RNA–Protein interactions for RNA: ENST00000361332.8

CTNND1-202, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 6,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-202ENST00000361332 LCE3AQ5TA76 89 aa3.6□□□□□ -1.83
CTNND1-202ENST00000361332 KRTAP10-7P60409 375 aaPredicted RBP3.57□□□□□ -1.84
CTNND1-202ENST00000361332 KRTAP10-4P60372 401 aaPredicted RBP3.56□□□□□ -1.84
CTNND1-202ENST00000361332 MT1HL1P0DM35 61 aa3.56□□□□□ -1.84
CTNND1-202ENST00000361332 CSMD3Q7Z407 3707 aa3.53□□□□□ -1.84
CTNND1-202ENST00000361332 CMYA5Q8N3K9 4069 aa3.5□□□□□ -1.85
CTNND1-202ENST00000361332 SPRR2FQ96RM1 72 aa3.47□□□□□ -1.85
CTNND1-202ENST00000361332 KRTAP4-5Q9BYR2 181 aa3.46□□□□□ -1.86
CTNND1-202ENST00000361332 DNAH9Q9NYC9 4486 aa3.42□□□□□ -1.86
CTNND1-202ENST00000361332 ANK2Q01484 3957 aa3.41□□□□□ -1.86
CTNND1-202ENST00000361332 DNAH1Q9P2D7 4330 aa3.4□□□□□ -1.86
CTNND1-202ENST00000361332 LYSTQ99698 3801 aa3.4□□□□□ -1.87
CTNND1-202ENST00000361332 DNAH5Q8TE73 4624 aa3.38□□□□□ -1.87
CTNND1-202ENST00000361332 PLECQ15149 4684 aaKnown RBP3.38□□□□□ -1.87
CTNND1-202ENST00000361332 ALMS1Q8TCU4 4167 aa3.37□□□□□ -1.87
CTNND1-202ENST00000361332 DNAH10Q8IVF4 4471 aa3.37□□□□□ -1.87
CTNND1-202ENST00000361332 DNAH11Q96DT5 4516 aa3.35□□□□□ -1.87
CTNND1-202ENST00000361332 DNAH17Q9UFH2 4485 aa3.33□□□□□ -1.88
CTNND1-202ENST00000361332 SPRR2EP22531 72 aa3.32□□□□□ -1.88
CTNND1-202ENST00000361332 SPRR2BP35325 72 aa3.32□□□□□ -1.88
CTNND1-202ENST00000361332 SPRR2AP35326 72 aa3.32□□□□□ -1.88
CTNND1-202ENST00000361332 VPS13DQ5THJ4 4388 aa3.3□□□□□ -1.88
CTNND1-202ENST00000361332 FRAS1Q86XX4 4008 aa3.28□□□□□ -1.88
CTNND1-202ENST00000361332 DNAH2Q9P225 4427 aa3.27□□□□□ -1.89
CTNND1-202ENST00000361332 DNAH8Q96JB1 4490 aa3.27□□□□□ -1.89
CTNND1-202ENST00000361332 KMT2AQ03164 3969 aa3.25□□□□□ -1.89
CTNND1-202ENST00000361332 SPRR2DP22532 72 aa3.23□□□□□ -1.89
CTNND1-202ENST00000361332 KRTAP4-1Q9BYQ7 146 aa3.23□□□□□ -1.89
CTNND1-202ENST00000361332 DNAH7Q8WXX0 4024 aa3.22□□□□□ -1.89
CTNND1-202ENST00000361332 STARD9Q9P2P6 4700 aa3.22□□□□□ -1.89
CTNND1-202ENST00000361332 DNAH3Q8TD57 4116 aa3.22□□□□□ -1.89
CTNND1-202ENST00000361332 DYNC1H1Q14204 4646 aaKnown RBP3.22□□□□□ -1.89
CTNND1-202ENST00000361332 LRP1BQ9NZR2 4599 aa3.21□□□□□ -1.9
CTNND1-202ENST00000361332 FAT1Q14517 4588 aa3.19□□□□□ -1.9
CTNND1-202ENST00000361332 SACSQ9NZJ4 4579 aa3.19□□□□□ -1.9
CTNND1-202ENST00000361332 KRTAP19-5Q3LI72 72 aa3.19□□□□□ -1.9
CTNND1-202ENST00000361332 MT1HP80294 61 aa3.18□□□□□ -1.9
CTNND1-202ENST00000361332 LCE3BQ5TA77 95 aa3.17□□□□□ -1.9
CTNND1-202ENST00000361332 PRKDCP78527 4128 aaKnown RBP3.17□□□□□ -1.9
CTNND1-202ENST00000361332 DNHD1Q96M86 4753 aa3.17□□□□□ -1.9
CTNND1-202ENST00000361332 DYNC2H1Q8NCM8 4307 aaKnown RBP3.15□□□□□ -1.91
CTNND1-202ENST00000361332 KRTAP12-4P60329 112 aa3.15□□□□□ -1.91
CTNND1-202ENST00000361332 LCE3CQ5T5A8 94 aa3.13□□□□□ -1.91
CTNND1-202ENST00000361332 LCE2BO14633 110 aa3.12□□□□□ -1.91
CTNND1-202ENST00000361332 MT2AP02795 61 aa3.1□□□□□ -1.91
CTNND1-202ENST00000361332 APOBP04114 4563 aaKnown RBP3.1□□□□□ -1.91
CTNND1-202ENST00000361332 FAT2Q9NYQ8 4349 aa3.1□□□□□ -1.91
CTNND1-202ENST00000361332 SPRR5A0A1B0GTR4 108 aa3.1□□□□□ -1.91
CTNND1-202ENST00000361332 SPRR2GQ9BYE4 73 aa3.1□□□□□ -1.91
CTNND1-202ENST00000361332 RYR1P21817 5038 aa3.09□□□□□ -1.91
CTNND1-202ENST00000361332 VPS13BQ7Z7G8 4022 aa3.08□□□□□ -1.92
CTNND1-202ENST00000361332 DNAH6Q9C0G6 4158 aa3.06□□□□□ -1.92
CTNND1-202ENST00000361332 MYCBP2O75592 4640 aa3.03□□□□□ -1.92
CTNND1-202ENST00000361332 LCE2CQ5TA81 110 aa3.02□□□□□ -1.93
CTNND1-202ENST00000361332 MT1FP04733 61 aa3.02□□□□□ -1.93
CTNND1-202ENST00000361332 MT1GP13640 62 aa3.01□□□□□ -1.93
CTNND1-202ENST00000361332 LCE2DQ5TA82 110 aaPredicted RBP3.01□□□□□ -1.93
CTNND1-202ENST00000361332 HECTD4Q9Y4D8 3996 aa3□□□□□ -1.93
CTNND1-202ENST00000361332 KRTAP17-1Q9BYP8 105 aa2.96□□□□□ -1.93
CTNND1-202ENST00000361332 KRTAP19-4Q3LI73 84 aa2.96□□□□□ -1.94
CTNND1-202ENST00000361332 FAT3Q8TDW7 4589 aa2.96□□□□□ -1.94
CTNND1-202ENST00000361332 RYR3Q15413 4870 aa2.94□□□□□ -1.94
CTNND1-202ENST00000361332 LRP1Q07954 4544 aaKnown RBP2.94□□□□□ -1.94
CTNND1-202ENST00000361332 KIAA1109Q2LD37 5005 aa2.94□□□□□ -1.94
CTNND1-202ENST00000361332 KRTAP19-1Q8IUB9 90 aa2.93□□□□□ -1.94
CTNND1-202ENST00000361332 LCE3EQ5T5B0 92 aa2.92□□□□□ -1.94
CTNND1-202ENST00000361332 LCE3DQ9BYE3 92 aa2.92□□□□□ -1.94
CTNND1-202ENST00000361332 HYDINQ4G0P3 5121 aa2.92□□□□□ -1.94
CTNND1-202ENST00000361332 MT4P47944 62 aa2.9□□□□□ -1.94
CTNND1-202ENST00000361332 RYR2Q92736 4967 aa2.89□□□□□ -1.95
CTNND1-202ENST00000361332 LPAP08519 4548 aa2.88□□□□□ -1.95
CTNND1-202ENST00000361332 KRTAP19-8Q3LI54 63 aa2.88□□□□□ -1.95
CTNND1-202ENST00000361332 PKHD1P08F94 4074 aa2.87□□□□□ -1.95
CTNND1-202ENST00000361332 LCE1BQ5T7P3 118 aa2.86□□□□□ -1.95
CTNND1-202ENST00000361332 MT1XP80297 61 aa2.84□□□□□ -1.95
CTNND1-202ENST00000361332 HSPG2P98160 4391 aa2.84□□□□□ -1.95
CTNND1-202ENST00000361332 LRP2P98164 4655 aa2.82□□□□□ -1.96
CTNND1-202ENST00000361332 MT1BP07438 61 aa2.8□□□□□ -1.96
CTNND1-202ENST00000361332 LCE1DQ5T752 114 aa2.8□□□□□ -1.96
CTNND1-202ENST00000361332 PKD1P98161 4303 aa2.78□□□□□ -1.96
CTNND1-202ENST00000361332 KRTAP9-8Q9BYQ0 159 aa2.76□□□□□ -1.97
CTNND1-202ENST00000361332 PKHD1L1Q86WI1 4243 aa2.74□□□□□ -1.97
CTNND1-202ENST00000361332 LCE5AQ5TCM9 118 aa2.73□□□□□ -1.97
CTNND1-202ENST00000361332 KRTAP4-8A0A0G2JLE6 195 aa2.73□□□□□ -1.97
CTNND1-202ENST00000361332 KRTAP4-8Q9BYQ9 185 aa2.73□□□□□ -1.97
CTNND1-202ENST00000361332 KMT2CQ8NEZ4 4911 aaKnown RBP2.72□□□□□ -1.97
CTNND1-202ENST00000361332 TNXBP22105 4242 aa2.72□□□□□ -1.97
CTNND1-202ENST00000361332 HERC2O95714 4834 aa2.71□□□□□ -1.98
CTNND1-202ENST00000361332 HERC1Q15751 4861 aa2.7□□□□□ -1.98
CTNND1-202ENST00000361332 KRTAP19-2Q3LHN2 52 aa2.69□□□□□ -1.98
CTNND1-202ENST00000361332 MT3P25713 68 aa2.69□□□□□ -1.98
CTNND1-202ENST00000361332 KRTAP9-3Q9BYQ3 159 aa2.68□□□□□ -1.98
CTNND1-202ENST00000361332 PRM1P04553 51 aa2.67□□□□□ -1.98
CTNND1-202ENST00000361332 KRTAP19-3Q7Z4W3 81 aa2.65□□□□□ -1.98
CTNND1-202ENST00000361332 MUC17Q685J3 4493 aa2.64□□□□□ -1.99
CTNND1-202ENST00000361332 LCE1CQ5T751 118 aa2.64□□□□□ -1.99
CTNND1-202ENST00000361332 LCE1EQ5T753 118 aa2.64□□□□□ -1.99
CTNND1-202ENST00000361332 LCE1FQ5T754 118 aa2.64□□□□□ -1.99
CTNND1-202ENST00000361332 LCE1AQ5T7P2 110 aa2.64□□□□□ -1.99
CTNND1-202ENST00000361332 PCLOQ9Y6V0 5065 aa2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms