RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 LCE3AQ5TA76 89 aa4.26□□□□□ -1.73
COL4A6-202ENST00000372216 KRTAP8-1Q8IUC2 63 aa4.25□□□□□ -1.73
COL4A6-202ENST00000372216 KRTAP12-3P60328 96 aa4.22□□□□□ -1.73
COL4A6-202ENST00000372216 ZNF469Q96JG9 3925 aaPredicted RBP4.2□□□□□ -1.74
COL4A6-202ENST00000372216 DNAH5Q8TE73 4624 aa4.19□□□□□ -1.74
COL4A6-202ENST00000372216 COL7A1Q02388 2944 aa4.18□□□□□ -1.74
COL4A6-202ENST00000372216 PLECQ15149 4684 aaKnown RBP4.16□□□□□ -1.74
COL4A6-202ENST00000372216 DNAH2Q9P225 4427 aa4.16□□□□□ -1.74
COL4A6-202ENST00000372216 DNAH3Q8TD57 4116 aa4.15□□□□□ -1.75
COL4A6-202ENST00000372216 SRRM2Q9UQ35 2752 aaKnown RBP4.15□□□□□ -1.75
COL4A6-202ENST00000372216 DNAH10Q8IVF4 4471 aa4.14□□□□□ -1.75
COL4A6-202ENST00000372216 VPS13DQ5THJ4 4388 aa4.14□□□□□ -1.75
COL4A6-202ENST00000372216 DNAH11Q96DT5 4516 aa4.13□□□□□ -1.75
COL4A6-202ENST00000372216 DNAH17Q9UFH2 4485 aa4.12□□□□□ -1.75
COL4A6-202ENST00000372216 CSMD3Q7Z407 3707 aa4.11□□□□□ -1.75
COL4A6-202ENST00000372216 KRTAP4-1Q9BYQ7 146 aa4.1□□□□□ -1.75
COL4A6-202ENST00000372216 MT1HP80294 61 aa4.09□□□□□ -1.76
COL4A6-202ENST00000372216 FAT2Q9NYQ8 4349 aa4.07□□□□□ -1.76
COL4A6-202ENST00000372216 KRTAP23-1A1A580 65 aa4.04□□□□□ -1.76
COL4A6-202ENST00000372216 DYNC1H1Q14204 4646 aaKnown RBP4.03□□□□□ -1.76
COL4A6-202ENST00000372216 DYNC2H1Q8NCM8 4307 aaKnown RBP4.03□□□□□ -1.76
COL4A6-202ENST00000372216 SPRR2FQ96RM1 72 aa4.01□□□□□ -1.77
COL4A6-202ENST00000372216 LRP1BQ9NZR2 4599 aa4.01□□□□□ -1.77
COL4A6-202ENST00000372216 ANK2Q01484 3957 aa4.01□□□□□ -1.77
COL4A6-202ENST00000372216 STARD9Q9P2P6 4700 aa4□□□□□ -1.77
COL4A6-202ENST00000372216 DNAH6Q9C0G6 4158 aa3.99□□□□□ -1.77
COL4A6-202ENST00000372216 CMYA5Q8N3K9 4069 aa3.98□□□□□ -1.77
COL4A6-202ENST00000372216 MT2AP02795 61 aa3.97□□□□□ -1.77
COL4A6-202ENST00000372216 SACSQ9NZJ4 4579 aa3.96□□□□□ -1.78
COL4A6-202ENST00000372216 DNHD1Q96M86 4753 aa3.95□□□□□ -1.78
COL4A6-202ENST00000372216 PRKDCP78527 4128 aaKnown RBP3.93□□□□□ -1.78
COL4A6-202ENST00000372216 DNAH7Q8WXX0 4024 aa3.92□□□□□ -1.78
COL4A6-202ENST00000372216 DNAH8Q96JB1 4490 aa3.91□□□□□ -1.78
COL4A6-202ENST00000372216 KRTAP10-7P60409 375 aaPredicted RBP3.91□□□□□ -1.78
COL4A6-202ENST00000372216 MT1FP04733 61 aa3.89□□□□□ -1.79
COL4A6-202ENST00000372216 KMT2AQ03164 3969 aa3.89□□□□□ -1.79
COL4A6-202ENST00000372216 SPRR2GQ9BYE4 73 aa3.88□□□□□ -1.79
COL4A6-202ENST00000372216 FAT1Q14517 4588 aa3.85□□□□□ -1.79
COL4A6-202ENST00000372216 SPRR2EP22531 72 aa3.85□□□□□ -1.79
COL4A6-202ENST00000372216 SPRR2BP35325 72 aa3.85□□□□□ -1.79
COL4A6-202ENST00000372216 SPRR2AP35326 72 aa3.85□□□□□ -1.79
COL4A6-202ENST00000372216 VPS13BQ7Z7G8 4022 aa3.84□□□□□ -1.8
COL4A6-202ENST00000372216 KRTAP19-5Q3LI72 72 aa3.81□□□□□ -1.8
COL4A6-202ENST00000372216 RYR1P21817 5038 aa3.8□□□□□ -1.8
COL4A6-202ENST00000372216 APOBP04114 4563 aaKnown RBP3.77□□□□□ -1.81
COL4A6-202ENST00000372216 KRTAP17-1Q9BYP8 105 aa3.77□□□□□ -1.81
COL4A6-202ENST00000372216 FRAS1Q86XX4 4008 aa3.77□□□□□ -1.81
COL4A6-202ENST00000372216 RYR3Q15413 4870 aa3.74□□□□□ -1.81
COL4A6-202ENST00000372216 FAT3Q8TDW7 4589 aa3.73□□□□□ -1.81
COL4A6-202ENST00000372216 BIRC6Q9NR09 4857 aa3.73□□□□□ -1.81
COL4A6-202ENST00000372216 LCE3BQ5TA77 95 aa3.71□□□□□ -1.81
COL4A6-202ENST00000372216 SPRR2DP22532 72 aa3.71□□□□□ -1.82
COL4A6-202ENST00000372216 HECTD4Q9Y4D8 3996 aa3.69□□□□□ -1.82
COL4A6-202ENST00000372216 LYSTQ99698 3801 aa3.69□□□□□ -1.82
COL4A6-202ENST00000372216 LCE3CQ5T5A8 94 aa3.66□□□□□ -1.82
COL4A6-202ENST00000372216 RYR2Q92736 4967 aa3.65□□□□□ -1.82
COL4A6-202ENST00000372216 HSPG2P98160 4391 aa3.62□□□□□ -1.83
COL4A6-202ENST00000372216 PKHD1L1Q86WI1 4243 aa3.61□□□□□ -1.83
COL4A6-202ENST00000372216 SPRR5A0A1B0GTR4 108 aa3.61□□□□□ -1.83
COL4A6-202ENST00000372216 KRTAP19-8Q3LI54 63 aa3.6□□□□□ -1.83
COL4A6-202ENST00000372216 MT1GP13640 62 aa3.59□□□□□ -1.83
COL4A6-202ENST00000372216 HERC1Q15751 4861 aa3.59□□□□□ -1.83
COL4A6-202ENST00000372216 LCE2BO14633 110 aa3.58□□□□□ -1.84
COL4A6-202ENST00000372216 KRTAP19-1Q8IUB9 90 aa3.58□□□□□ -1.84
COL4A6-202ENST00000372216 MT1XP80297 61 aa3.53□□□□□ -1.84
COL4A6-202ENST00000372216 KRTAP9-8Q9BYQ0 159 aa3.53□□□□□ -1.84
COL4A6-202ENST00000372216 LRP1Q07954 4544 aaKnown RBP3.51□□□□□ -1.85
COL4A6-202ENST00000372216 MT1BP07438 61 aa3.5□□□□□ -1.85
COL4A6-202ENST00000372216 KRTAP19-4Q3LI73 84 aa3.5□□□□□ -1.85
COL4A6-202ENST00000372216 HYDINQ4G0P3 5121 aa3.49□□□□□ -1.85
COL4A6-202ENST00000372216 MYCBP2O75592 4640 aa3.49□□□□□ -1.85
COL4A6-202ENST00000372216 KIAA1109Q2LD37 5005 aa3.49□□□□□ -1.85
COL4A6-202ENST00000372216 LCE2CQ5TA81 110 aa3.47□□□□□ -1.85
COL4A6-202ENST00000372216 KRTAP9-3Q9BYQ3 159 aa3.46□□□□□ -1.86
COL4A6-202ENST00000372216 KRTAP12-4P60329 112 aa3.46□□□□□ -1.86
COL4A6-202ENST00000372216 PKD1P98161 4303 aa3.45□□□□□ -1.86
COL4A6-202ENST00000372216 KRTAP4-8A0A0G2JLE6 195 aa3.44□□□□□ -1.86
COL4A6-202ENST00000372216 KRTAP4-8Q9BYQ9 185 aa3.44□□□□□ -1.86
COL4A6-202ENST00000372216 TNXBP22105 4242 aa3.43□□□□□ -1.86
COL4A6-202ENST00000372216 HERC2O95714 4834 aa3.43□□□□□ -1.86
COL4A6-202ENST00000372216 LPAP08519 4548 aa3.43□□□□□ -1.86
COL4A6-202ENST00000372216 MT4P47944 62 aa3.42□□□□□ -1.86
COL4A6-202ENST00000372216 PCLOQ9Y6V0 5065 aa3.4□□□□□ -1.86
COL4A6-202ENST00000372216 PKHD1P08F94 4074 aa3.4□□□□□ -1.87
COL4A6-202ENST00000372216 LCE2DQ5TA82 110 aaPredicted RBP3.39□□□□□ -1.87
COL4A6-202ENST00000372216 MUC17Q685J3 4493 aa3.39□□□□□ -1.87
COL4A6-202ENST00000372216 LCE3DQ9BYE3 92 aa3.27□□□□□ -1.89
COL4A6-202ENST00000372216 KRTAP19-2Q3LHN2 52 aa3.27□□□□□ -1.89
COL4A6-202ENST00000372216 KRTAP4-7Q9BYR0 210 aa3.27□□□□□ -1.89
COL4A6-202ENST00000372216 LRP2P98164 4655 aa3.27□□□□□ -1.89
COL4A6-202ENST00000372216 KRTAP19-3Q7Z4W3 81 aa3.25□□□□□ -1.89
COL4A6-202ENST00000372216 LCE1BQ5T7P3 118 aa3.25□□□□□ -1.89
COL4A6-202ENST00000372216 KRTAP9-2Q9BYQ4 174 aa3.25□□□□□ -1.89
COL4A6-202ENST00000372216 LCE3EQ5T5B0 92 aa3.22□□□□□ -1.89
COL4A6-202ENST00000372216 FLGP20930 4061 aaPredicted RBP3.22□□□□□ -1.89
COL4A6-202ENST00000372216 ABCA13Q86UQ4 5058 aa3.21□□□□□ -1.9
COL4A6-202ENST00000372216 KMT2CQ8NEZ4 4911 aaKnown RBP3.2□□□□□ -1.9
COL4A6-202ENST00000372216 MT1LQ93083 61 aa3.19□□□□□ -1.9
COL4A6-202ENST00000372216 LCE1DQ5T752 114 aa3.19□□□□□ -1.9
COL4A6-202ENST00000372216 KRTAP9-6A0A140TA67 174 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms