RNA–Protein interactions for RNA: ENST00000324685.10

RNF40-201, Transcript of ring finger protein 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF40, Length 5,634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-201ENST00000324685 MT1HP80294 61 aa8.25□□□□□ -1.09
RNF40-201ENST00000324685 SPENQ96T58 3664 aaKnown RBP8.24□□□□□ -1.09
RNF40-201ENST00000324685 KRTAP4-1Q9BYQ7 146 aa8.21□□□□□ -1.09
RNF40-201ENST00000324685 SPRR2GQ9BYE4 73 aa8.21□□□□□ -1.09
RNF40-201ENST00000324685 DNAH2Q9P225 4427 aa8.21□□□□□ -1.1
RNF40-201ENST00000324685 MT2AP02795 61 aa8.16□□□□□ -1.1
RNF40-201ENST00000324685 KRTAP19-5Q3LI72 72 aa8.04□□□□□ -1.12
RNF40-201ENST00000324685 DNAH10Q8IVF4 4471 aa8.04□□□□□ -1.12
RNF40-201ENST00000324685 KRTAP10-7P60409 375 aaPredicted RBP8.04□□□□□ -1.12
RNF40-201ENST00000324685 BSNQ9UPA5 3926 aa8.04□□□□□ -1.12
RNF40-201ENST00000324685 LCE3CQ5T5A8 94 aa8.02□□□□□ -1.12
RNF40-201ENST00000324685 DNAH5Q8TE73 4624 aa8□□□□□ -1.13
RNF40-201ENST00000324685 KRTAP19-4Q3LI73 84 aa7.99□□□□□ -1.13
RNF40-201ENST00000324685 DNAH11Q96DT5 4516 aa7.98□□□□□ -1.13
RNF40-201ENST00000324685 MT1FP04733 61 aa7.95□□□□□ -1.14
RNF40-201ENST00000324685 DNAH9Q9NYC9 4486 aa7.95□□□□□ -1.14
RNF40-201ENST00000324685 DNAH1Q9P2D7 4330 aa7.94□□□□□ -1.14
RNF40-201ENST00000324685 SPRR2FQ96RM1 72 aa7.93□□□□□ -1.14
RNF40-201ENST00000324685 VPS13CQ709C8 3753 aa7.88□□□□□ -1.15
RNF40-201ENST00000324685 PLECQ15149 4684 aaKnown RBP7.79□□□□□ -1.16
RNF40-201ENST00000324685 DNAH17Q9UFH2 4485 aa7.73□□□□□ -1.17
RNF40-201ENST00000324685 CSMD3Q7Z407 3707 aa7.66□□□□□ -1.18
RNF40-201ENST00000324685 FAT1Q14517 4588 aa7.6□□□□□ -1.19
RNF40-201ENST00000324685 VPS13DQ5THJ4 4388 aa7.6□□□□□ -1.19
RNF40-201ENST00000324685 KRTAP19-8Q3LI54 63 aa7.57□□□□□ -1.2
RNF40-201ENST00000324685 DNAH8Q96JB1 4490 aa7.55□□□□□ -1.2
RNF40-201ENST00000324685 SACSQ9NZJ4 4579 aa7.54□□□□□ -1.2
RNF40-201ENST00000324685 DYNC1H1Q14204 4646 aaKnown RBP7.54□□□□□ -1.2
RNF40-201ENST00000324685 AKAP9Q99996 3911 aa7.51□□□□□ -1.21
RNF40-201ENST00000324685 DNAH3Q8TD57 4116 aa7.47□□□□□ -1.21
RNF40-201ENST00000324685 SPRR2EP22531 72 aa7.47□□□□□ -1.21
RNF40-201ENST00000324685 SPRR2BP35325 72 aa7.47□□□□□ -1.21
RNF40-201ENST00000324685 SPRR2AP35326 72 aa7.47□□□□□ -1.21
RNF40-201ENST00000324685 FAT2Q9NYQ8 4349 aa7.46□□□□□ -1.21
RNF40-201ENST00000324685 ZNF469Q96JG9 3925 aaPredicted RBP7.46□□□□□ -1.22
RNF40-201ENST00000324685 DYNC2H1Q8NCM8 4307 aaKnown RBP7.44□□□□□ -1.22
RNF40-201ENST00000324685 LCE3BQ5TA77 95 aa7.43□□□□□ -1.22
RNF40-201ENST00000324685 LRP1BQ9NZR2 4599 aa7.43□□□□□ -1.22
RNF40-201ENST00000324685 KRTAP19-1Q8IUB9 90 aa7.43□□□□□ -1.22
RNF40-201ENST00000324685 MT1XP80297 61 aa7.36□□□□□ -1.23
RNF40-201ENST00000324685 KRTAP12-4P60329 112 aa7.33□□□□□ -1.24
RNF40-201ENST00000324685 MT1GP13640 62 aa7.3□□□□□ -1.24
RNF40-201ENST00000324685 SPRR2DP22532 72 aa7.24□□□□□ -1.25
RNF40-201ENST00000324685 LRP1Q07954 4544 aaKnown RBP7.23□□□□□ -1.25
RNF40-201ENST00000324685 APOBP04114 4563 aaKnown RBP7.23□□□□□ -1.25
RNF40-201ENST00000324685 DNHD1Q96M86 4753 aa7.22□□□□□ -1.25
RNF40-201ENST00000324685 MT1BP07438 61 aa7.21□□□□□ -1.25
RNF40-201ENST00000324685 LCE2BO14633 110 aa7.21□□□□□ -1.26
RNF40-201ENST00000324685 SPRR5A0A1B0GTR4 108 aa7.2□□□□□ -1.26
RNF40-201ENST00000324685 RYR1P21817 5038 aa7.2□□□□□ -1.26
RNF40-201ENST00000324685 CMYA5Q8N3K9 4069 aa7.18□□□□□ -1.26
RNF40-201ENST00000324685 HERC1Q15751 4861 aa7.14□□□□□ -1.27
RNF40-201ENST00000324685 STARD9Q9P2P6 4700 aa7.14□□□□□ -1.27
RNF40-201ENST00000324685 LCE3DQ9BYE3 92 aa7.11□□□□□ -1.27
RNF40-201ENST00000324685 ANK2Q01484 3957 aa7.08□□□□□ -1.28
RNF40-201ENST00000324685 KRTAP9-8Q9BYQ0 159 aa7.07□□□□□ -1.28
RNF40-201ENST00000324685 FAT3Q8TDW7 4589 aa7.06□□□□□ -1.28
RNF40-201ENST00000324685 DNAH6Q9C0G6 4158 aa7.04□□□□□ -1.28
RNF40-201ENST00000324685 LCE3EQ5T5B0 92 aa7.02□□□□□ -1.29
RNF40-201ENST00000324685 DNAH7Q8WXX0 4024 aa7.02□□□□□ -1.29
RNF40-201ENST00000324685 PRKDCP78527 4128 aaKnown RBP7.01□□□□□ -1.29
RNF40-201ENST00000324685 KRTAP4-8A0A0G2JLE6 195 aa7.01□□□□□ -1.29
RNF40-201ENST00000324685 KRTAP4-8Q9BYQ9 185 aa7.01□□□□□ -1.29
RNF40-201ENST00000324685 HSPG2P98160 4391 aa6.98□□□□□ -1.29
RNF40-201ENST00000324685 RYR3Q15413 4870 aa6.96□□□□□ -1.3
RNF40-201ENST00000324685 KRTAP9-3Q9BYQ3 159 aa6.96□□□□□ -1.3
RNF40-201ENST00000324685 VPS13BQ7Z7G8 4022 aa6.94□□□□□ -1.3
RNF40-201ENST00000324685 KRTAP17-1Q9BYP8 105 aa6.91□□□□□ -1.3
RNF40-201ENST00000324685 KMT2AQ03164 3969 aa6.85□□□□□ -1.31
RNF40-201ENST00000324685 KRTAP19-3Q7Z4W3 81 aa6.84□□□□□ -1.31
RNF40-201ENST00000324685 LCE2CQ5TA81 110 aa6.82□□□□□ -1.32
RNF40-201ENST00000324685 MT1LQ93083 61 aa6.79□□□□□ -1.32
RNF40-201ENST00000324685 RYR2Q92736 4967 aa6.74□□□□□ -1.33
RNF40-201ENST00000324685 MYCBP2O75592 4640 aa6.71□□□□□ -1.33
RNF40-201ENST00000324685 LYSTQ99698 3801 aa6.7□□□□□ -1.34
RNF40-201ENST00000324685 MT1EP04732 61 aa6.68□□□□□ -1.34
RNF40-201ENST00000324685 KRTAP4-7Q9BYR0 210 aa6.65□□□□□ -1.35
RNF40-201ENST00000324685 PKD1P98161 4303 aa6.64□□□□□ -1.35
RNF40-201ENST00000324685 FRAS1Q86XX4 4008 aa6.62□□□□□ -1.35
RNF40-201ENST00000324685 LCE2DQ5TA82 110 aaPredicted RBP6.61□□□□□ -1.35
RNF40-201ENST00000324685 MT3P25713 68 aa6.56□□□□□ -1.36
RNF40-201ENST00000324685 PKHD1L1Q86WI1 4243 aa6.52□□□□□ -1.36
RNF40-201ENST00000324685 MT1MQ8N339 61 aa6.5□□□□□ -1.37
RNF40-201ENST00000324685 KIAA1109Q2LD37 5005 aa6.49□□□□□ -1.37
RNF40-201ENST00000324685 PRM1P04553 51 aa6.48□□□□□ -1.37
RNF40-201ENST00000324685 HECTD4Q9Y4D8 3996 aa6.46□□□□□ -1.38
RNF40-201ENST00000324685 KRTAP19-2Q3LHN2 52 aa6.39□□□□□ -1.39
RNF40-201ENST00000324685 MT4P47944 62 aa6.34□□□□□ -1.4
RNF40-201ENST00000324685 KRTAP19-6Q3LI70 58 aa6.32□□□□□ -1.4
RNF40-201ENST00000324685 LOC100996750A0A140TA64 210 aa6.3□□□□□ -1.4
RNF40-201ENST00000324685 HERC2O95714 4834 aa6.28□□□□□ -1.4
RNF40-201ENST00000324685 LCE1BQ5T7P3 118 aa6.22□□□□□ -1.41
RNF40-201ENST00000324685 BIRC6Q9NR09 4857 aa6.2□□□□□ -1.42
RNF40-201ENST00000324685 LCE1DQ5T752 114 aa6.18□□□□□ -1.42
RNF40-201ENST00000324685 KRTAP4-3Q9BYR4 195 aa6.18□□□□□ -1.42
RNF40-201ENST00000324685 HYDINQ4G0P3 5121 aa6.17□□□□□ -1.42
RNF40-201ENST00000324685 PCLOQ9Y6V0 5065 aa6.16□□□□□ -1.42
RNF40-201ENST00000324685 LRP2P98164 4655 aa6.14□□□□□ -1.43
RNF40-201ENST00000324685 MT1AP04731 61 aa6.13□□□□□ -1.43
RNF40-201ENST00000324685 MUC17Q685J3 4493 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms