RNA–Protein interactions for RNA: ENST00000370544.9

LMO4-202, Transcript of LIM domain only 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMO4, Length 5,405 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4-202ENST00000370544 LCE3AQ5TA76 89 aa8.38□□□□□ -1.07
LMO4-202ENST00000370544 KRTAP23-1A1A580 65 aa8.37□□□□□ -1.07
LMO4-202ENST00000370544 INE1O15225 51 aa8.33□□□□□ -1.08
LMO4-202ENST00000370544 DNAH1Q9P2D7 4330 aa8.31□□□□□ -1.08
LMO4-202ENST00000370544 AKAP9Q99996 3911 aa8.26□□□□□ -1.09
LMO4-202ENST00000370544 DNAH10Q8IVF4 4471 aa8.21□□□□□ -1.1
LMO4-202ENST00000370544 CSMD3Q7Z407 3707 aa8.2□□□□□ -1.1
LMO4-202ENST00000370544 PLECQ15149 4684 aaKnown RBP8.2□□□□□ -1.1
LMO4-202ENST00000370544 ZNF469Q96JG9 3925 aaPredicted RBP8.16□□□□□ -1.1
LMO4-202ENST00000370544 DNAH11Q96DT5 4516 aa8.15□□□□□ -1.1
LMO4-202ENST00000370544 KRTAP4-1Q9BYQ7 146 aa8.15□□□□□ -1.11
LMO4-202ENST00000370544 DNAH2Q9P225 4427 aa8.11□□□□□ -1.11
LMO4-202ENST00000370544 DNAH17Q9UFH2 4485 aa8.1□□□□□ -1.11
LMO4-202ENST00000370544 VPS13DQ5THJ4 4388 aa8.09□□□□□ -1.11
LMO4-202ENST00000370544 KRTAP8-1Q8IUC2 63 aa8.05□□□□□ -1.12
LMO4-202ENST00000370544 MT1HP80294 61 aa8.04□□□□□ -1.12
LMO4-202ENST00000370544 DYNC1H1Q14204 4646 aaKnown RBP7.97□□□□□ -1.13
LMO4-202ENST00000370544 DNHD1Q96M86 4753 aa7.93□□□□□ -1.14
LMO4-202ENST00000370544 MT2AP02795 61 aa7.91□□□□□ -1.14
LMO4-202ENST00000370544 LRP1BQ9NZR2 4599 aa7.91□□□□□ -1.14
LMO4-202ENST00000370544 DNAH3Q8TD57 4116 aa7.87□□□□□ -1.15
LMO4-202ENST00000370544 SPRR2GQ9BYE4 73 aa7.85□□□□□ -1.15
LMO4-202ENST00000370544 STARD9Q9P2P6 4700 aa7.83□□□□□ -1.16
LMO4-202ENST00000370544 SACSQ9NZJ4 4579 aa7.83□□□□□ -1.16
LMO4-202ENST00000370544 FAT2Q9NYQ8 4349 aa7.82□□□□□ -1.16
LMO4-202ENST00000370544 DYNC2H1Q8NCM8 4307 aaKnown RBP7.81□□□□□ -1.16
LMO4-202ENST00000370544 KRTAP10-5P60370 271 aa7.79□□□□□ -1.16
LMO4-202ENST00000370544 FAT1Q14517 4588 aa7.77□□□□□ -1.17
LMO4-202ENST00000370544 MT1FP04733 61 aa7.75□□□□□ -1.17
LMO4-202ENST00000370544 RYR1P21817 5038 aa7.7□□□□□ -1.18
LMO4-202ENST00000370544 DNAH8Q96JB1 4490 aa7.66□□□□□ -1.18
LMO4-202ENST00000370544 ANK2Q01484 3957 aa7.59□□□□□ -1.19
LMO4-202ENST00000370544 APOBP04114 4563 aaKnown RBP7.57□□□□□ -1.2
LMO4-202ENST00000370544 PRKDCP78527 4128 aaKnown RBP7.55□□□□□ -1.2
LMO4-202ENST00000370544 KRTAP19-5Q3LI72 72 aa7.55□□□□□ -1.2
LMO4-202ENST00000370544 SPRR2FQ96RM1 72 aa7.48□□□□□ -1.21
LMO4-202ENST00000370544 KMT2AQ03164 3969 aa7.48□□□□□ -1.21
LMO4-202ENST00000370544 VPS13BQ7Z7G8 4022 aa7.44□□□□□ -1.22
LMO4-202ENST00000370544 DNAH6Q9C0G6 4158 aa7.44□□□□□ -1.22
LMO4-202ENST00000370544 RYR3Q15413 4870 aa7.42□□□□□ -1.22
LMO4-202ENST00000370544 LCE3CQ5T5A8 94 aa7.41□□□□□ -1.22
LMO4-202ENST00000370544 KRTAP10-7P60409 375 aaPredicted RBP7.39□□□□□ -1.23
LMO4-202ENST00000370544 KRTAP17-1Q9BYP8 105 aa7.39□□□□□ -1.23
LMO4-202ENST00000370544 DNAH7Q8WXX0 4024 aa7.34□□□□□ -1.23
LMO4-202ENST00000370544 KRTAP19-8Q3LI54 63 aa7.29□□□□□ -1.24
LMO4-202ENST00000370544 FAT3Q8TDW7 4589 aa7.29□□□□□ -1.24
LMO4-202ENST00000370544 KRTAP19-1Q8IUB9 90 aa7.27□□□□□ -1.24
LMO4-202ENST00000370544 CMYA5Q8N3K9 4069 aa7.26□□□□□ -1.25
LMO4-202ENST00000370544 LYSTQ99698 3801 aa7.26□□□□□ -1.25
LMO4-202ENST00000370544 KRTAP19-4Q3LI73 84 aa7.25□□□□□ -1.25
LMO4-202ENST00000370544 RYR2Q92736 4967 aa7.21□□□□□ -1.26
LMO4-202ENST00000370544 KIAA1109Q2LD37 5005 aa7.18□□□□□ -1.26
LMO4-202ENST00000370544 FRAS1Q86XX4 4008 aa7.17□□□□□ -1.26
LMO4-202ENST00000370544 MYCBP2O75592 4640 aa7.15□□□□□ -1.26
LMO4-202ENST00000370544 MT1XP80297 61 aa7.12□□□□□ -1.27
LMO4-202ENST00000370544 HECTD4Q9Y4D8 3996 aa7.09□□□□□ -1.27
LMO4-202ENST00000370544 LRP1Q07954 4544 aaKnown RBP7.07□□□□□ -1.28
LMO4-202ENST00000370544 MT1BP07438 61 aa7.05□□□□□ -1.28
LMO4-202ENST00000370544 HERC1Q15751 4861 aa7.05□□□□□ -1.28
LMO4-202ENST00000370544 KRTAP9-8Q9BYQ0 159 aa7.04□□□□□ -1.28
LMO4-202ENST00000370544 SPRR2EP22531 72 aa7.03□□□□□ -1.28
LMO4-202ENST00000370544 SPRR2BP35325 72 aa7.03□□□□□ -1.28
LMO4-202ENST00000370544 SPRR2AP35326 72 aa7.03□□□□□ -1.28
LMO4-202ENST00000370544 HSPG2P98160 4391 aa6.94□□□□□ -1.3
LMO4-202ENST00000370544 LCE2CQ5TA81 110 aa6.93□□□□□ -1.3
LMO4-202ENST00000370544 KRTAP9-3Q9BYQ3 159 aa6.89□□□□□ -1.31
LMO4-202ENST00000370544 HERC2O95714 4834 aa6.85□□□□□ -1.31
LMO4-202ENST00000370544 MT1GP13640 62 aa6.85□□□□□ -1.31
LMO4-202ENST00000370544 BIRC6Q9NR09 4857 aa6.85□□□□□ -1.31
LMO4-202ENST00000370544 LCE3BQ5TA77 95 aa6.84□□□□□ -1.31
LMO4-202ENST00000370544 PKD1P98161 4303 aa6.84□□□□□ -1.31
LMO4-202ENST00000370544 KRTAP4-8A0A0G2JLE6 195 aa6.83□□□□□ -1.32
LMO4-202ENST00000370544 KRTAP4-8Q9BYQ9 185 aa6.83□□□□□ -1.32
LMO4-202ENST00000370544 HYDINQ4G0P3 5121 aa6.81□□□□□ -1.32
LMO4-202ENST00000370544 SPRR2DP22532 72 aa6.8□□□□□ -1.32
LMO4-202ENST00000370544 PKHD1L1Q86WI1 4243 aa6.78□□□□□ -1.32
LMO4-202ENST00000370544 LCE2BO14633 110 aa6.77□□□□□ -1.33
LMO4-202ENST00000370544 LRP2P98164 4655 aa6.7□□□□□ -1.34
LMO4-202ENST00000370544 PCLOQ9Y6V0 5065 aa6.66□□□□□ -1.34
LMO4-202ENST00000370544 SPRR5A0A1B0GTR4 108 aa6.66□□□□□ -1.34
LMO4-202ENST00000370544 LPAP08519 4548 aa6.63□□□□□ -1.35
LMO4-202ENST00000370544 KRTAP12-4P60329 112 aa6.61□□□□□ -1.35
LMO4-202ENST00000370544 PKHD1P08F94 4074 aa6.61□□□□□ -1.35
LMO4-202ENST00000370544 KRTAP19-2Q3LHN2 52 aa6.59□□□□□ -1.35
LMO4-202ENST00000370544 TNXBP22105 4242 aa6.51□□□□□ -1.37
LMO4-202ENST00000370544 KRTAP19-3Q7Z4W3 81 aa6.51□□□□□ -1.37
LMO4-202ENST00000370544 MT1LQ93083 61 aa6.45□□□□□ -1.38
LMO4-202ENST00000370544 LCE3DQ9BYE3 92 aa6.43□□□□□ -1.38
LMO4-202ENST00000370544 KMT2CQ8NEZ4 4911 aaKnown RBP6.43□□□□□ -1.38
LMO4-202ENST00000370544 KRTAP4-7Q9BYR0 210 aa6.42□□□□□ -1.38
LMO4-202ENST00000370544 MT1EP04732 61 aa6.41□□□□□ -1.38
LMO4-202ENST00000370544 FLGP20930 4061 aaPredicted RBP6.35□□□□□ -1.39
LMO4-202ENST00000370544 MUC17Q685J3 4493 aa6.34□□□□□ -1.39
LMO4-202ENST00000370544 LCE3EQ5T5B0 92 aa6.33□□□□□ -1.4
LMO4-202ENST00000370544 KRTAP19-6Q3LI70 58 aa6.25□□□□□ -1.41
LMO4-202ENST00000370544 MT1MQ8N339 61 aa6.21□□□□□ -1.41
LMO4-202ENST00000370544 ABCA13Q86UQ4 5058 aa6.2□□□□□ -1.42
LMO4-202ENST00000370544 LCE2DQ5TA82 110 aaPredicted RBP6.19□□□□□ -1.42
LMO4-202ENST00000370544 EPPK1P58107 5090 aaKnown RBP6.19□□□□□ -1.42
LMO4-202ENST00000370544 KRTAP9-2Q9BYQ4 174 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 96.9 ms