RNA–Protein interactions for RNA: ENST00000366595.7

NID1-202, Transcript of nidogen 1, humanhuman

TSL 1 (best) BASIC

Gene NID1, Length 5,412 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NID1-202ENST00000366595 KRTAP19-4Q3LI73 84 aa6.62□□□□□ -1.35
NID1-202ENST00000366595 HUWE1Q7Z6Z7 4374 aaKnown RBP6.58□□□□□ -1.36
NID1-202ENST00000366595 KRTAP4-5Q9BYR2 181 aa6.52□□□□□ -1.37
NID1-202ENST00000366595 KRTAP10-7P60409 375 aaPredicted RBP6.47□□□□□ -1.37
NID1-202ENST00000366595 CSMD3Q7Z407 3707 aa6.47□□□□□ -1.37
NID1-202ENST00000366595 SPRR2GQ9BYE4 73 aa6.44□□□□□ -1.38
NID1-202ENST00000366595 LCE3CQ5T5A8 94 aa6.42□□□□□ -1.38
NID1-202ENST00000366595 KRTAP19-5Q3LI72 72 aa6.33□□□□□ -1.4
NID1-202ENST00000366595 ALMS1Q8TCU4 4167 aa6.3□□□□□ -1.4
NID1-202ENST00000366595 MT2AP02795 61 aa6.3□□□□□ -1.4
NID1-202ENST00000366595 MT1HP80294 61 aa6.28□□□□□ -1.4
NID1-202ENST00000366595 AKAP9Q99996 3911 aa6.27□□□□□ -1.41
NID1-202ENST00000366595 SPRR2FQ96RM1 72 aa6.24□□□□□ -1.41
NID1-202ENST00000366595 DNAH1Q9P2D7 4330 aa6.19□□□□□ -1.42
NID1-202ENST00000366595 DNAH10Q8IVF4 4471 aa6.19□□□□□ -1.42
NID1-202ENST00000366595 KRTAP4-1Q9BYQ7 146 aa6.17□□□□□ -1.42
NID1-202ENST00000366595 DNAH11Q96DT5 4516 aa6.17□□□□□ -1.42
NID1-202ENST00000366595 DNAH5Q8TE73 4624 aa6.16□□□□□ -1.42
NID1-202ENST00000366595 DNAH9Q9NYC9 4486 aa6.15□□□□□ -1.43
NID1-202ENST00000366595 ZNF469Q96JG9 3925 aaPredicted RBP6.1□□□□□ -1.43
NID1-202ENST00000366595 PLECQ15149 4684 aaKnown RBP6.1□□□□□ -1.43
NID1-202ENST00000366595 DNAH2Q9P225 4427 aa6.09□□□□□ -1.43
NID1-202ENST00000366595 MT1FP04733 61 aa6.09□□□□□ -1.43
NID1-202ENST00000366595 DNAH17Q9UFH2 4485 aa6.06□□□□□ -1.44
NID1-202ENST00000366595 DNAH8Q96JB1 4490 aa6.03□□□□□ -1.44
NID1-202ENST00000366595 KRTAP12-4P60329 112 aa6.01□□□□□ -1.45
NID1-202ENST00000366595 VPS13DQ5THJ4 4388 aa5.95□□□□□ -1.46
NID1-202ENST00000366595 FAT1Q14517 4588 aa5.95□□□□□ -1.46
NID1-202ENST00000366595 LCE3BQ5TA77 95 aa5.93□□□□□ -1.46
NID1-202ENST00000366595 KRTAP19-8Q3LI54 63 aa5.9□□□□□ -1.46
NID1-202ENST00000366595 DNAH3Q8TD57 4116 aa5.85□□□□□ -1.47
NID1-202ENST00000366595 SPRR5A0A1B0GTR4 108 aa5.83□□□□□ -1.48
NID1-202ENST00000366595 SACSQ9NZJ4 4579 aa5.83□□□□□ -1.48
NID1-202ENST00000366595 SPRR2EP22531 72 aa5.82□□□□□ -1.48
NID1-202ENST00000366595 SPRR2BP35325 72 aa5.82□□□□□ -1.48
NID1-202ENST00000366595 SPRR2AP35326 72 aa5.82□□□□□ -1.48
NID1-202ENST00000366595 LRP1BQ9NZR2 4599 aa5.81□□□□□ -1.48
NID1-202ENST00000366595 LCE3DQ9BYE3 92 aa5.81□□□□□ -1.48
NID1-202ENST00000366595 DYNC1H1Q14204 4646 aaKnown RBP5.8□□□□□ -1.48
NID1-202ENST00000366595 ANK2Q01484 3957 aa5.78□□□□□ -1.48
NID1-202ENST00000366595 LCE3EQ5T5B0 92 aa5.77□□□□□ -1.49
NID1-202ENST00000366595 STARD9Q9P2P6 4700 aa5.76□□□□□ -1.49
NID1-202ENST00000366595 MT1GP13640 62 aa5.74□□□□□ -1.49
NID1-202ENST00000366595 KRTAP19-1Q8IUB9 90 aa5.72□□□□□ -1.49
NID1-202ENST00000366595 DYNC2H1Q8NCM8 4307 aaKnown RBP5.71□□□□□ -1.5
NID1-202ENST00000366595 APOBP04114 4563 aaKnown RBP5.69□□□□□ -1.5
NID1-202ENST00000366595 MT1XP80297 61 aa5.68□□□□□ -1.5
NID1-202ENST00000366595 LCE2BO14633 110 aa5.68□□□□□ -1.5
NID1-202ENST00000366595 SPRR2DP22532 72 aa5.66□□□□□ -1.5
NID1-202ENST00000366595 VPS13BQ7Z7G8 4022 aa5.63□□□□□ -1.51
NID1-202ENST00000366595 FAT2Q9NYQ8 4349 aa5.63□□□□□ -1.51
NID1-202ENST00000366595 LRP1Q07954 4544 aaKnown RBP5.62□□□□□ -1.51
NID1-202ENST00000366595 FRAS1Q86XX4 4008 aa5.6□□□□□ -1.51
NID1-202ENST00000366595 FAT3Q8TDW7 4589 aa5.56□□□□□ -1.52
NID1-202ENST00000366595 RYR1P21817 5038 aa5.56□□□□□ -1.52
NID1-202ENST00000366595 KMT2AQ03164 3969 aa5.55□□□□□ -1.52
NID1-202ENST00000366595 MYCBP2O75592 4640 aa5.55□□□□□ -1.52
NID1-202ENST00000366595 MT1BP07438 61 aa5.53□□□□□ -1.52
NID1-202ENST00000366595 DNHD1Q96M86 4753 aa5.53□□□□□ -1.52
NID1-202ENST00000366595 LYSTQ99698 3801 aa5.45□□□□□ -1.54
NID1-202ENST00000366595 MT1LQ93083 61 aa5.42□□□□□ -1.54
NID1-202ENST00000366595 PRKDCP78527 4128 aaKnown RBP5.42□□□□□ -1.54
NID1-202ENST00000366595 CMYA5Q8N3K9 4069 aa5.42□□□□□ -1.54
NID1-202ENST00000366595 HECTD4Q9Y4D8 3996 aa5.4□□□□□ -1.55
NID1-202ENST00000366595 DNAH6Q9C0G6 4158 aa5.39□□□□□ -1.55
NID1-202ENST00000366595 KRTAP19-3Q7Z4W3 81 aa5.37□□□□□ -1.55
NID1-202ENST00000366595 KRTAP4-8A0A0G2JLE6 195 aa5.36□□□□□ -1.55
NID1-202ENST00000366595 KRTAP4-8Q9BYQ9 185 aa5.36□□□□□ -1.55
NID1-202ENST00000366595 HERC1Q15751 4861 aa5.35□□□□□ -1.55
NID1-202ENST00000366595 DNAH7Q8WXX0 4024 aa5.35□□□□□ -1.55
NID1-202ENST00000366595 KRTAP9-8Q9BYQ0 159 aa5.33□□□□□ -1.56
NID1-202ENST00000366595 MT3P25713 68 aa5.31□□□□□ -1.56
NID1-202ENST00000366595 LCE2CQ5TA81 110 aa5.3□□□□□ -1.56
NID1-202ENST00000366595 PRM1P04553 51 aa5.28□□□□□ -1.56
NID1-202ENST00000366595 KRTAP9-3Q9BYQ3 159 aa5.26□□□□□ -1.57
NID1-202ENST00000366595 RYR3Q15413 4870 aa5.25□□□□□ -1.57
NID1-202ENST00000366595 KRTAP17-1Q9BYP8 105 aa5.25□□□□□ -1.57
NID1-202ENST00000366595 LCE2DQ5TA82 110 aaPredicted RBP5.22□□□□□ -1.57
NID1-202ENST00000366595 MT1EP04732 61 aa5.2□□□□□ -1.58
NID1-202ENST00000366595 KIAA1109Q2LD37 5005 aa5.17□□□□□ -1.58
NID1-202ENST00000366595 HSPG2P98160 4391 aa5.15□□□□□ -1.59
NID1-202ENST00000366595 LRP2P98164 4655 aa5.13□□□□□ -1.59
NID1-202ENST00000366595 RYR2Q92736 4967 aa5.13□□□□□ -1.59
NID1-202ENST00000366595 KRTAP4-7Q9BYR0 210 aa5.1□□□□□ -1.59
NID1-202ENST00000366595 MT1MQ8N339 61 aa5.07□□□□□ -1.6
NID1-202ENST00000366595 LCE1BQ5T7P3 118 aa4.99□□□□□ -1.61
NID1-202ENST00000366595 PKD1P98161 4303 aa4.95□□□□□ -1.62
NID1-202ENST00000366595 LCE1DQ5T752 114 aa4.94□□□□□ -1.62
NID1-202ENST00000366595 HYDINQ4G0P3 5121 aa4.94□□□□□ -1.62
NID1-202ENST00000366595 MT4P47944 62 aa4.9□□□□□ -1.62
NID1-202ENST00000366595 LPAP08519 4548 aa4.9□□□□□ -1.63
NID1-202ENST00000366595 KRTAP19-2Q3LHN2 52 aa4.9□□□□□ -1.63
NID1-202ENST00000366595 PKHD1P08F94 4074 aa4.88□□□□□ -1.63
NID1-202ENST00000366595 MT1AP04731 61 aa4.88□□□□□ -1.63
NID1-202ENST00000366595 PKHD1L1Q86WI1 4243 aa4.87□□□□□ -1.63
NID1-202ENST00000366595 KMT2CQ8NEZ4 4911 aaKnown RBP4.85□□□□□ -1.63
NID1-202ENST00000366595 HERC2O95714 4834 aa4.85□□□□□ -1.63
NID1-202ENST00000366595 MUC17Q685J3 4493 aa4.82□□□□□ -1.64
NID1-202ENST00000366595 LOC100996750A0A140TA64 210 aa4.81□□□□□ -1.64
NID1-202ENST00000366595 KRTAP19-6Q3LI70 58 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms