RNA–Protein interactions for RNA: ENST00000342494.7

UBE3B-202, Transcript of ubiquitin protein ligase E3B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE3B, Length 5,722 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-202ENST00000342494 ALMS1Q8TCU4 4167 aa6.28□□□□□ -1.4
UBE3B-202ENST00000342494 VPS13CQ709C8 3753 aa6.23□□□□□ -1.41
UBE3B-202ENST00000342494 KRTAP10-5P60370 271 aa6.16□□□□□ -1.42
UBE3B-202ENST00000342494 MT1HP80294 61 aa6.12□□□□□ -1.43
UBE3B-202ENST00000342494 DNAH5Q8TE73 4624 aa6.09□□□□□ -1.43
UBE3B-202ENST00000342494 KRTAP4-1Q9BYQ7 146 aa6.09□□□□□ -1.43
UBE3B-202ENST00000342494 PLECQ15149 4684 aaKnown RBP6.03□□□□□ -1.44
UBE3B-202ENST00000342494 MT2AP02795 61 aa6.02□□□□□ -1.45
UBE3B-202ENST00000342494 ZNF469Q96JG9 3925 aaPredicted RBP5.99□□□□□ -1.45
UBE3B-202ENST00000342494 DNAH9Q9NYC9 4486 aa5.97□□□□□ -1.45
UBE3B-202ENST00000342494 SPRR2FQ96RM1 72 aa5.94□□□□□ -1.46
UBE3B-202ENST00000342494 CSMD3Q7Z407 3707 aa5.93□□□□□ -1.46
UBE3B-202ENST00000342494 SPRR2GQ9BYE4 73 aa5.91□□□□□ -1.46
UBE3B-202ENST00000342494 DNAH11Q96DT5 4516 aa5.9□□□□□ -1.46
UBE3B-202ENST00000342494 DNAH1Q9P2D7 4330 aa5.9□□□□□ -1.46
UBE3B-202ENST00000342494 DNAH10Q8IVF4 4471 aa5.89□□□□□ -1.47
UBE3B-202ENST00000342494 KRTAP10-7P60409 375 aaPredicted RBP5.88□□□□□ -1.47
UBE3B-202ENST00000342494 MT1FP04733 61 aa5.87□□□□□ -1.47
UBE3B-202ENST00000342494 AKAP9Q99996 3911 aa5.87□□□□□ -1.47
UBE3B-202ENST00000342494 DNHD1Q96M86 4753 aa5.82□□□□□ -1.48
UBE3B-202ENST00000342494 FAT1Q14517 4588 aa5.82□□□□□ -1.48
UBE3B-202ENST00000342494 KRTAP19-5Q3LI72 72 aa5.76□□□□□ -1.49
UBE3B-202ENST00000342494 DNAH2Q9P225 4427 aa5.76□□□□□ -1.49
UBE3B-202ENST00000342494 RYR1P21817 5038 aa5.73□□□□□ -1.49
UBE3B-202ENST00000342494 DYNC1H1Q14204 4646 aaKnown RBP5.72□□□□□ -1.49
UBE3B-202ENST00000342494 LRP1BQ9NZR2 4599 aa5.64□□□□□ -1.51
UBE3B-202ENST00000342494 LCE3CQ5T5A8 94 aa5.63□□□□□ -1.51
UBE3B-202ENST00000342494 DNAH17Q9UFH2 4485 aa5.62□□□□□ -1.51
UBE3B-202ENST00000342494 VPS13DQ5THJ4 4388 aa5.61□□□□□ -1.51
UBE3B-202ENST00000342494 SACSQ9NZJ4 4579 aa5.61□□□□□ -1.51
UBE3B-202ENST00000342494 SPRR2EP22531 72 aa5.59□□□□□ -1.51
