RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 MT1HL1P0DM35 61 aa3.48□□□□□ -1.85
LIMD1-201ENST00000273317 KRTAP10-5P60370 271 aa3.48□□□□□ -1.85
LIMD1-201ENST00000273317 HECTD4Q9Y4D8 3996 aa3.45□□□□□ -1.86
LIMD1-201ENST00000273317 DNAH7Q8WXX0 4024 aa3.44□□□□□ -1.86
LIMD1-201ENST00000273317 DNAH3Q8TD57 4116 aa3.44□□□□□ -1.86
LIMD1-201ENST00000273317 LCE3AQ5TA76 89 aa3.39□□□□□ -1.87
LIMD1-201ENST00000273317 KRTAP10-4P60372 401 aaPredicted RBP3.38□□□□□ -1.87
LIMD1-201ENST00000273317 HUWE1Q7Z6Z7 4374 aaKnown RBP3.38□□□□□ -1.87
LIMD1-201ENST00000273317 KRTAP4-5Q9BYR2 181 aa3.36□□□□□ -1.87
LIMD1-201ENST00000273317 KMT2AQ03164 3969 aa3.36□□□□□ -1.87
LIMD1-201ENST00000273317 ANK3Q12955 4377 aaKnown RBP3.27□□□□□ -1.89
LIMD1-201ENST00000273317 KRTAP8-1Q8IUC2 63 aa3.27□□□□□ -1.89
LIMD1-201ENST00000273317 KRTAP19-4Q3LI73 84 aa3.23□□□□□ -1.89
LIMD1-201ENST00000273317 DNAH1Q9P2D7 4330 aa3.22□□□□□ -1.89
LIMD1-201ENST00000273317 FRAS1Q86XX4 4008 aa3.2□□□□□ -1.9
LIMD1-201ENST00000273317 LORP23490 312 aaPredicted RBP3.19□□□□□ -1.9
LIMD1-201ENST00000273317 VPS13BQ7Z7G8 4022 aa3.18□□□□□ -1.9
LIMD1-201ENST00000273317 DNAH6Q9C0G6 4158 aa3.16□□□□□ -1.9
LIMD1-201ENST00000273317 FLGP20930 4061 aaPredicted RBP3.16□□□□□ -1.9
LIMD1-201ENST00000273317 SPRR2GQ9BYE4 73 aa3.14□□□□□ -1.91
LIMD1-201ENST00000273317 DNAH2Q9P225 4427 aa3.12□□□□□ -1.91
LIMD1-201ENST00000273317 LCE3CQ5T5A8 94 aa3.08□□□□□ -1.92
LIMD1-201ENST00000273317 KRTAP10-7P60409 375 aaPredicted RBP3.08□□□□□ -1.92
LIMD1-201ENST00000273317 DNAH10Q8IVF4 4471 aa3.07□□□□□ -1.92
LIMD1-201ENST00000273317 MT1HP80294 61 aa3.05□□□□□ -1.92
LIMD1-201ENST00000273317 KRTAP19-5Q3LI72 72 aa3.04□□□□□ -1.92
LIMD1-201ENST00000273317 MT2AP02795 61 aa3.03□□□□□ -1.92
LIMD1-201ENST00000273317 KRTAP4-1Q9BYQ7 146 aa3□□□□□ -1.93
LIMD1-201ENST00000273317 DNAH9Q9NYC9 4486 aa2.99□□□□□ -1.93
LIMD1-201ENST00000273317 PRKDCP78527 4128 aaKnown RBP2.99□□□□□ -1.93
LIMD1-201ENST00000273317 LCE3BQ5TA77 95 aa2.97□□□□□ -1.93
LIMD1-201ENST00000273317 SPRR2FQ96RM1 72 aa2.96□□□□□ -1.93
LIMD1-201ENST00000273317 MT1FP04733 61 aa2.95□□□□□ -1.94
LIMD1-201ENST00000273317 STARD9Q9P2P6 4700 aa2.94□□□□□ -1.94
LIMD1-201ENST00000273317 PLECQ15149 4684 aaKnown RBP2.9□□□□□ -1.95
LIMD1-201ENST00000273317 PKHD1P08F94 4074 aa2.89□□□□□ -1.95
LIMD1-201ENST00000273317 DNAH11Q96DT5 4516 aa2.88□□□□□ -1.95
LIMD1-201ENST00000273317 KRTAP17-1Q9BYP8 105 aa2.88□□□□□ -1.95
LIMD1-201ENST00000273317 VPS13DQ5THJ4 4388 aa2.87□□□□□ -1.95
LIMD1-201ENST00000273317 KRTAP19-8Q3LI54 63 aa2.87□□□□□ -1.95
LIMD1-201ENST00000273317 FAT2Q9NYQ8 4349 aa2.81□□□□□ -1.96
LIMD1-201ENST00000273317 DYNC1H1Q14204 4646 aaKnown RBP2.81□□□□□ -1.96
LIMD1-201ENST00000273317 DYNC2H1Q8NCM8 4307 aaKnown RBP2.8□□□□□ -1.96
LIMD1-201ENST00000273317 SPRR5A0A1B0GTR4 108 aa2.8□□□□□ -1.96
LIMD1-201ENST00000273317 LRP1Q07954 4544 aaKnown RBP2.8□□□□□ -1.96
LIMD1-201ENST00000273317 KRTAP12-4P60329 112 aa2.79□□□□□ -1.96
LIMD1-201ENST00000273317 SPRR2EP22531 72 aa2.79□□□□□ -1.96
LIMD1-201ENST00000273317 SPRR2BP35325 72 aa2.79□□□□□ -1.96
LIMD1-201ENST00000273317 SPRR2AP35326 72 aa2.79□□□□□ -1.96
LIMD1-201ENST00000273317 MT1XP80297 61 aa2.78□□□□□ -1.96
LIMD1-201ENST00000273317 MT1GP13640 62 aa2.77□□□□□ -1.97
LIMD1-201ENST00000273317 DNAH17Q9UFH2 4485 aa2.77□□□□□ -1.97
LIMD1-201ENST00000273317 DNAH8Q96JB1 4490 aa2.76□□□□□ -1.97
LIMD1-201ENST00000273317 KRTAP19-1Q8IUB9 90 aa2.75□□□□□ -1.97
LIMD1-201ENST00000273317 LCE2BO14633 110 aa2.73□□□□□ -1.97
LIMD1-201ENST00000273317 SPRR2DP22532 72 aa2.72□□□□□ -1.97
LIMD1-201ENST00000273317 DNAH5Q8TE73 4624 aa2.72□□□□□ -1.97
LIMD1-201ENST00000273317 DNHD1Q96M86 4753 aa2.72□□□□□ -1.97
LIMD1-201ENST00000273317 PKHD1L1Q86WI1 4243 aa2.71□□□□□ -1.98
LIMD1-201ENST00000273317 LCE3DQ9BYE3 92 aa2.69□□□□□ -1.98
LIMD1-201ENST00000273317 PKD1P98161 4303 aa2.69□□□□□ -1.98
LIMD1-201ENST00000273317 LRP1BQ9NZR2 4599 aa2.68□□□□□ -1.98
LIMD1-201ENST00000273317 LCE3EQ5T5B0 92 aa2.67□□□□□ -1.98
LIMD1-201ENST00000273317 MT1BP07438 61 aa2.66□□□□□ -1.98
LIMD1-201ENST00000273317 FAT1Q14517 4588 aa2.65□□□□□ -1.99
LIMD1-201ENST00000273317 MYCBP2O75592 4640 aa2.63□□□□□ -1.99
LIMD1-201ENST00000273317 FAT3Q8TDW7 4589 aa2.61□□□□□ -1.99
LIMD1-201ENST00000273317 KRTAP9-8Q9BYQ0 159 aa2.6□□□□□ -1.99
LIMD1-201ENST00000273317 PRM1P04553 51 aa2.6□□□□□ -1.99
LIMD1-201ENST00000273317 MT1LQ93083 61 aa2.6□□□□□ -1.99
LIMD1-201ENST00000273317 KRTAP9-3Q9BYQ3 159 aa2.6□□□□□ -1.99
LIMD1-201ENST00000273317 KRTAP19-3Q7Z4W3 81 aa2.59□□□□□ -1.99
LIMD1-201ENST00000273317 HYDINQ4G0P3 5121 aa2.56□□□□□ -2
LIMD1-201ENST00000273317 KRTAP4-7Q9BYR0 210 aa2.55□□□□□ -2
LIMD1-201ENST00000273317 RYR1P21817 5038 aa2.54□□□□□ -2
LIMD1-201ENST00000273317 HSPG2P98160 4391 aa2.54□□□□□ -2
LIMD1-201ENST00000273317 SACSQ9NZJ4 4579 aa2.54□□□□□ -2
LIMD1-201ENST00000273317 APOBP04114 4563 aaKnown RBP2.54□□□□□ -2
LIMD1-201ENST00000273317 KRTAP4-8A0A0G2JLE6 195 aa2.53□□□□□ -2
LIMD1-201ENST00000273317 KRTAP4-8Q9BYQ9 185 aa2.53□□□□□ -2
LIMD1-201ENST00000273317 RYR3Q15413 4870 aa2.53□□□□□ -2
LIMD1-201ENST00000273317 MT1EP04732 61 aa2.53□□□□□ -2.01
LIMD1-201ENST00000273317 LCE2CQ5TA81 110 aa2.52□□□□□ -2.01
LIMD1-201ENST00000273317 LOC100996750A0A140TA64 210 aa2.5□□□□□ -2.01
LIMD1-201ENST00000273317 MT4P47944 62 aa2.5□□□□□ -2.01
LIMD1-201ENST00000273317 LCE1BQ5T7P3 118 aa2.5□□□□□ -2.01
LIMD1-201ENST00000273317 TNXBP22105 4242 aa2.5□□□□□ -2.01
LIMD1-201ENST00000273317 LRP2P98164 4655 aa2.5□□□□□ -2.01
LIMD1-201ENST00000273317 MT3P25713 68 aa2.49□□□□□ -2.01
LIMD1-201ENST00000273317 KMT2CQ8NEZ4 4911 aaKnown RBP2.47□□□□□ -2.01
LIMD1-201ENST00000273317 MT1MQ8N339 61 aa2.47□□□□□ -2.01
LIMD1-201ENST00000273317 LCE2DQ5TA82 110 aaPredicted RBP2.46□□□□□ -2.02
LIMD1-201ENST00000273317 KRTAP4-9Q9BYQ8 210 aa2.45□□□□□ -2.02
LIMD1-201ENST00000273317 LPAP08519 4548 aa2.45□□□□□ -2.02
LIMD1-201ENST00000273317 LCE1DQ5T752 114 aa2.44□□□□□ -2.02
LIMD1-201ENST00000273317 KRTAP4-3Q9BYR4 195 aa2.42□□□□□ -2.02
LIMD1-201ENST00000273317 PCLOQ9Y6V0 5065 aa2.37□□□□□ -2.03
LIMD1-201ENST00000273317 KRTAP19-6Q3LI70 58 aa2.37□□□□□ -2.03
LIMD1-201ENST00000273317 KRTAP19-2Q3LHN2 52 aa2.36□□□□□ -2.03
LIMD1-201ENST00000273317 KRTAP2-3P0C7H8 128 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms