RNA–Protein interactions for RNA: ENST00000360093.7

SCN3A-202, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN3A, Length 9,123 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-202ENST00000360093 CMYA5Q8N3K9 4069 aa2.2□□□□□ -2.06
SCN3A-202ENST00000360093 DNAH7Q8WXX0 4024 aa2.19□□□□□ -2.06
SCN3A-202ENST00000360093 CSMD3Q7Z407 3707 aa2.19□□□□□ -2.06
SCN3A-202ENST00000360093 KRTAP15-1Q3LI76 137 aa2.19□□□□□ -2.06
SCN3A-202ENST00000360093 KRTAP3-2Q9BYR7 98 aa2.19□□□□□ -2.06
SCN3A-202ENST00000360093 KRTAP23-1A1A580 65 aa2.18□□□□□ -2.06
SCN3A-202ENST00000360093 KRTAP4-5Q9BYR2 181 aa2.18□□□□□ -2.06
SCN3A-202ENST00000360093 KRTAP10-12P60413 245 aa2.15□□□□□ -2.06
SCN3A-202ENST00000360093 VPS13DQ5THJ4 4388 aa2.15□□□□□ -2.07
SCN3A-202ENST00000360093 DNAH6Q9C0G6 4158 aa2.15□□□□□ -2.07
SCN3A-202ENST00000360093 DYNC2H1Q8NCM8 4307 aaKnown RBP2.14□□□□□ -2.07
SCN3A-202ENST00000360093 PLECQ15149 4684 aaKnown RBP2.12□□□□□ -2.07
SCN3A-202ENST00000360093 DNAH2Q9P225 4427 aa2.12□□□□□ -2.07
SCN3A-202ENST00000360093 DNAH10Q8IVF4 4471 aa2.11□□□□□ -2.07
SCN3A-202ENST00000360093 FAT2Q9NYQ8 4349 aa2.11□□□□□ -2.07
SCN3A-202ENST00000360093 DNAH5Q8TE73 4624 aa2.11□□□□□ -2.07
SCN3A-202ENST00000360093 DNAH17Q9UFH2 4485 aa2.1□□□□□ -2.07
SCN3A-202ENST00000360093 KMT2AQ03164 3969 aa2.1□□□□□ -2.07
SCN3A-202ENST00000360093 PRKDCP78527 4128 aaKnown RBP2.09□□□□□ -2.07
SCN3A-202ENST00000360093 DNAH11Q96DT5 4516 aa2.09□□□□□ -2.07
SCN3A-202ENST00000360093 VPS13BQ7Z7G8 4022 aa2.09□□□□□ -2.08
SCN3A-202ENST00000360093 KRTAP12-3P60328 96 aa2.08□□□□□ -2.08
SCN3A-202ENST00000360093 INE1O15225 51 aa2.07□□□□□ -2.08
SCN3A-202ENST00000360093 STARD9Q9P2P6 4700 aa2.05□□□□□ -2.08
SCN3A-202ENST00000360093 LRP1BQ9NZR2 4599 aa2.04□□□□□ -2.08
SCN3A-202ENST00000360093 LCE3AQ5TA76 89 aa2.03□□□□□ -2.08
SCN3A-202ENST00000360093 FRAS1Q86XX4 4008 aa2.02□□□□□ -2.09
SCN3A-202ENST00000360093 MT1HP80294 61 aa2.02□□□□□ -2.09
SCN3A-202ENST00000360093 LORP23490 312 aaPredicted RBP2.01□□□□□ -2.09
SCN3A-202ENST00000360093 DNAH8Q96JB1 4490 aa2.01□□□□□ -2.09
SCN3A-202ENST00000360093 SPRR2GQ9BYE4 73 aa2.01□□□□□ -2.09
SCN3A-202ENST00000360093 KRTAP8-1Q8IUC2 63 aa2□□□□□ -2.09
SCN3A-202ENST00000360093 DYNC1H1Q14204 4646 aaKnown RBP2□□□□□ -2.09
SCN3A-202ENST00000360093 KRTAP4-1Q9BYQ7 146 aa2□□□□□ -2.09
SCN3A-202ENST00000360093 SACSQ9NZJ4 4579 aa1.99□□□□□ -2.09
SCN3A-202ENST00000360093 MT2AP02795 61 aa1.97□□□□□ -2.09
SCN3A-202ENST00000360093 KRTAP19-4Q3LI73 84 aa1.97□□□□□ -2.09
SCN3A-202ENST00000360093 CRCT1Q9UGL9 99 aa1.96□□□□□ -2.1
SCN3A-202ENST00000360093 PKHD1P08F94 4074 aa1.95□□□□□ -2.1
SCN3A-202ENST00000360093 DNHD1Q96M86 4753 aa1.95□□□□□ -2.1
SCN3A-202ENST00000360093 FAT1Q14517 4588 aa1.94□□□□□ -2.1
SCN3A-202ENST00000360093 PKD1P98161 4303 aa1.93□□□□□ -2.1
SCN3A-202ENST00000360093 PKHD1L1Q86WI1 4243 aa1.91□□□□□ -2.1
SCN3A-202ENST00000360093 MT1FP04733 61 aa1.91□□□□□ -2.1
SCN3A-202ENST00000360093 LCE2DQ5TA82 110 aaPredicted RBP1.9□□□□□ -2.11
SCN3A-202ENST00000360093 KRTAP10-7P60409 375 aaPredicted RBP1.89□□□□□ -2.11
SCN3A-202ENST00000360093 APOBP04114 4563 aaKnown RBP1.89□□□□□ -2.11
SCN3A-202ENST00000360093 FAT3Q8TDW7 4589 aa1.89□□□□□ -2.11
SCN3A-202ENST00000360093 KRTAP19-8Q3LI54 63 aa1.87□□□□□ -2.11
SCN3A-202ENST00000360093 HSPG2P98160 4391 aa1.86□□□□□ -2.11
SCN3A-202ENST00000360093 RYR1P21817 5038 aa1.85□□□□□ -2.11
SCN3A-202ENST00000360093 KRTAP10-5P60370 271 aa1.85□□□□□ -2.11
SCN3A-202ENST00000360093 KRTAP19-5Q3LI72 72 aa1.84□□□□□ -2.11
SCN3A-202ENST00000360093 LCE3CQ5T5A8 94 aa1.84□□□□□ -2.12
SCN3A-202ENST00000360093 SPRR2FQ96RM1 72 aa1.84□□□□□ -2.12
SCN3A-202ENST00000360093 KRTAP19-1Q8IUB9 90 aa1.83□□□□□ -2.12
SCN3A-202ENST00000360093 TNXBP22105 4242 aa1.82□□□□□ -2.12
SCN3A-202ENST00000360093 RYR3Q15413 4870 aa1.81□□□□□ -2.12
SCN3A-202ENST00000360093 LRP1Q07954 4544 aaKnown RBP1.81□□□□□ -2.12
SCN3A-202ENST00000360093 KRTAP9-8Q9BYQ0 159 aa1.79□□□□□ -2.12
SCN3A-202ENST00000360093 MYCBP2O75592 4640 aa1.79□□□□□ -2.12
SCN3A-202ENST00000360093 RYR2Q92736 4967 aa1.78□□□□□ -2.12
SCN3A-202ENST00000360093 FLGP20930 4061 aaPredicted RBP1.78□□□□□ -2.12
SCN3A-202ENST00000360093 MT1XP80297 61 aa1.77□□□□□ -2.13
SCN3A-202ENST00000360093 PCLOQ9Y6V0 5065 aa1.77□□□□□ -2.13
SCN3A-202ENST00000360093 LCE2CQ5TA81 110 aa1.76□□□□□ -2.13
SCN3A-202ENST00000360093 MT1BP07438 61 aa1.75□□□□□ -2.13
SCN3A-202ENST00000360093 HYDINQ4G0P3 5121 aa1.75□□□□□ -2.13
SCN3A-202ENST00000360093 KRTAP9-3Q9BYQ3 159 aa1.75□□□□□ -2.13
SCN3A-202ENST00000360093 SPRR2EP22531 72 aa1.74□□□□□ -2.13
SCN3A-202ENST00000360093 SPRR2BP35325 72 aa1.74□□□□□ -2.13
SCN3A-202ENST00000360093 SPRR2AP35326 72 aa1.74□□□□□ -2.13
SCN3A-202ENST00000360093 MT1GP13640 62 aa1.72□□□□□ -2.13
SCN3A-202ENST00000360093 LCE2BO14633 110 aa1.71□□□□□ -2.14
SCN3A-202ENST00000360093 UBR4Q5T4S7 5183 aa1.7□□□□□ -2.14
SCN3A-202ENST00000360093 MUC17Q685J3 4493 aa1.7□□□□□ -2.14
SCN3A-202ENST00000360093 SPRR2DP22532 72 aa1.7□□□□□ -2.14
SCN3A-202ENST00000360093 LRP2P98164 4655 aa1.7□□□□□ -2.14
SCN3A-202ENST00000360093 LPAP08519 4548 aa1.69□□□□□ -2.14
SCN3A-202ENST00000360093 HERC2O95714 4834 aa1.69□□□□□ -2.14
SCN3A-202ENST00000360093 KIAA1109Q2LD37 5005 aa1.69□□□□□ -2.14
SCN3A-202ENST00000360093 KRTAP12-4P60329 112 aa1.68□□□□□ -2.14
SCN3A-202ENST00000360093 KRTAP19-2Q3LHN2 52 aa1.68□□□□□ -2.14
SCN3A-202ENST00000360093 SPRR5A0A1B0GTR4 108 aa1.67□□□□□ -2.14
SCN3A-202ENST00000360093 EPPK1P58107 5090 aaKnown RBP1.66□□□□□ -2.14
SCN3A-202ENST00000360093 BIRC6Q9NR09 4857 aa1.66□□□□□ -2.14
SCN3A-202ENST00000360093 HERC1Q15751 4861 aa1.65□□□□□ -2.14
SCN3A-202ENST00000360093 KRTAP19-3Q7Z4W3 81 aa1.64□□□□□ -2.15
SCN3A-202ENST00000360093 KRTAP4-8A0A0G2JLE6 195 aa1.64□□□□□ -2.15
SCN3A-202ENST00000360093 KRTAP4-8Q9BYQ9 185 aa1.64□□□□□ -2.15
SCN3A-202ENST00000360093 MT1LQ93083 61 aa1.64□□□□□ -2.15
SCN3A-202ENST00000360093 KRTAP19-6Q3LI70 58 aa1.63□□□□□ -2.15
SCN3A-202ENST00000360093 LCE3BQ5TA77 95 aa1.63□□□□□ -2.15
SCN3A-202ENST00000360093 KMT2CQ8NEZ4 4911 aaKnown RBP1.62□□□□□ -2.15
SCN3A-202ENST00000360093 MT1EP04732 61 aa1.61□□□□□ -2.15
SCN3A-202ENST00000360093 LCE2AQ5TA79 106 aaPredicted RBP1.6□□□□□ -2.15
SCN3A-202ENST00000360093 ABCA13Q86UQ4 5058 aa1.6□□□□□ -2.15
SCN3A-202ENST00000360093 LCE3DQ9BYE3 92 aa1.58□□□□□ -2.16
SCN3A-202ENST00000360093 KRTAP9-2Q9BYQ4 174 aa1.57□□□□□ -2.16
SCN3A-202ENST00000360093 LCE3EQ5T5B0 92 aa1.56□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms