RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 KMT2AQ03164 3969 aa5.97□□□□□ -1.45
RFFL-201ENST00000315249 PRKDCP78527 4128 aaKnown RBP5.94□□□□□ -1.46
RFFL-201ENST00000315249 KRTAP3-2Q9BYR7 98 aa5.89□□□□□ -1.47
RFFL-201ENST00000315249 PLECQ15149 4684 aaKnown RBP5.87□□□□□ -1.47
RFFL-201ENST00000315249 DNAH10Q8IVF4 4471 aa5.86□□□□□ -1.47
RFFL-201ENST00000315249 DNAH5Q8TE73 4624 aa5.85□□□□□ -1.47
RFFL-201ENST00000315249 LORP23490 312 aaPredicted RBP5.85□□□□□ -1.47
RFFL-201ENST00000315249 DNAH3Q8TD57 4116 aa5.83□□□□□ -1.48
RFFL-201ENST00000315249 DNAH2Q9P225 4427 aa5.83□□□□□ -1.48
RFFL-201ENST00000315249 LYSTQ99698 3801 aa5.82□□□□□ -1.48
RFFL-201ENST00000315249 VPS13BQ7Z7G8 4022 aa5.82□□□□□ -1.48
RFFL-201ENST00000315249 FAT2Q9NYQ8 4349 aa5.82□□□□□ -1.48
RFFL-201ENST00000315249 DNAH11Q96DT5 4516 aa5.79□□□□□ -1.48
RFFL-201ENST00000315249 ANK2Q01484 3957 aa5.78□□□□□ -1.48
RFFL-201ENST00000315249 KRTAP8-1Q8IUC2 63 aa5.78□□□□□ -1.48
RFFL-201ENST00000315249 CMYA5Q8N3K9 4069 aa5.78□□□□□ -1.48
RFFL-201ENST00000315249 VPS13DQ5THJ4 4388 aa5.76□□□□□ -1.49
RFFL-201ENST00000315249 KRTAP12-3P60328 96 aa5.76□□□□□ -1.49
RFFL-201ENST00000315249 DNHD1Q96M86 4753 aa5.75□□□□□ -1.49
RFFL-201ENST00000315249 KRTAP4-1Q9BYQ7 146 aa5.74□□□□□ -1.49
RFFL-201ENST00000315249 STARD9Q9P2P6 4700 aa5.74□□□□□ -1.49
RFFL-201ENST00000315249 MT1HP80294 61 aa5.72□□□□□ -1.49
RFFL-201ENST00000315249 LCE3AQ5TA76 89 aa5.72□□□□□ -1.49
RFFL-201ENST00000315249 LRP1BQ9NZR2 4599 aa5.7□□□□□ -1.5
RFFL-201ENST00000315249 FRAS1Q86XX4 4008 aa5.7□□□□□ -1.5
RFFL-201ENST00000315249 DYNC2H1Q8NCM8 4307 aaKnown RBP5.67□□□□□ -1.5
RFFL-201ENST00000315249 DNAH17Q9UFH2 4485 aa5.64□□□□□ -1.51
RFFL-201ENST00000315249 FAT1Q14517 4588 aa5.6□□□□□ -1.51
RFFL-201ENST00000315249 DNAH7Q8WXX0 4024 aa5.6□□□□□ -1.51
RFFL-201ENST00000315249 DNAH6Q9C0G6 4158 aa5.58□□□□□ -1.52
RFFL-201ENST00000315249 MT2AP02795 61 aa5.54□□□□□ -1.52
RFFL-201ENST00000315249 DYNC1H1Q14204 4646 aaKnown RBP5.48□□□□□ -1.53
RFFL-201ENST00000315249 DNAH8Q96JB1 4490 aa5.46□□□□□ -1.54
RFFL-201ENST00000315249 SPRR2FQ96RM1 72 aa5.46□□□□□ -1.54
RFFL-201ENST00000315249 MT1FP04733 61 aa5.44□□□□□ -1.54
RFFL-201ENST00000315249 HECTD4Q9Y4D8 3996 aa5.44□□□□□ -1.54
RFFL-201ENST00000315249 SACSQ9NZJ4 4579 aa5.42□□□□□ -1.54
RFFL-201ENST00000315249 KRTAP23-1A1A580 65 aa5.42□□□□□ -1.54
RFFL-201ENST00000315249 KRTAP10-5P60370 271 aa5.4□□□□□ -1.54
RFFL-201ENST00000315249 RYR1P21817 5038 aa5.38□□□□□ -1.55
RFFL-201ENST00000315249 SPRR2GQ9BYE4 73 aa5.38□□□□□ -1.55
RFFL-201ENST00000315249 KRTAP17-1Q9BYP8 105 aa5.36□□□□□ -1.55
RFFL-201ENST00000315249 FAT3Q8TDW7 4589 aa5.3□□□□□ -1.56
RFFL-201ENST00000315249 KRTAP10-7P60409 375 aaPredicted RBP5.29□□□□□ -1.56
RFFL-201ENST00000315249 PKHD1P08F94 4074 aa5.28□□□□□ -1.56
RFFL-201ENST00000315249 INE1O15225 51 aa5.27□□□□□ -1.57
RFFL-201ENST00000315249 APOBP04114 4563 aaKnown RBP5.23□□□□□ -1.57
RFFL-201ENST00000315249 MYCBP2O75592 4640 aa5.23□□□□□ -1.57
RFFL-201ENST00000315249 KRTAP19-5Q3LI72 72 aa5.22□□□□□ -1.57
RFFL-201ENST00000315249 HSPG2P98160 4391 aa5.22□□□□□ -1.57
RFFL-201ENST00000315249 LRP1Q07954 4544 aaKnown RBP5.21□□□□□ -1.58
RFFL-201ENST00000315249 SPRR2EP22531 72 aa5.19□□□□□ -1.58
RFFL-201ENST00000315249 SPRR2BP35325 72 aa5.19□□□□□ -1.58
RFFL-201ENST00000315249 SPRR2AP35326 72 aa5.19□□□□□ -1.58
RFFL-201ENST00000315249 RYR3Q15413 4870 aa5.13□□□□□ -1.59
RFFL-201ENST00000315249 PKHD1L1Q86WI1 4243 aa5.07□□□□□ -1.6
RFFL-201ENST00000315249 LPAP08519 4548 aa5.04□□□□□ -1.6
RFFL-201ENST00000315249 KRTAP19-1Q8IUB9 90 aa5.01□□□□□ -1.61
RFFL-201ENST00000315249 SPRR2DP22532 72 aa5□□□□□ -1.61
RFFL-201ENST00000315249 LCE3CQ5T5A8 94 aa5□□□□□ -1.61
RFFL-201ENST00000315249 KRTAP9-8Q9BYQ0 159 aa4.97□□□□□ -1.61
RFFL-201ENST00000315249 KRTAP19-8Q3LI54 63 aa4.97□□□□□ -1.61
RFFL-201ENST00000315249 LCE2BO14633 110 aa4.94□□□□□ -1.62
RFFL-201ENST00000315249 PKD1P98161 4303 aa4.91□□□□□ -1.62
RFFL-201ENST00000315249 MT1XP80297 61 aa4.89□□□□□ -1.63
RFFL-201ENST00000315249 HYDINQ4G0P3 5121 aa4.89□□□□□ -1.63
RFFL-201ENST00000315249 LRP2P98164 4655 aa4.89□□□□□ -1.63
RFFL-201ENST00000315249 KIAA1109Q2LD37 5005 aa4.89□□□□□ -1.63
RFFL-201ENST00000315249 TNXBP22105 4242 aa4.87□□□□□ -1.63
RFFL-201ENST00000315249 LCE2CQ5TA81 110 aa4.87□□□□□ -1.63
RFFL-201ENST00000315249 MT1BP07438 61 aa4.86□□□□□ -1.63
RFFL-201ENST00000315249 KRTAP4-8A0A0G2JLE6 195 aa4.85□□□□□ -1.63
RFFL-201ENST00000315249 KRTAP4-8Q9BYQ9 185 aa4.85□□□□□ -1.63
RFFL-201ENST00000315249 KRTAP9-3Q9BYQ3 159 aa4.84□□□□□ -1.63
RFFL-201ENST00000315249 HERC2O95714 4834 aa4.81□□□□□ -1.64
RFFL-201ENST00000315249 LCE3BQ5TA77 95 aa4.8□□□□□ -1.64
RFFL-201ENST00000315249 MT1GP13640 62 aa4.8□□□□□ -1.64
RFFL-201ENST00000315249 KRTAP9-2Q9BYQ4 174 aa4.77□□□□□ -1.65
RFFL-201ENST00000315249 KRTAP12-4P60329 112 aa4.76□□□□□ -1.65
RFFL-201ENST00000315249 RYR2Q92736 4967 aa4.74□□□□□ -1.65
RFFL-201ENST00000315249 KRTAP19-4Q3LI73 84 aa4.73□□□□□ -1.65
RFFL-201ENST00000315249 FLGP20930 4061 aaPredicted RBP4.71□□□□□ -1.66
RFFL-201ENST00000315249 KMT2CQ8NEZ4 4911 aaKnown RBP4.61□□□□□ -1.67
RFFL-201ENST00000315249 BIRC6Q9NR09 4857 aa4.61□□□□□ -1.67
RFFL-201ENST00000315249 LCE2DQ5TA82 110 aaPredicted RBP4.58□□□□□ -1.68
RFFL-201ENST00000315249 PCLOQ9Y6V0 5065 aa4.56□□□□□ -1.68
RFFL-201ENST00000315249 KRTAP19-2Q3LHN2 52 aa4.56□□□□□ -1.68
RFFL-201ENST00000315249 KRTAP19-3Q7Z4W3 81 aa4.54□□□□□ -1.68
RFFL-201ENST00000315249 KRTAP9-6A0A140TA67 174 aa4.53□□□□□ -1.68
RFFL-201ENST00000315249 MT4P47944 62 aa4.51□□□□□ -1.69
RFFL-201ENST00000315249 HERC1Q15751 4861 aa4.49□□□□□ -1.69
RFFL-201ENST00000315249 KRTAP4-7Q9BYR0 210 aa4.46□□□□□ -1.69
RFFL-201ENST00000315249 KRTAP19-6Q3LI70 58 aa4.44□□□□□ -1.7
RFFL-201ENST00000315249 MT1EP04732 61 aa4.41□□□□□ -1.7
RFFL-201ENST00000315249 MT1LQ93083 61 aa4.41□□□□□ -1.7
RFFL-201ENST00000315249 LCE2AQ5TA79 106 aaPredicted RBP4.37□□□□□ -1.71
RFFL-201ENST00000315249 LCE3DQ9BYE3 92 aa4.37□□□□□ -1.71
RFFL-201ENST00000315249 MUC17Q685J3 4493 aa4.35□□□□□ -1.71
RFFL-201ENST00000315249 FSIP2Q5CZC0 6907 aa4.34□□□□□ -1.71
RFFL-201ENST00000315249 MT1MQ8N339 61 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms