCE3BQ5TA77 95 aa5.24□□□□□ -1.57
CCDC50-201ENST00000392455 LCE2BO14633 110 aa5.2□□□□□ -1.58
CCDC50-201ENST00000392455 LCE3DQ9BYE3 92 aa5.2□□□□□ -1.58
CCDC50-201ENST00000392455 SPRR2DP22532 72 aa5.13□□□□□ -1.59
CCDC50-201ENST00000392455 LCE3EQ5T5B0 92 aa5.13□□□□□ -1.59
CCDC50-201ENST00000392455 FAT1Q14517 4588 aa5.12□□□□□ -1.59
CCDC50-201ENST00000392455 DNHD1Q96M86 4753 aa5.08□□□□□ -1.6
CCDC50-201ENST00000392455 MT1GP13640 62 aa5.08□□□□□ -1.6
CCDC50-201ENST00000392455 SACSQ9NZJ4 4579 aa5.05□□□□□ -1.6
CCDC50-201ENST00000392455 KRTAP19-8Q3LI54 63 aa5.03□□□□□ -1.6
CCDC50-201ENST00000392455 DYNC1H1Q14204 4646 aaKnown RBP5.03□□□□□ -1.6
CCDC50-201ENST00000392455 MT1XP80297 61 aa5.01□□□□□ -1.61
CCDC50-201ENST00000392455 KRTAP19-1Q8IUB9 90 aa5.01□□□□□ -1.61
CCDC50-201ENST00000392455 FLGP20930 4061 aaPredicted RBP4.99□□□□□ -1.61
CCDC50-201ENST00000392455 APOBP04114 4563 aaKnown RBP4.95□□□□□ -1.62
CCDC50-201ENST00000392455 SPRR5A0A1B0GTR4 108 aa4.93□□□□□ -1.62
CCDC50-201ENST00000392455 RYR1P21817 5038 aa4.89□□□□□ -1.63
CCDC50-201ENST00000392455 KRTAP4-8A0A0G2JLE6 195 aa4.89□□□□□ -1.63
CCDC50-201ENST00000392455 KRTAP4-8Q9BYQ9 185 aa4.89□□□□□ -1.63
CCDC50-201ENST00000392455 FAT3Q8TDW7 4589 aa4.89□□□□□ -1.63
CCDC50-201ENST00000392455 LCE2CQ5TA81 110 aa4.88□□□□□ -1.63
CCDC50-201ENST00000392455 PKHD1L1Q86WI1 4243 aa4.87□□□□□ -1.63
CCDC50-201ENST00000392455 MT1BP07438 61 aa4.86□□□□□ -1.63
CCDC50-201ENST00000392455 KRTAP9-8Q9BYQ0 159 aa4.84□□□□□ -1.63
CCDC50-201ENST00000392455 LRP1Q07954 4544 aaKnown RBP4.84□□□□□ -1.63
CCDC50-201ENST00000392455 KRTAP17-1Q9BYP8 105 aa4.83□□□□□ -1.64
CCDC50-201ENST00000392455 PKD1P98161 4303 aa4.82□□□□□ -1.64
CCDC50-201ENST00000392455 MT1LQ93083 61 aa4.82□□□□□ -1.64
CCDC50-201ENST00000392455 PKHD1P08F94 4074 aa4.79□□□□□ -1.64
CCDC50-201ENST00000392455 HSPG2P98160 4391 aa4.75□□□□□ -1.65
CCDC50-201ENST00000392455 RYR3Q15413 4870 aa4.74□□□□□ -1.65
CCDC50-201ENST00000392455 KRTAP9-3Q9BYQ3 159 aa4.74□□□□□ -1.65
CCDC50-201ENST00000392455 LCE2DQ5TA82 110 aaPredicted RBP4.72□□□□□ -1.65
CCDC50-201ENST00000392455 KRTAP19-3Q7Z4W3 81 aa4.69□□□□□ -1.66
CCDC50-201ENST00000392455 MYCBP2O75592 4640 aa4.69□□□□□ -1.66
CCDC50-201ENST00000392455 LPAP08519 4548 aa4.68□□□□□ -1.66
CCDC50-201ENST00000392455 TNXBP22105 4242 aa4.68□□□□□ -1.66
CCDC50-201ENST00000392455 PRM1P04553 51 aa4.63□□□□□ -1.67
CCDC50-201ENST00000392455 KRTAP4-7Q9BYR0 210 aa4.62□□□□□ -1.67
CCDC50-201ENST00000392455 MT4P47944 62 aa4.59□□□□□ -1.67
CCDC50-201ENST00000392455 MT1EP04732 61 aa4.55□□□□□ -1.68
CCDC50-201ENST00000392455 KRTAP9-2Q9BYQ4 174 aa4.55□□□□□ -1.68
CCDC50-201ENST00000392455 LOC100996750A0A140TA64 210 aa4.44□□□□□ -1.7
CCDC50-201ENST00000392455 RYR2Q92736 4967 aa4.43□□□□□ -1.7
CCDC50-201ENST00000392455 LCE1BQ5T7P3 118 aa4.43□□□□□ -1.7
CCDC50-201ENST00000392455 LCE1DQ5T752 114 aa4.43□□□□□ -1.7
CCDC50-201ENST00000392455 MT1MQ8N339 61 aa4.42□□□□□ -1.7
CCDC50-201ENST00000392455 PCLOQ9Y6V0 5065 aa4.4□□□□□ -1.71
CCDC50-201ENST00000392455 KRTAP9-6A0A140TA67 174 aa4.38□□□□□ -1.71
CCDC50-201ENST00000392455 KIAA1109Q2LD37 5005 aa4.37□□□□□ -1.71
CCDC50-201ENST00000392455 KRTAP19-6Q3LI70 58 aa4.36□□□□□ -1.71
CCDC50-201ENST00000392455 LRP2P98164 4655 aa4.36□□□□□ -1.71
CCDC50-201ENST00000392455 HERC2O95714 4834 aa4.35□□□□□ -1.71
CCDC50-201ENST00000392455 KRTAP4-3Q9BYR4 195 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 230.6 ms