UBE3B-202ENST00000342494 SPRR2BP35325 72 aa5.59□□□□□ -1.51
UBE3B-202ENST00000342494 SPRR2AP35326 72 aa5.59□□□□□ -1.51
UBE3B-202ENST00000342494 FAT2Q9NYQ8 4349 aa5.55□□□□□ -1.52
UBE3B-202ENST00000342494 KRTAP19-4Q3LI73 84 aa5.55□□□□□ -1.52
UBE3B-202ENST00000342494 DNAH8Q96JB1 4490 aa5.53□□□□□ -1.52
UBE3B-202ENST00000342494 KRTAP19-8Q3LI54 63 aa5.47□□□□□ -1.53
UBE3B-202ENST00000342494 DYNC2H1Q8NCM8 4307 aaKnown RBP5.45□□□□□ -1.54
UBE3B-202ENST00000342494 STARD9Q9P2P6 4700 aa5.43□□□□□ -1.54
UBE3B-202ENST00000342494 APOBP04114 4563 aaKnown RBP5.43□□□□□ -1.54
UBE3B-202ENST00000342494 RYR3Q15413 4870 aa5.43□□□□□ -1.54
UBE3B-202ENST00000342494 KRTAP19-1Q8IUB9 90 aa5.43□□□□□ -1.54
UBE3B-202ENST00000342494 SPRR2DP22532 72 aa5.42□□□□□ -1.54
UBE3B-202ENST00000342494 LCE2BO14633 110 aa5.36□□□□□ -1.55
UBE3B-202ENST00000342494 KRTAP17-1Q9BYP8 105 aa5.34□□□□□ -1.55
UBE3B-202ENST00000342494 LCE3BQ5TA77 95 aa5.33□□□□□ -1.56
UBE3B-202ENST00000342494 VPS13BQ7Z7G8 4022 aa5.33□□□□□ -1.56
UBE3B-202ENST00000342494 MT1XP80297 61 aa5.32□□□□□ -1.56
UBE3B-202ENST00000342494 LRP1Q07954 4544 aaKnown RBP5.31□□□□□ -1.56
UBE3B-202ENST00000342494 DNAH3Q8TD57 4116 aa5.31□□□□□ -1.56
UBE3B-202ENST00000342494 KRTAP12-4P60329 112 aa5.3□□□□□ -1.56
UBE3B-202ENST00000342494 MT1GP13640 62 aa5.28□□□□□ -1.56
UBE3B-202ENST00000342494 KMT2AQ03164 3969 aa5.28□□□□□ -1.56
UBE3B-202ENST00000342494 PRKDCP78527 4128 aaKnown RBP5.28□□□□□ -1.56
UBE3B-202ENST00000342494 KIAA1109Q2LD37 5005 aa5.28□□□□□ -1.56
UBE3B-202ENST00000342494 FAT3Q8TDW7 4589 aa5.28□□□□□ -1.56
UBE3B-202ENST00000342494 MT1BP07438 61 aa5.28□□□□□ -1.56
UBE3B-202ENST00000342494 ANK2Q01484 3957 aa5.27□□□□□ -1.57
UBE3B-202ENST00000342494 KRTAP9-8Q9BYQ0 159 aa5.26□□□□□ -1.57
UBE3B-202ENST00000342494 KRTAP4-8A0A0G2JLE6 195 aa5.19□□□□□ -1.58
UBE3B-202ENST00000342494 KRTAP4-8Q9BYQ9 185 aa5.19□□□□□ -1.58
UBE3B-202ENST00000342494 CMYA5Q8N3K9 4069 aa5.19□□□□□ -1.58
UBE3B-202ENST00000342494 MYCBP2O75592 4640 aa5.18□□□□□ -1.58
UBE3B-202ENST00000342494 RYR2Q92736 4967 aa5.17□□□□□ -1.58
UBE3B-202ENST00000342494 HERC1Q15751 4861 aa5.16□□□□□ -1.58
UBE3B-202ENST00000342494 KRTAP9-3Q9BYQ3 159 aa5.16□□□□□ -1.58
UBE3B-202ENST00000342494 FRAS1Q86XX4 4008 aa5.16□□□□□ -1.58
UBE3B-202ENST00000342494 LYSTQ99698 3801 aa5.15□□□□□ -1.58
UBE3B-202ENST00000342494 LCE2CQ5TA81 110 aa5.1□□□□□ -1.59
UBE3B-202ENST00000342494 HERC2O95714 4834 aa5.06□□□□□ -1.6
UBE3B-202ENST00000342494 BIRC6Q9NR09 4857 aa5.05□□□□□ -1.6
UBE3B-202ENST00000342494 PCLOQ9Y6V0 5065 aa5.04□□□□□ -1.6
UBE3B-202ENST00000342494 DNAH6Q9C0G6 4158 aa5.03□□□□□ -1.6
UBE3B-202ENST00000342494 DNAH7Q8WXX0 4024 aa5.03□□□□□ -1.6
UBE3B-202ENST00000342494 PKD1P98161 4303 aa5.01□□□□□ -1.61
UBE3B-202ENST00000342494 LCE3DQ9BYE3 92 aa5.01□□□□□ -1.61
UBE3B-202ENST00000342494 KRTAP19-3Q7Z4W3 81 aa5□□□□□ -1.61
UBE3B-202ENST00000342494 HECTD4Q9Y4D8 3996 aa4.98□□□□□ -1.61
UBE3B-202ENST00000342494 LCE2DQ5TA82 110 aaPredicted RBP4.97□□□□□ -1.61
UBE3B-202ENST00000342494 HSPG2P98160 4391 aa4.96□□□□□ -1.62
UBE3B-202ENST00000342494 LCE3EQ5T5B0 92 aa4.91□□□□□ -1.62
UBE3B-202ENST00000342494 EPPK1P58107 5090 aaKnown RBP4.89□□□□□ -1.63
UBE3B-202ENST00000342494 PKHD1L1Q86WI1 4243 aa4.88□□□□□ -1.63
UBE3B-202ENST00000342494 MT1LQ93083 61 aa4.87□□□□□ -1.63
UBE3B-202ENST00000342494 LRP2P98164 4655 aa4.85□□□□□ -1.63
UBE3B-202ENST00000342494 MT1EP04732 61 aa4.84□□□□□ -1.64
UBE3B-202ENST00000342494 KRTAP9-2Q9BYQ4 174 aa4.83□□□□□ -1.64
UBE3B-202ENST00000342494 KRTAP4-7Q9BYR0 210 aa4.83□□□□□ -1.64
UBE3B-202ENST00000342494 HYDINQ4G0P3 5121 aa4.83□□□□□ -1.64
UBE3B-202ENST00000342494 MT4P47944 62 aa4.8□□□□□ -1.64
UBE3B-202ENST00000342494 SPRR5A0A1B0GTR4 108 aa4.79□□□□□ -1.64
UBE3B-202ENST00000342494 KRTAP19-2Q3LHN2 52 aa4.76□□□□□ -1.65
UBE3B-202ENST00000342494 PKHD1P08F94 4074 aa4.75□□□□□ -1.65
UBE3B-202ENST00000342494 KRTAP19-6Q3LI70 58 aa4.74□□□□□ -1.65
UBE3B-202ENST00000342494 MT3P25713 68 aa4.73□□□□□ -1.65
UBE3B-202ENST00000342494 MT1MQ8N339 61 aa4.72□□□□□ -1.65
UBE3B-202ENST00000342494 LPAP08519 4548 aa4.67□□□□□ -1.66
UBE3B-202ENST00000342494 KRTAP9-6A0A140TA67 174 aa4.62□□□□□ -1.67
UBE3B-202ENST00000342494 KMT2CQ8NEZ4 4911 aaKnown RBP4.62□□□□□ -1.67
UBE3B-202ENST00000342494 SYNE1Q8NF91 8797 aaKnown RBP4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms