RNA–Protein interactions for RNA: ENST00000375604.6

MCF2L-203, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

APPRIS P3 TSL 2 BASIC

Gene MCF2L, Length 6,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-203ENST00000375604 LORP23490 312 aaPredicted RBP7.52□□□□□ -1.2
MCF2L-203ENST00000375604 LCE3AQ5TA76 89 aa7.46□□□□□ -1.21
MCF2L-203ENST00000375604 DNAH1Q9P2D7 4330 aa7.45□□□□□ -1.22
MCF2L-203ENST00000375604 KRTAP12-3P60328 96 aa7.37□□□□□ -1.23
MCF2L-203ENST00000375604 DNAH10Q8IVF4 4471 aa7.36□□□□□ -1.23
MCF2L-203ENST00000375604 PLECQ15149 4684 aaKnown RBP7.24□□□□□ -1.25
MCF2L-203ENST00000375604 DNAH5Q8TE73 4624 aa7.21□□□□□ -1.25
MCF2L-203ENST00000375604 KRTAP4-1Q9BYQ7 146 aa7.19□□□□□ -1.26
MCF2L-203ENST00000375604 KRTAP8-1Q8IUC2 63 aa7.18□□□□□ -1.26
MCF2L-203ENST00000375604 DNAH3Q8TD57 4116 aa7.18□□□□□ -1.26
MCF2L-203ENST00000375604 DNAH2Q9P225 4427 aa7.15□□□□□ -1.26
MCF2L-203ENST00000375604 ANK2Q01484 3957 aa7.13□□□□□ -1.27
MCF2L-203ENST00000375604 KRTAP10-5P60370 271 aa7.12□□□□□ -1.27
MCF2L-203ENST00000375604 FRAS1Q86XX4 4008 aa7.07□□□□□ -1.28
MCF2L-203ENST00000375604 DNAH11Q96DT5 4516 aa7.07□□□□□ -1.28
MCF2L-203ENST00000375604 INE1O15225 51 aa7.06□□□□□ -1.28
MCF2L-203ENST00000375604 MT1HP80294 61 aa7.05□□□□□ -1.28
MCF2L-203ENST00000375604 KMT2AQ03164 3969 aa7.05□□□□□ -1.28
MCF2L-203ENST00000375604 STARD9Q9P2P6 4700 aa7.02□□□□□ -1.29
MCF2L-203ENST00000375604 VPS13DQ5THJ4 4388 aa7□□□□□ -1.29
MCF2L-203ENST00000375604 FAT2Q9NYQ8 4349 aa6.99□□□□□ -1.29
MCF2L-203ENST00000375604 DNAH17Q9UFH2 4485 aa6.99□□□□□ -1.29
MCF2L-203ENST00000375604 CMYA5Q8N3K9 4069 aa6.97□□□□□ -1.29
MCF2L-203ENST00000375604 LRP1BQ9NZR2 4599 aa6.94□□□□□ -1.3
MCF2L-203ENST00000375604 DNAH8Q96JB1 4490 aa6.91□□□□□ -1.3
MCF2L-203ENST00000375604 VPS13BQ7Z7G8 4022 aa6.88□□□□□ -1.31
MCF2L-203ENST00000375604 MT2AP02795 61 aa6.84□□□□□ -1.31
MCF2L-203ENST00000375604 DYNC2H1Q8NCM8 4307 aaKnown RBP6.84□□□□□ -1.32
MCF2L-203ENST00000375604 PRKDCP78527 4128 aaKnown RBP6.83□□□□□ -1.32
MCF2L-203ENST00000375604 LYSTQ99698 3801 aa6.83□□□□□ -1.32
MCF2L-203ENST00000375604 KRTAP23-1A1A580 65 aa6.81□□□□□ -1.32
MCF2L-203ENST00000375604 DYNC1H1Q14204 4646 aaKnown RBP6.8□□□□□ -1.32
MCF2L-203ENST00000375604 FAT1Q14517 4588 aa6.8□□□□□ -1.32
MCF2L-203ENST00000375604 MT1FP04733 61 aa6.78□□□□□ -1.32
MCF2L-203ENST00000375604 SPRR2FQ96RM1 72 aa6.77□□□□□ -1.33
MCF2L-203ENST00000375604 SACSQ9NZJ4 4579 aa6.76□□□□□ -1.33
MCF2L-203ENST00000375604 DNHD1Q96M86 4753 aa6.74□□□□□ -1.33
MCF2L-203ENST00000375604 DNAH7Q8WXX0 4024 aa6.74□□□□□ -1.33
MCF2L-203ENST00000375604 KRTAP19-5Q3LI72 72 aa6.71□□□□□ -1.34
MCF2L-203ENST00000375604 DNAH6Q9C0G6 4158 aa6.62□□□□□ -1.35
MCF2L-203ENST00000375604 SPRR2GQ9BYE4 73 aa6.6□□□□□ -1.35
MCF2L-203ENST00000375604 KRTAP17-1Q9BYP8 105 aa6.58□□□□□ -1.36
MCF2L-203ENST00000375604 KRTAP10-7P60409 375 aaPredicted RBP6.55□□□□□ -1.36
MCF2L-203ENST00000375604 RYR1P21817 5038 aa6.55□□□□□ -1.36
MCF2L-203ENST00000375604 APOBP04114 4563 aaKnown RBP6.54□□□□□ -1.36
MCF2L-203ENST00000375604 HECTD4Q9Y4D8 3996 aa6.5□□□□□ -1.37
MCF2L-203ENST00000375604 LCE3CQ5T5A8 94 aa6.45□□□□□ -1.38
MCF2L-203ENST00000375604 SPRR2EP22531 72 aa6.4□□□□□ -1.38
MCF2L-203ENST00000375604 SPRR2BP35325 72 aa6.4□□□□□ -1.38
MCF2L-203ENST00000375604 SPRR2AP35326 72 aa6.4□□□□□ -1.38
MCF2L-203ENST00000375604 FAT3Q8TDW7 4589 aa6.32□□□□□ -1.4
MCF2L-203ENST00000375604 LPAP08519 4548 aa6.31□□□□□ -1.4
MCF2L-203ENST00000375604 RYR3Q15413 4870 aa6.29□□□□□ -1.4
MCF2L-203ENST00000375604 LCE3BQ5TA77 95 aa6.28□□□□□ -1.4
MCF2L-203ENST00000375604 LRP1Q07954 4544 aaKnown RBP6.26□□□□□ -1.41
MCF2L-203ENST00000375604 MYCBP2O75592 4640 aa6.26□□□□□ -1.41
MCF2L-203ENST00000375604 HSPG2P98160 4391 aa6.26□□□□□ -1.41
MCF2L-203ENST00000375604 MT1GP13640 62 aa6.22□□□□□ -1.41
MCF2L-203ENST00000375604 KRTAP4-8A0A0G2JLE6 195 aa6.18□□□□□ -1.42
MCF2L-203ENST00000375604 KRTAP4-8Q9BYQ9 185 aa6.18□□□□□ -1.42
MCF2L-203ENST00000375604 KRTAP19-1Q8IUB9 90 aa6.17□□□□□ -1.42
MCF2L-203ENST00000375604 SPRR2DP22532 72 aa6.16□□□□□ -1.42
MCF2L-203ENST00000375604 MT1XP80297 61 aa6.14□□□□□ -1.43
MCF2L-203ENST00000375604 HYDINQ4G0P3 5121 aa6.13□□□□□ -1.43
MCF2L-203ENST00000375604 PKHD1P08F94 4074 aa6.09□□□□□ -1.43
MCF2L-203ENST00000375604 PKD1P98161 4303 aa6.06□□□□□ -1.44
MCF2L-203ENST00000375604 LCE2BO14633 110 aa6.04□□□□□ -1.44
MCF2L-203ENST00000375604 KRTAP19-8Q3LI54 63 aa6.03□□□□□ -1.44
MCF2L-203ENST00000375604 KRTAP9-8Q9BYQ0 159 aa6.03□□□□□ -1.44
MCF2L-203ENST00000375604 MT1BP07438 61 aa6.03□□□□□ -1.44
MCF2L-203ENST00000375604 PKHD1L1Q86WI1 4243 aa6□□□□□ -1.45
MCF2L-203ENST00000375604 TNXBP22105 4242 aa5.97□□□□□ -1.45
MCF2L-203ENST00000375604 LCE2CQ5TA81 110 aa5.88□□□□□ -1.47
MCF2L-203ENST00000375604 KRTAP9-3Q9BYQ3 159 aa5.88□□□□□ -1.47
MCF2L-203ENST00000375604 KRTAP4-7Q9BYR0 210 aa5.88□□□□□ -1.47
MCF2L-203ENST00000375604 KRTAP12-4P60329 112 aa5.85□□□□□ -1.47
MCF2L-203ENST00000375604 RYR2Q92736 4967 aa5.83□□□□□ -1.48
MCF2L-203ENST00000375604 LRP2P98164 4655 aa5.8□□□□□ -1.48
MCF2L-203ENST00000375604 KIAA1109Q2LD37 5005 aa5.79□□□□□ -1.48
MCF2L-203ENST00000375604 HERC2O95714 4834 aa5.66□□□□□ -1.5
MCF2L-203ENST00000375604 MT4P47944 62 aa5.65□□□□□ -1.51
MCF2L-203ENST00000375604 LCE3DQ9BYE3 92 aa5.64□□□□□ -1.51
MCF2L-203ENST00000375604 KRTAP19-4Q3LI73 84 aa5.61□□□□□ -1.51
MCF2L-203ENST00000375604 LOC100996750A0A140TA64 210 aa5.61□□□□□ -1.51
MCF2L-203ENST00000375604 HERC1Q15751 4861 aa5.61□□□□□ -1.51
MCF2L-203ENST00000375604 KMT2CQ8NEZ4 4911 aaKnown RBP5.61□□□□□ -1.51
MCF2L-203ENST00000375604 LCE2DQ5TA82 110 aaPredicted RBP5.61□□□□□ -1.51
MCF2L-203ENST00000375604 KRTAP19-3Q7Z4W3 81 aa5.59□□□□□ -1.51
MCF2L-203ENST00000375604 MUC17Q685J3 4493 aa5.58□□□□□ -1.52
MCF2L-203ENST00000375604 KRTAP4-3Q9BYR4 195 aa5.54□□□□□ -1.52
MCF2L-203ENST00000375604 BIRC6Q9NR09 4857 aa5.54□□□□□ -1.52
MCF2L-203ENST00000375604 MT1LQ93083 61 aa5.53□□□□□ -1.52
MCF2L-203ENST00000375604 MT1EP04732 61 aa5.49□□□□□ -1.53
MCF2L-203ENST00000375604 KRTAP19-2Q3LHN2 52 aa5.49□□□□□ -1.53
MCF2L-203ENST00000375604 KRTAP9-2Q9BYQ4 174 aa5.48□□□□□ -1.53
MCF2L-203ENST00000375604 LCE3EQ5T5B0 92 aa5.47□□□□□ -1.53
MCF2L-203ENST00000375604 FLGP20930 4061 aaPredicted RBP5.45□□□□□ -1.54
MCF2L-203ENST00000375604 PCLOQ9Y6V0 5065 aa5.44□□□□□ -1.54
MCF2L-203ENST00000375604 SPRR5A0A1B0GTR4 108 aa5.38□□□□□ -1.55
MCF2L-203ENST00000375604 MT1MQ8N339 61 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms