RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 VPS13DQ5THJ4 4388 aa7.71□□□□□ -1.17
PHRF1-201ENST00000264555 DNAH17Q9UFH2 4485 aa7.65□□□□□ -1.19
PHRF1-201ENST00000264555 DNAH10Q8IVF4 4471 aa7.63□□□□□ -1.19
PHRF1-201ENST00000264555 DNAH11Q96DT5 4516 aa7.63□□□□□ -1.19
PHRF1-201ENST00000264555 STARD9Q9P2P6 4700 aa7.54□□□□□ -1.2
PHRF1-201ENST00000264555 DNHD1Q96M86 4753 aa7.53□□□□□ -1.2
PHRF1-201ENST00000264555 DNAH3Q8TD57 4116 aa7.51□□□□□ -1.21
PHRF1-201ENST00000264555 DNAH2Q9P225 4427 aa7.48□□□□□ -1.21
PHRF1-201ENST00000264555 ANK2Q01484 3957 aa7.46□□□□□ -1.21
PHRF1-201ENST00000264555 DYNC1H1Q14204 4646 aaKnown RBP7.43□□□□□ -1.22
PHRF1-201ENST00000264555 LRP1BQ9NZR2 4599 aa7.41□□□□□ -1.22
PHRF1-201ENST00000264555 PRKDCP78527 4128 aaKnown RBP7.38□□□□□ -1.23
PHRF1-201ENST00000264555 DYNC2H1Q8NCM8 4307 aaKnown RBP7.36□□□□□ -1.23
PHRF1-201ENST00000264555 DNAH8Q96JB1 4490 aa7.34□□□□□ -1.23
PHRF1-201ENST00000264555 KRTAP15-1Q3LI76 137 aa7.32□□□□□ -1.24
PHRF1-201ENST00000264555 LORP23490 312 aaPredicted RBP7.32□□□□□ -1.24
PHRF1-201ENST00000264555 FAT1Q14517 4588 aa7.31□□□□□ -1.24
PHRF1-201ENST00000264555 SACSQ9NZJ4 4579 aa7.3□□□□□ -1.24
PHRF1-201ENST00000264555 FAT2Q9NYQ8 4349 aa7.27□□□□□ -1.25
PHRF1-201ENST00000264555 KMT2AQ03164 3969 aa7.27□□□□□ -1.25
PHRF1-201ENST00000264555 CMYA5Q8N3K9 4069 aa7.25□□□□□ -1.25
PHRF1-201ENST00000264555 INE1O15225 51 aa7.21□□□□□ -1.25
PHRF1-201ENST00000264555 KRTAP23-1A1A580 65 aa7.21□□□□□ -1.26
PHRF1-201ENST00000264555 KRTAP10-12P60413 245 aa7.2□□□□□ -1.26
PHRF1-201ENST00000264555 KRTAP4-1Q9BYQ7 146 aa7.2□□□□□ -1.26
PHRF1-201ENST00000264555 VPS13BQ7Z7G8 4022 aa7.13□□□□□ -1.27
PHRF1-201ENST00000264555 DNAH6Q9C0G6 4158 aa7.11□□□□□ -1.27
PHRF1-201ENST00000264555 RYR1P21817 5038 aa7.09□□□□□ -1.27
PHRF1-201ENST00000264555 KRTAP12-3P60328 96 aa7.03□□□□□ -1.28
PHRF1-201ENST00000264555 LCE3AQ5TA76 89 aa7.03□□□□□ -1.28
PHRF1-201ENST00000264555 LYSTQ99698 3801 aa7.01□□□□□ -1.29
PHRF1-201ENST00000264555 HECTD4Q9Y4D8 3996 aa7.01□□□□□ -1.29
PHRF1-201ENST00000264555 APOBP04114 4563 aaKnown RBP7□□□□□ -1.29
PHRF1-201ENST00000264555 DNAH7Q8WXX0 4024 aa7□□□□□ -1.29
PHRF1-201ENST00000264555 FRAS1Q86XX4 4008 aa6.97□□□□□ -1.29
PHRF1-201ENST00000264555 MT1HP80294 61 aa6.95□□□□□ -1.3
PHRF1-201ENST00000264555 KRTAP17-1Q9BYP8 105 aa6.89□□□□□ -1.31
PHRF1-201ENST00000264555 SPRR2GQ9BYE4 73 aa6.87□□□□□ -1.31
PHRF1-201ENST00000264555 KIAA1109Q2LD37 5005 aa6.86□□□□□ -1.31
PHRF1-201ENST00000264555 MT2AP02795 61 aa6.84□□□□□ -1.31
PHRF1-201ENST00000264555 RYR3Q15413 4870 aa6.84□□□□□ -1.31
PHRF1-201ENST00000264555 MYCBP2O75592 4640 aa6.8□□□□□ -1.32
PHRF1-201ENST00000264555 RYR2Q92736 4967 aa6.79□□□□□ -1.32
PHRF1-201ENST00000264555 LRP1Q07954 4544 aaKnown RBP6.76□□□□□ -1.33
PHRF1-201ENST00000264555 FAT3Q8TDW7 4589 aa6.74□□□□□ -1.33
PHRF1-201ENST00000264555 HYDINQ4G0P3 5121 aa6.74□□□□□ -1.33
PHRF1-201ENST00000264555 MT1FP04733 61 aa6.72□□□□□ -1.33
PHRF1-201ENST00000264555 CRCT1Q9UGL9 99 aa6.63□□□□□ -1.35
PHRF1-201ENST00000264555 HSPG2P98160 4391 aa6.58□□□□□ -1.36
PHRF1-201ENST00000264555 PKHD1P08F94 4074 aa6.58□□□□□ -1.36
PHRF1-201ENST00000264555 KRTAP8-1Q8IUC2 63 aa6.57□□□□□ -1.36
PHRF1-201ENST00000264555 PKD1P98161 4303 aa6.56□□□□□ -1.36
PHRF1-201ENST00000264555 KRTAP19-1Q8IUB9 90 aa6.49□□□□□ -1.37
PHRF1-201ENST00000264555 HERC2O95714 4834 aa6.47□□□□□ -1.37
PHRF1-201ENST00000264555 KRTAP19-8Q3LI54 63 aa6.45□□□□□ -1.38
PHRF1-201ENST00000264555 LRP2P98164 4655 aa6.41□□□□□ -1.38
PHRF1-201ENST00000264555 KRTAP19-5Q3LI72 72 aa6.37□□□□□ -1.39
PHRF1-201ENST00000264555 BIRC6Q9NR09 4857 aa6.36□□□□□ -1.39
PHRF1-201ENST00000264555 PKHD1L1Q86WI1 4243 aa6.36□□□□□ -1.39
PHRF1-201ENST00000264555 LCE2CQ5TA81 110 aa6.32□□□□□ -1.4
PHRF1-201ENST00000264555 TNXBP22105 4242 aa6.31□□□□□ -1.4
PHRF1-201ENST00000264555 KRTAP9-8Q9BYQ0 159 aa6.3□□□□□ -1.4
PHRF1-201ENST00000264555 LCE3CQ5T5A8 94 aa6.27□□□□□ -1.41
PHRF1-201ENST00000264555 KMT2CQ8NEZ4 4911 aaKnown RBP6.27□□□□□ -1.41
PHRF1-201ENST00000264555 KRTAP10-7P60409 375 aaPredicted RBP6.26□□□□□ -1.41
PHRF1-201ENST00000264555 MT1XP80297 61 aa6.25□□□□□ -1.41
PHRF1-201ENST00000264555 MT1BP07438 61 aa6.24□□□□□ -1.41
PHRF1-201ENST00000264555 LPAP08519 4548 aa6.23□□□□□ -1.41
PHRF1-201ENST00000264555 KRTAP19-4Q3LI73 84 aa6.22□□□□□ -1.41
PHRF1-201ENST00000264555 KRTAP10-5P60370 271 aa6.21□□□□□ -1.41
PHRF1-201ENST00000264555 HERC1Q15751 4861 aa6.21□□□□□ -1.42
PHRF1-201ENST00000264555 KRTAP19-2Q3LHN2 52 aa6.17□□□□□ -1.42
PHRF1-201ENST00000264555 KRTAP9-3Q9BYQ3 159 aa6.13□□□□□ -1.43
PHRF1-201ENST00000264555 PCLOQ9Y6V0 5065 aa6.11□□□□□ -1.43
PHRF1-201ENST00000264555 SPRR2FQ96RM1 72 aa6.1□□□□□ -1.43
PHRF1-201ENST00000264555 EPPK1P58107 5090 aaKnown RBP6.02□□□□□ -1.45
PHRF1-201ENST00000264555 MUC17Q685J3 4493 aa6□□□□□ -1.45
PHRF1-201ENST00000264555 SPRR5A0A1B0GTR4 108 aa5.99□□□□□ -1.45
PHRF1-201ENST00000264555 FLGP20930 4061 aaPredicted RBP5.99□□□□□ -1.45
PHRF1-201ENST00000264555 ABCA13Q86UQ4 5058 aa5.98□□□□□ -1.45
PHRF1-201ENST00000264555 KRTAP4-8A0A0G2JLE6 195 aa5.89□□□□□ -1.47
PHRF1-201ENST00000264555 KRTAP4-8Q9BYQ9 185 aa5.89□□□□□ -1.47
PHRF1-201ENST00000264555 LCE2BO14633 110 aa5.83□□□□□ -1.48
PHRF1-201ENST00000264555 MT1GP13640 62 aa5.73□□□□□ -1.49
PHRF1-201ENST00000264555 SPRR2EP22531 72 aa5.68□□□□□ -1.5
PHRF1-201ENST00000264555 SPRR2BP35325 72 aa5.68□□□□□ -1.5
PHRF1-201ENST00000264555 SPRR2AP35326 72 aa5.68□□□□□ -1.5
PHRF1-201ENST00000264555 RNF213Q63HN8 5207 aa5.65□□□□□ -1.5
PHRF1-201ENST00000264555 FAT4Q6V0I7 4981 aa5.64□□□□□ -1.51
PHRF1-201ENST00000264555 MT1LQ93083 61 aa5.6□□□□□ -1.51
PHRF1-201ENST00000264555 MT1EP04732 61 aa5.58□□□□□ -1.52
PHRF1-201ENST00000264555 LCE3BQ5TA77 95 aa5.57□□□□□ -1.52
PHRF1-201ENST00000264555 KRTAP19-3Q7Z4W3 81 aa5.56□□□□□ -1.52
PHRF1-201ENST00000264555 HMCN2Q8NDA2 5059 aa5.53□□□□□ -1.52
PHRF1-201ENST00000264555 KRTAP4-7Q9BYR0 210 aa5.52□□□□□ -1.53
PHRF1-201ENST00000264555 LCE2AQ5TA79 106 aaPredicted RBP5.52□□□□□ -1.53
PHRF1-201ENST00000264555 KRTAP19-6Q3LI70 58 aa5.51□□□□□ -1.53
PHRF1-201ENST00000264555 SPRR2DP22532 72 aa5.49□□□□□ -1.53
PHRF1-201ENST00000264555 KRTAP12-4P60329 112 aa5.47□□□□□ -1.53
PHRF1-201ENST00000264555 UBR4Q5T4S7 5183 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms