RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 ALMS1Q8TCU4 4167 aa5.46□□□□□ -1.54
CCDC88C-204ENST00000389857 LORP23490 312 aaPredicted RBP5.45□□□□□ -1.54
CCDC88C-204ENST00000389857 KRTAP10-5P60370 271 aa5.39□□□□□ -1.55
CCDC88C-204ENST00000389857 DNAH9Q9NYC9 4486 aa5.39□□□□□ -1.55
CCDC88C-204ENST00000389857 KRTAP8-1Q8IUC2 63 aa5.38□□□□□ -1.55
CCDC88C-204ENST00000389857 CSMD3Q7Z407 3707 aa5.37□□□□□ -1.55
CCDC88C-204ENST00000389857 KRTAP10-4P60372 401 aaPredicted RBP5.35□□□□□ -1.55
CCDC88C-204ENST00000389857 PLECQ15149 4684 aaKnown RBP5.35□□□□□ -1.55
CCDC88C-204ENST00000389857 KRTAP4-5Q9BYR2 181 aa5.34□□□□□ -1.55
CCDC88C-204ENST00000389857 VPS13DQ5THJ4 4388 aa5.3□□□□□ -1.56
CCDC88C-204ENST00000389857 DNAH17Q9UFH2 4485 aa5.28□□□□□ -1.56
CCDC88C-204ENST00000389857 DNAH10Q8IVF4 4471 aa5.26□□□□□ -1.57
CCDC88C-204ENST00000389857 DNAH1Q9P2D7 4330 aa5.26□□□□□ -1.57
CCDC88C-204ENST00000389857 DNAH3Q8TD57 4116 aa5.21□□□□□ -1.58
CCDC88C-204ENST00000389857 DNAH11Q96DT5 4516 aa5.2□□□□□ -1.58
CCDC88C-204ENST00000389857 STARD9Q9P2P6 4700 aa5.17□□□□□ -1.58
CCDC88C-204ENST00000389857 DNAH8Q96JB1 4490 aa5.16□□□□□ -1.58
CCDC88C-204ENST00000389857 DNAH5Q8TE73 4624 aa5.14□□□□□ -1.59
CCDC88C-204ENST00000389857 DNAH2Q9P225 4427 aa5.13□□□□□ -1.59
CCDC88C-204ENST00000389857 LRP1BQ9NZR2 4599 aa5.12□□□□□ -1.59
CCDC88C-204ENST00000389857 DYNC2H1Q8NCM8 4307 aaKnown RBP5.08□□□□□ -1.6
CCDC88C-204ENST00000389857 ANK2Q01484 3957 aa5.08□□□□□ -1.6
CCDC88C-204ENST00000389857 KRTAP10-7P60409 375 aaPredicted RBP5.04□□□□□ -1.6
CCDC88C-204ENST00000389857 DYNC1H1Q14204 4646 aaKnown RBP5.02□□□□□ -1.61
CCDC88C-204ENST00000389857 MT1HP80294 61 aa5.01□□□□□ -1.61
CCDC88C-204ENST00000389857 PRKDCP78527 4128 aaKnown RBP4.98□□□□□ -1.61
CCDC88C-204ENST00000389857 CMYA5Q8N3K9 4069 aa4.97□□□□□ -1.61
CCDC88C-204ENST00000389857 SACSQ9NZJ4 4579 aa4.96□□□□□ -1.61
CCDC88C-204ENST00000389857 SPRR2GQ9BYE4 73 aa4.96□□□□□ -1.62
CCDC88C-204ENST00000389857 SPRR2FQ96RM1 72 aa4.94□□□□□ -1.62
CCDC88C-204ENST00000389857 FAT1Q14517 4588 aa4.94□□□□□ -1.62
CCDC88C-204ENST00000389857 MT2AP02795 61 aa4.91□□□□□ -1.62
CCDC88C-204ENST00000389857 KRTAP19-5Q3LI72 72 aa4.91□□□□□ -1.62
CCDC88C-204ENST00000389857 LCE3CQ5T5A8 94 aa4.9□□□□□ -1.62
CCDC88C-204ENST00000389857 KRTAP4-1Q9BYQ7 146 aa4.9□□□□□ -1.63
CCDC88C-204ENST00000389857 KRTAP19-4Q3LI73 84 aa4.88□□□□□ -1.63
CCDC88C-204ENST00000389857 HECTD4Q9Y4D8 3996 aa4.87□□□□□ -1.63
CCDC88C-204ENST00000389857 FRAS1Q86XX4 4008 aa4.87□□□□□ -1.63
CCDC88C-204ENST00000389857 KMT2AQ03164 3969 aa4.86□□□□□ -1.63
CCDC88C-204ENST00000389857 DNAH6Q9C0G6 4158 aa4.82□□□□□ -1.64
CCDC88C-204ENST00000389857 KMT2CQ8NEZ4 4911 aaKnown RBP4.81□□□□□ -1.64
CCDC88C-204ENST00000389857 DNAH7Q8WXX0 4024 aa4.8□□□□□ -1.64
CCDC88C-204ENST00000389857 LYSTQ99698 3801 aa4.8□□□□□ -1.64
CCDC88C-204ENST00000389857 VPS13BQ7Z7G8 4022 aa4.78□□□□□ -1.64
CCDC88C-204ENST00000389857 KIAA1109Q2LD37 5005 aa4.78□□□□□ -1.64
CCDC88C-204ENST00000389857 MT1FP04733 61 aa4.78□□□□□ -1.64
CCDC88C-204ENST00000389857 HYDINQ4G0P3 5121 aa4.77□□□□□ -1.65
CCDC88C-204ENST00000389857 FAT2Q9NYQ8 4349 aa4.76□□□□□ -1.65
CCDC88C-204ENST00000389857 SPRR2EP22531 72 aa4.74□□□□□ -1.65
CCDC88C-204ENST00000389857 SPRR2BP35325 72 aa4.74□□□□□ -1.65
CCDC88C-204ENST00000389857 SPRR2AP35326 72 aa4.74□□□□□ -1.65
CCDC88C-204ENST00000389857 RYR1P21817 5038 aa4.74□□□□□ -1.65
CCDC88C-204ENST00000389857 RYR2Q92736 4967 aa4.73□□□□□ -1.65
CCDC88C-204ENST00000389857 RYR3Q15413 4870 aa4.72□□□□□ -1.65
CCDC88C-204ENST00000389857 APOBP04114 4563 aaKnown RBP4.72□□□□□ -1.65
CCDC88C-204ENST00000389857 MYCBP2O75592 4640 aa4.67□□□□□ -1.66
CCDC88C-204ENST00000389857 FAT3Q8TDW7 4589 aa4.65□□□□□ -1.67
CCDC88C-204ENST00000389857 EPPK1P58107 5090 aaKnown RBP4.63□□□□□ -1.67
CCDC88C-204ENST00000389857 LRP1Q07954 4544 aaKnown RBP4.61□□□□□ -1.67
CCDC88C-204ENST00000389857 LCE3BQ5TA77 95 aa4.6□□□□□ -1.67
CCDC88C-204ENST00000389857 PKD1P98161 4303 aa4.59□□□□□ -1.67
CCDC88C-204ENST00000389857 SPRR2DP22532 72 aa4.58□□□□□ -1.68
CCDC88C-204ENST00000389857 PKHD1P08F94 4074 aa4.53□□□□□ -1.68
CCDC88C-204ENST00000389857 LCE2BO14633 110 aa4.52□□□□□ -1.69
CCDC88C-204ENST00000389857 KRTAP17-1Q9BYP8 105 aa4.52□□□□□ -1.69
CCDC88C-204ENST00000389857 KRTAP19-8Q3LI54 63 aa4.52□□□□□ -1.69
CCDC88C-204ENST00000389857 KRTAP12-4P60329 112 aa4.52□□□□□ -1.69
CCDC88C-204ENST00000389857 PKHD1L1Q86WI1 4243 aa4.47□□□□□ -1.69
CCDC88C-204ENST00000389857 MT1GP13640 62 aa4.47□□□□□ -1.69
CCDC88C-204ENST00000389857 ABCA13Q86UQ4 5058 aa4.46□□□□□ -1.7
CCDC88C-204ENST00000389857 BIRC6Q9NR09 4857 aa4.46□□□□□ -1.7
CCDC88C-204ENST00000389857 LRP2P98164 4655 aa4.44□□□□□ -1.7
CCDC88C-204ENST00000389857 MT1XP80297 61 aa4.41□□□□□ -1.7
CCDC88C-204ENST00000389857 HERC2O95714 4834 aa4.41□□□□□ -1.7
CCDC88C-204ENST00000389857 PCLOQ9Y6V0 5065 aa4.4□□□□□ -1.7
CCDC88C-204ENST00000389857 KRTAP19-1Q8IUB9 90 aa4.4□□□□□ -1.7
CCDC88C-204ENST00000389857 HSPG2P98160 4391 aa4.37□□□□□ -1.71
CCDC88C-204ENST00000389857 LCE3DQ9BYE3 92 aa4.37□□□□□ -1.71
CCDC88C-204ENST00000389857 SPRR5A0A1B0GTR4 108 aa4.35□□□□□ -1.71
CCDC88C-204ENST00000389857 TNXBP22105 4242 aa4.29□□□□□ -1.72
CCDC88C-204ENST00000389857 LCE3EQ5T5B0 92 aa4.29□□□□□ -1.72
CCDC88C-204ENST00000389857 LCE2CQ5TA81 110 aa4.29□□□□□ -1.72
CCDC88C-204ENST00000389857 MT1BP07438 61 aa4.28□□□□□ -1.72
CCDC88C-204ENST00000389857 KRTAP19-2Q3LHN2 52 aa4.28□□□□□ -1.72
CCDC88C-204ENST00000389857 LCE2DQ5TA82 110 aaPredicted RBP4.24□□□□□ -1.73
CCDC88C-204ENST00000389857 HERC1Q15751 4861 aa4.24□□□□□ -1.73
CCDC88C-204ENST00000389857 KRTAP9-8Q9BYQ0 159 aa4.23□□□□□ -1.73
CCDC88C-204ENST00000389857 KRTAP4-8A0A0G2JLE6 195 aa4.21□□□□□ -1.74
CCDC88C-204ENST00000389857 KRTAP4-8Q9BYQ9 185 aa4.21□□□□□ -1.74
CCDC88C-204ENST00000389857 MUC17Q685J3 4493 aa4.2□□□□□ -1.74
CCDC88C-204ENST00000389857 MT4P47944 62 aa4.17□□□□□ -1.74
CCDC88C-204ENST00000389857 RNF213Q63HN8 5207 aa4.17□□□□□ -1.74
CCDC88C-204ENST00000389857 UBR4Q5T4S7 5183 aa4.16□□□□□ -1.74
CCDC88C-204ENST00000389857 KRTAP19-3Q7Z4W3 81 aa4.16□□□□□ -1.74
CCDC88C-204ENST00000389857 KRTAP9-3Q9BYQ3 159 aa4.16□□□□□ -1.74
CCDC88C-204ENST00000389857 MT1LQ93083 61 aa4.12□□□□□ -1.75
CCDC88C-204ENST00000389857 HMCN2Q8NDA2 5059 aa4.08□□□□□ -1.76
CCDC88C-204ENST00000389857 LPAP08519 4548 aa4.08□□□□□ -1.76
CCDC88C-204ENST00000389857 FLGP20930 4061 aaPredicted RBP4.04□□□□□ -1.76
CCDC88C-204ENST00000389857 MT3P25713 68 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms