RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 TRRAPQ9Y4A5 3859 aa5.2□□□□□ -1.58
USP40-201ENST00000251722 SPRR2GQ9BYE4 73 aa5.2□□□□□ -1.58
USP40-201ENST00000251722 CSMD2Q7Z408 3487 aa5.19□□□□□ -1.58
USP40-201ENST00000251722 LORP23490 312 aaPredicted RBP5.16□□□□□ -1.58
USP40-201ENST00000251722 COL7A1Q02388 2944 aa5.16□□□□□ -1.58
USP40-201ENST00000251722 MT2AP02795 61 aa5.15□□□□□ -1.58
USP40-201ENST00000251722 DNAH5Q8TE73 4624 aa5.13□□□□□ -1.59
USP40-201ENST00000251722 SVEP1Q4LDE5 3571 aa5.12□□□□□ -1.59
USP40-201ENST00000251722 SPENQ96T58 3664 aaKnown RBP5.11□□□□□ -1.59
USP40-201ENST00000251722 KRTAP4-1Q9BYQ7 146 aa5.11□□□□□ -1.59
USP40-201ENST00000251722 BSNQ9UPA5 3926 aa5.06□□□□□ -1.6
USP40-201ENST00000251722 PLECQ15149 4684 aaKnown RBP5.04□□□□□ -1.6
USP40-201ENST00000251722 CUBNO60494 3623 aa5.03□□□□□ -1.6
USP40-201ENST00000251722 DNAH17Q9UFH2 4485 aa5.01□□□□□ -1.61
USP40-201ENST00000251722 DYNC1H1Q14204 4646 aaKnown RBP5.01□□□□□ -1.61
USP40-201ENST00000251722 VPS13DQ5THJ4 4388 aa5.01□□□□□ -1.61
USP40-201ENST00000251722 MT1FP04733 61 aa4.97□□□□□ -1.61
USP40-201ENST00000251722 KRTAP10-7P60409 375 aaPredicted RBP4.97□□□□□ -1.61
USP40-201ENST00000251722 SPRR5A0A1B0GTR4 108 aa4.93□□□□□ -1.62
USP40-201ENST00000251722 KRTAP10-5P60370 271 aa4.92□□□□□ -1.62
USP40-201ENST00000251722 SPRR2FQ96RM1 72 aa4.9□□□□□ -1.62
USP40-201ENST00000251722 HERC1Q15751 4861 aa4.9□□□□□ -1.63
USP40-201ENST00000251722 DYNC2H1Q8NCM8 4307 aaKnown RBP4.9□□□□□ -1.63
USP40-201ENST00000251722 KRTAP19-8Q3LI54 63 aa4.88□□□□□ -1.63
USP40-201ENST00000251722 FAT2Q9NYQ8 4349 aa4.88□□□□□ -1.63
USP40-201ENST00000251722 DNAH6Q9C0G6 4158 aa4.87□□□□□ -1.63
USP40-201ENST00000251722 VPS13CQ709C8 3753 aa4.87□□□□□ -1.63
USP40-201ENST00000251722 SACSQ9NZJ4 4579 aa4.85□□□□□ -1.63
USP40-201ENST00000251722 DNAH8Q96JB1 4490 aa4.82□□□□□ -1.64
USP40-201ENST00000251722 DNAH3Q8TD57 4116 aa4.81□□□□□ -1.64
USP40-201ENST00000251722 KRTAP19-5Q3LI72 72 aa4.8□□□□□ -1.64
USP40-201ENST00000251722 LRP1BQ9NZR2 4599 aa4.8□□□□□ -1.64
USP40-201ENST00000251722 LCE3CQ5T5A8 94 aa4.79□□□□□ -1.64
USP40-201ENST00000251722 AKAP9Q99996 3911 aa4.78□□□□□ -1.64
USP40-201ENST00000251722 HSPG2P98160 4391 aa4.77□□□□□ -1.65
USP40-201ENST00000251722 MYCBP2O75592 4640 aa4.73□□□□□ -1.65
USP40-201ENST00000251722 DNHD1Q96M86 4753 aa4.71□□□□□ -1.66
USP40-201ENST00000251722 SPRR2EP22531 72 aa4.69□□□□□ -1.66
USP40-201ENST00000251722 SPRR2BP35325 72 aa4.69□□□□□ -1.66
USP40-201ENST00000251722 SPRR2AP35326 72 aa4.69□□□□□ -1.66
USP40-201ENST00000251722 CSMD3Q7Z407 3707 aa4.67□□□□□ -1.66
USP40-201ENST00000251722 LRP1Q07954 4544 aaKnown RBP4.66□□□□□ -1.66
USP40-201ENST00000251722 ZNF469Q96JG9 3925 aaPredicted RBP4.66□□□□□ -1.66
USP40-201ENST00000251722 KRTAP19-1Q8IUB9 90 aa4.66□□□□□ -1.66
USP40-201ENST00000251722 RYR1P21817 5038 aa4.65□□□□□ -1.67
USP40-201ENST00000251722 APOBP04114 4563 aaKnown RBP4.64□□□□□ -1.67
USP40-201ENST00000251722 FAT1Q14517 4588 aa4.63□□□□□ -1.67
USP40-201ENST00000251722 RYR2Q92736 4967 aa4.63□□□□□ -1.67
USP40-201ENST00000251722 ANK2Q01484 3957 aa4.62□□□□□ -1.67
USP40-201ENST00000251722 FAT3Q8TDW7 4589 aa4.62□□□□□ -1.67
USP40-201ENST00000251722 RYR3Q15413 4870 aa4.6□□□□□ -1.67
USP40-201ENST00000251722 STARD9Q9P2P6 4700 aa4.6□□□□□ -1.67
USP40-201ENST00000251722 SPRR2DP22532 72 aa4.58□□□□□ -1.68
USP40-201ENST00000251722 DNAH7Q8WXX0 4024 aa4.57□□□□□ -1.68
USP40-201ENST00000251722 LCE2BO14633 110 aa4.56□□□□□ -1.68
USP40-201ENST00000251722 KRTAP9-8Q9BYQ0 159 aa4.56□□□□□ -1.68
USP40-201ENST00000251722 MT1XP80297 61 aa4.56□□□□□ -1.68
USP40-201ENST00000251722 PRKDCP78527 4128 aaKnown RBP4.54□□□□□ -1.68
USP40-201ENST00000251722 MT1BP07438 61 aa4.54□□□□□ -1.68
USP40-201ENST00000251722 MT1GP13640 62 aa4.54□□□□□ -1.68
USP40-201ENST00000251722 CMYA5Q8N3K9 4069 aa4.53□□□□□ -1.68
USP40-201ENST00000251722 KRTAP12-4P60329 112 aa4.52□□□□□ -1.69
USP40-201ENST00000251722 KRTAP9-3Q9BYQ3 159 aa4.51□□□□□ -1.69
USP40-201ENST00000251722 BIRC6Q9NR09 4857 aa4.49□□□□□ -1.69
USP40-201ENST00000251722 KRTAP17-1Q9BYP8 105 aa4.48□□□□□ -1.69
USP40-201ENST00000251722 LCE2CQ5TA81 110 aa4.47□□□□□ -1.69
USP40-201ENST00000251722 PKHD1L1Q86WI1 4243 aa4.45□□□□□ -1.7
USP40-201ENST00000251722 FRAS1Q86XX4 4008 aa4.42□□□□□ -1.7
USP40-201ENST00000251722 MT3P25713 68 aa4.35□□□□□ -1.71
USP40-201ENST00000251722 VPS13BQ7Z7G8 4022 aa4.33□□□□□ -1.72
USP40-201ENST00000251722 PKD1P98161 4303 aa4.33□□□□□ -1.72
USP40-201ENST00000251722 KRTAP19-3Q7Z4W3 81 aa4.31□□□□□ -1.72
USP40-201ENST00000251722 HERC2O95714 4834 aa4.3□□□□□ -1.72
USP40-201ENST00000251722 LCE2DQ5TA82 110 aaPredicted RBP4.3□□□□□ -1.72
USP40-201ENST00000251722 KMT2AQ03164 3969 aa4.29□□□□□ -1.72
USP40-201ENST00000251722 KIAA1109Q2LD37 5005 aa4.27□□□□□ -1.73
USP40-201ENST00000251722 KRTAP19-6Q3LI70 58 aa4.27□□□□□ -1.73
USP40-201ENST00000251722 LCE3BQ5TA77 95 aa4.27□□□□□ -1.73
USP40-201ENST00000251722 PCLOQ9Y6V0 5065 aa4.27□□□□□ -1.73
USP40-201ENST00000251722 MT1LQ93083 61 aa4.25□□□□□ -1.73
USP40-201ENST00000251722 KRTAP19-2Q3LHN2 52 aa4.22□□□□□ -1.73
USP40-201ENST00000251722 HECTD4Q9Y4D8 3996 aa4.22□□□□□ -1.73
USP40-201ENST00000251722 KRTAP4-8A0A0G2JLE6 195 aa4.19□□□□□ -1.74
USP40-201ENST00000251722 KRTAP4-8Q9BYQ9 185 aa4.19□□□□□ -1.74
USP40-201ENST00000251722 MT1EP04732 61 aa4.17□□□□□ -1.74
USP40-201ENST00000251722 LCE3DQ9BYE3 92 aa4.17□□□□□ -1.74
USP40-201ENST00000251722 LCE3EQ5T5B0 92 aa4.16□□□□□ -1.74
USP40-201ENST00000251722 LYSTQ99698 3801 aa4.16□□□□□ -1.74
USP40-201ENST00000251722 MUC17Q685J3 4493 aa4.16□□□□□ -1.74
USP40-201ENST00000251722 KRTAP9-2Q9BYQ4 174 aa4.15□□□□□ -1.74
USP40-201ENST00000251722 KMT2CQ8NEZ4 4911 aaKnown RBP4.06□□□□□ -1.76
USP40-201ENST00000251722 MT1MQ8N339 61 aa4.05□□□□□ -1.76
USP40-201ENST00000251722 LCE2AQ5TA79 106 aaPredicted RBP4.05□□□□□ -1.76
USP40-201ENST00000251722 KRTAP9-6A0A140TA67 174 aa4.04□□□□□ -1.76
USP40-201ENST00000251722 PKHD1P08F94 4074 aa4.02□□□□□ -1.77
USP40-201ENST00000251722 PRM1P04553 51 aa4.01□□□□□ -1.77
USP40-201ENST00000251722 LRP2P98164 4655 aa3.99□□□□□ -1.77
USP40-201ENST00000251722 FLGP20930 4061 aaPredicted RBP3.95□□□□□ -1.78
USP40-201ENST00000251722 LCE1AQ5T7P2 110 aa3.93□□□□□ -1.78
USP40-201ENST00000251722 HYDINQ4G0P3 5121 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms