RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 KRTAP10-6P60371 365 aaPredicted RBP3.18□□□□□ -1.9
SMC1A-202ENST00000375340 PP632Q6XCG6 107 aa3.18□□□□□ -1.9
SMC1A-202ENST00000375340 STARD9Q9P2P6 4700 aa3.17□□□□□ -1.9
SMC1A-202ENST00000375340 DNAH2Q9P225 4427 aa3.17□□□□□ -1.9
SMC1A-202ENST00000375340 DNAH6Q9C0G6 4158 aa3.16□□□□□ -1.9
SMC1A-202ENST00000375340 VPS13DQ5THJ4 4388 aa3.15□□□□□ -1.91
SMC1A-202ENST00000375340 KRTAP3-3Q9BYR6 98 aa3.14□□□□□ -1.91
SMC1A-202ENST00000375340 DNAH17Q9UFH2 4485 aa3.14□□□□□ -1.91
SMC1A-202ENST00000375340 DNAH11Q96DT5 4516 aa3.13□□□□□ -1.91
SMC1A-202ENST00000375340 VPS13BQ7Z7G8 4022 aa3.13□□□□□ -1.91
SMC1A-202ENST00000375340 PRKDCP78527 4128 aaKnown RBP3.12□□□□□ -1.91
SMC1A-202ENST00000375340 KRTAP3-2Q9BYR7 98 aa3.11□□□□□ -1.91
SMC1A-202ENST00000375340 DNAH8Q96JB1 4490 aa3.11□□□□□ -1.91
SMC1A-202ENST00000375340 KRTAP10-10P60014 251 aa3.1□□□□□ -1.91
SMC1A-202ENST00000375340 KRTAP10-4P60372 401 aaPredicted RBP3.09□□□□□ -1.92
SMC1A-202ENST00000375340 KRTAP15-1Q3LI76 137 aa3.07□□□□□ -1.92
SMC1A-202ENST00000375340 MT1HL1P0DM35 61 aa3.03□□□□□ -1.92
SMC1A-202ENST00000375340 FAT2Q9NYQ8 4349 aa3.02□□□□□ -1.93
SMC1A-202ENST00000375340 DNAH5Q8TE73 4624 aa3.01□□□□□ -1.93
SMC1A-202ENST00000375340 KRTAP4-5Q9BYR2 181 aa3.01□□□□□ -1.93
SMC1A-202ENST00000375340 KRTAP23-1A1A580 65 aa2.99□□□□□ -1.93
SMC1A-202ENST00000375340 LORP23490 312 aaPredicted RBP2.97□□□□□ -1.93
SMC1A-202ENST00000375340 PKD1P98161 4303 aa2.94□□□□□ -1.94
SMC1A-202ENST00000375340 LRP1BQ9NZR2 4599 aa2.92□□□□□ -1.94
SMC1A-202ENST00000375340 PRO2289Q9P1D8 64 aa2.92□□□□□ -1.94
SMC1A-202ENST00000375340 PKHD1L1Q86WI1 4243 aa2.9□□□□□ -1.95
SMC1A-202ENST00000375340 SACSQ9NZJ4 4579 aa2.88□□□□□ -1.95
SMC1A-202ENST00000375340 PKHD1P08F94 4074 aa2.86□□□□□ -1.95
SMC1A-202ENST00000375340 DYNC1H1Q14204 4646 aaKnown RBP2.86□□□□□ -1.95
SMC1A-202ENST00000375340 KRTAP4-1Q9BYQ7 146 aa2.84□□□□□ -1.95
SMC1A-202ENST00000375340 LCE3AQ5TA76 89 aa2.83□□□□□ -1.96
SMC1A-202ENST00000375340 APOBP04114 4563 aaKnown RBP2.83□□□□□ -1.96
SMC1A-202ENST00000375340 HYDINQ4G0P3 5121 aa2.83□□□□□ -1.96
SMC1A-202ENST00000375340 TNXBP22105 4242 aa2.82□□□□□ -1.96
SMC1A-202ENST00000375340 KRTAP19-4Q3LI73 84 aa2.81□□□□□ -1.96
SMC1A-202ENST00000375340 KRTAP10-12P60413 245 aa2.79□□□□□ -1.96
SMC1A-202ENST00000375340 FAT1Q14517 4588 aa2.79□□□□□ -1.96
SMC1A-202ENST00000375340 INE1O15225 51 aa2.78□□□□□ -1.96
SMC1A-202ENST00000375340 KRTAP17-1Q9BYP8 105 aa2.77□□□□□ -1.97
SMC1A-202ENST00000375340 DNHD1Q96M86 4753 aa2.73□□□□□ -1.97
SMC1A-202ENST00000375340 FAT3Q8TDW7 4589 aa2.73□□□□□ -1.97
SMC1A-202ENST00000375340 HSPG2P98160 4391 aa2.73□□□□□ -1.97
SMC1A-202ENST00000375340 KRTAP12-3P60328 96 aa2.72□□□□□ -1.97
SMC1A-202ENST00000375340 MT3P25713 68 aa2.71□□□□□ -1.98
SMC1A-202ENST00000375340 CRCT1Q9UGL9 99 aa2.7□□□□□ -1.98
SMC1A-202ENST00000375340 LRP1Q07954 4544 aaKnown RBP2.69□□□□□ -1.98
SMC1A-202ENST00000375340 LPAP08519 4548 aa2.68□□□□□ -1.98
SMC1A-202ENST00000375340 MT1HP80294 61 aa2.66□□□□□ -1.98
SMC1A-202ENST00000375340 MYCBP2O75592 4640 aa2.61□□□□□ -1.99
SMC1A-202ENST00000375340 MT1FP04733 61 aa2.6□□□□□ -1.99
SMC1A-202ENST00000375340 MT2AP02795 61 aa2.6□□□□□ -1.99
SMC1A-202ENST00000375340 RYR3Q15413 4870 aa2.59□□□□□ -1.99
SMC1A-202ENST00000375340 SPRR2GQ9BYE4 73 aa2.58□□□□□ -2
SMC1A-202ENST00000375340 RYR2Q92736 4967 aa2.57□□□□□ -2
SMC1A-202ENST00000375340 RYR1P21817 5038 aa2.56□□□□□ -2
SMC1A-202ENST00000375340 KRTAP19-5Q3LI72 72 aa2.54□□□□□ -2
SMC1A-202ENST00000375340 FLGP20930 4061 aaPredicted RBP2.53□□□□□ -2
SMC1A-202ENST00000375340 MUC17Q685J3 4493 aa2.53□□□□□ -2.01
SMC1A-202ENST00000375340 KRTAP10-7P60409 375 aaPredicted RBP2.52□□□□□ -2.01
SMC1A-202ENST00000375340 KMT2CQ8NEZ4 4911 aaKnown RBP2.51□□□□□ -2.01
SMC1A-202ENST00000375340 KRTAP10-5P60370 271 aa2.48□□□□□ -2.01
SMC1A-202ENST00000375340 LRP2P98164 4655 aa2.48□□□□□ -2.01
SMC1A-202ENST00000375340 LCE3CQ5T5A8 94 aa2.48□□□□□ -2.01
SMC1A-202ENST00000375340 KRTAP8-1Q8IUC2 63 aa2.47□□□□□ -2.01
SMC1A-202ENST00000375340 KRTAP19-1Q8IUB9 90 aa2.47□□□□□ -2.01
SMC1A-202ENST00000375340 MT1XP80297 61 aa2.45□□□□□ -2.02
SMC1A-202ENST00000375340 LCE2CQ5TA81 110 aa2.4□□□□□ -2.02
SMC1A-202ENST00000375340 MT1BP07438 61 aa2.39□□□□□ -2.03
SMC1A-202ENST00000375340 SPRR5A0A1B0GTR4 108 aa2.38□□□□□ -2.03
SMC1A-202ENST00000375340 KRTAP9-8Q9BYQ0 159 aa2.38□□□□□ -2.03
SMC1A-202ENST00000375340 KRTAP19-2Q3LHN2 52 aa2.38□□□□□ -2.03
SMC1A-202ENST00000375340 KRTAP19-8Q3LI54 63 aa2.38□□□□□ -2.03
SMC1A-202ENST00000375340 KIAA1109Q2LD37 5005 aa2.36□□□□□ -2.03
SMC1A-202ENST00000375340 KRTAP4-8A0A0G2JLE6 195 aa2.35□□□□□ -2.03
SMC1A-202ENST00000375340 KRTAP4-8Q9BYQ9 185 aa2.35□□□□□ -2.03
SMC1A-202ENST00000375340 KRTAP9-3Q9BYQ3 159 aa2.31□□□□□ -2.04
SMC1A-202ENST00000375340 SPRR2FQ96RM1 72 aa2.31□□□□□ -2.04
SMC1A-202ENST00000375340 PCLOQ9Y6V0 5065 aa2.3□□□□□ -2.04
SMC1A-202ENST00000375340 MT1GP13640 62 aa2.29□□□□□ -2.04
SMC1A-202ENST00000375340 KRTAP4-7Q9BYR0 210 aa2.29□□□□□ -2.04
SMC1A-202ENST00000375340 EPPK1P58107 5090 aaKnown RBP2.28□□□□□ -2.05
SMC1A-202ENST00000375340 LCE3BQ5TA77 95 aa2.27□□□□□ -2.05
SMC1A-202ENST00000375340 ABCA13Q86UQ4 5058 aa2.27□□□□□ -2.05
SMC1A-202ENST00000375340 HERC2O95714 4834 aa2.23□□□□□ -2.05
SMC1A-202ENST00000375340 HERC1Q15751 4861 aa2.23□□□□□ -2.05
SMC1A-202ENST00000375340 LCE2BO14633 110 aa2.22□□□□□ -2.05
SMC1A-202ENST00000375340 LCE2DQ5TA82 110 aaPredicted RBP2.22□□□□□ -2.05
SMC1A-202ENST00000375340 BIRC6Q9NR09 4857 aa2.19□□□□□ -2.06
SMC1A-202ENST00000375340 LOC100996750A0A140TA64 210 aa2.19□□□□□ -2.06
SMC1A-202ENST00000375340 KRTAP12-4P60329 112 aa2.18□□□□□ -2.06
SMC1A-202ENST00000375340 MT1LQ93083 61 aa2.17□□□□□ -2.06
SMC1A-202ENST00000375340 SPRR2EP22531 72 aa2.15□□□□□ -2.06
SMC1A-202ENST00000375340 SPRR2BP35325 72 aa2.15□□□□□ -2.06
SMC1A-202ENST00000375340 SPRR2AP35326 72 aa2.15□□□□□ -2.06
SMC1A-202ENST00000375340 KRTAP4-3Q9BYR4 195 aa2.15□□□□□ -2.07
SMC1A-202ENST00000375340 MT1EP04732 61 aa2.14□□□□□ -2.07
SMC1A-202ENST00000375340 MUC2Q02817 5179 aa2.12□□□□□ -2.07
SMC1A-202ENST00000375340 HMCN2Q8NDA2 5059 aa2.09□□□□□ -2.07
SMC1A-202ENST00000375340 KRTAP19-3Q7Z4W3 81 aa2.08□□□□□ -2.08
SMC1A-202ENST00000375340 SPRR2DP22532 72 aa2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms