RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 CLTCQ00610 1675 aaKnown RBP-4.27□□□□□ -3.09
SCN1A-215ENST00000637285 NALCNQ8IZF0 1738 aa-4.27□□□□□ -3.09
SCN1A-215ENST00000637285 ZC3H13Q5T200 1668 aaKnown RBP-4.28□□□□□ -3.09
SCN1A-215ENST00000637285 ATP10BO94823 1461 aa-4.28□□□□□ -3.09
SCN1A-215ENST00000637285 NDUFA4O00483 81 aa-4.28□□□□□ -3.09
SCN1A-215ENST00000637285 THOC2Q8NI27 1593 aaKnown RBP-4.28□□□□□ -3.09
SCN1A-215ENST00000637285 DEFB131BA0A096LNP1 70 aa-4.29□□□□□ -3.1
SCN1A-215ENST00000637285 S100A1P23297 94 aa-4.29□□□□□ -3.1
SCN1A-215ENST00000637285 FAUP35544 74 aaKnown RBP-4.29□□□□□ -3.1
SCN1A-215ENST00000637285 ACBD7Q8N6N7 88 aa-4.29□□□□□ -3.1
SCN1A-215ENST00000637285 PLCH1Q4KWH8 1693 aa-4.29□□□□□ -3.1
SCN1A-215ENST00000637285 GTF2H5Q6ZYL4 71 aa-4.3□□□□□ -3.1
SCN1A-215ENST00000637285 NCOA2Q15596 1464 aa-4.3□□□□□ -3.1
SCN1A-215ENST00000637285 TMEM203Q969S6 136 aa-4.31□□□□□ -3.1
SCN1A-215ENST00000637285 A0A1B0GUL6 1792 aa-4.32□□□□□ -3.1
SCN1A-215ENST00000637285 MINOS1Q5TGZ0 78 aa-4.32□□□□□ -3.1
SCN1A-215ENST00000637285 TSC22D3Q99576 134 aa-4.32□□□□□ -3.1
SCN1A-215ENST00000637285 CORTO00230 105 aa-4.33□□□□□ -3.1
SCN1A-215ENST00000637285 EPRSP07814 1512 aaKnown RBP-4.33□□□□□ -3.1
SCN1A-215ENST00000637285 LRRIQ1Q96JM4 1722 aa-4.33□□□□□ -3.1
SCN1A-215ENST00000637285 LOC105371267A0A1B0GV96 52 aa-4.34□□□□□ -3.1
SCN1A-215ENST00000637285 C20orf78Q9BR46 151 aa-4.35□□□□□ -3.11
SCN1A-215ENST00000637285 ERVK-7P63135 1459 aa-4.36□□□□□ -3.11
SCN1A-215ENST00000637285 MRPL33O75394 65 aaKnown RBP-4.36□□□□□ -3.11
SCN1A-215ENST00000637285 SFTA3P0C7M3 94 aa-4.36□□□□□ -3.11
SCN1A-215ENST00000637285 UMAD1C9J7I0 102 aa-4.37□□□□□ -3.11
SCN1A-215ENST00000637285 SMIM11AP58511 58 aa-4.37□□□□□ -3.11
SCN1A-215ENST00000637285 SARNPP82979 210 aaKnown RBP-4.37□□□□□ -3.11
SCN1A-215ENST00000637285 DEFB136Q30KP8 78 aa-4.37□□□□□ -3.11
SCN1A-215ENST00000637285 NCBP2-AS2Q69YL0 99 aa-4.37□□□□□ -3.11
SCN1A-215ENST00000637285 NEXMIFQ5QGS0 1516 aa-4.37□□□□□ -3.11
SCN1A-215ENST00000637285 FANCAO15360 1455 aa-4.37□□□□□ -3.11
SCN1A-215ENST00000637285 SPEGQ15772 3267 aa-4.38□□□□□ -3.11
SCN1A-215ENST00000637285 PEA15Q15121 130 aa-4.38□□□□□ -3.11
SCN1A-215ENST00000637285 ARFGEF2Q9Y6D5 1785 aa-4.38□□□□□ -3.11
SCN1A-215ENST00000637285 FCER1GP30273 86 aa-4.4□□□□□ -3.11
SCN1A-215ENST00000637285 CRIP1P50238 77 aa-4.4□□□□□ -3.11
SCN1A-215ENST00000637285 MRPS10P82664 201 aaKnown RBP-4.4□□□□□ -3.11
SCN1A-215ENST00000637285 WDFY3Q8IZQ1 3526 aa-4.41□□□□□ -3.11
SCN1A-215ENST00000637285 CCDC88BA6NC98 1476 aa-4.41□□□□□ -3.12
SCN1A-215ENST00000637285 MYMXA0A1B0GTQ4 84 aa-4.41□□□□□ -3.12
SCN1A-215ENST00000637285 DLEU1O43261 78 aa-4.41□□□□□ -3.12
SCN1A-215ENST00000637285 LINC00032P0C843 101 aa-4.41□□□□□ -3.12
SCN1A-215ENST00000637285 DNMBPQ6XZF7 1577 aa-4.41□□□□□ -3.12
SCN1A-215ENST00000637285 DMDP11532 3685 aa-4.42□□□□□ -3.12
SCN1A-215ENST00000637285 VPS13CQ709C8 3753 aa-4.42□□□□□ -3.12
SCN1A-215ENST00000637285 C6orf48Q9UBA6 75 aa-4.43□□□□□ -3.12
SCN1A-215ENST00000637285 A0A1B0GV90 55 aa-4.44□□□□□ -3.12
SCN1A-215ENST00000637285 LEAP2Q969E1 77 aa-4.44□□□□□ -3.12
SCN1A-215ENST00000637285 DPY30Q9C005 99 aa-4.44□□□□□ -3.12
SCN1A-215ENST00000637285 URB2Q14146 1524 aaKnown RBP-4.45□□□□□ -3.12
SCN1A-215ENST00000637285 FAM107BQ9H098 131 aa-4.45□□□□□ -3.12
SCN1A-215ENST00000637285 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-4.46□□□□□ -3.12
SCN1A-215ENST00000637285 NRAPQ86VF7 1730 aa-4.46□□□□□ -3.12
SCN1A-215ENST00000637285 CD163L1Q9NR16 1453 aa-4.47□□□□□ -3.12
SCN1A-215ENST00000637285 GNG8Q9UK08 70 aa-4.47□□□□□ -3.13
SCN1A-215ENST00000637285 TJP1Q07157 1748 aa-4.48□□□□□ -3.13
SCN1A-215ENST00000637285 CEBPZOSA8MTT3 80 aa-4.48□□□□□ -3.13
SCN1A-215ENST00000637285 CENPEQ02224 2701 aa-4.48□□□□□ -3.13
SCN1A-215ENST00000637285 NREPQ16612 68 aa-4.49□□□□□ -3.13
SCN1A-215ENST00000637285 UBR1Q8IWV7 1749 aa-4.49□□□□□ -3.13
SCN1A-215ENST00000637285 MYO3AQ8NEV4 1616 aa-4.5□□□□□ -3.13
SCN1A-215ENST00000637285 MED14O60244 1454 aa-4.5□□□□□ -3.13
SCN1A-215ENST00000637285 UBL5Q9BZL1 73 aa-4.52□□□□□ -3.13
SCN1A-215ENST00000637285 KCNQ1DNQ9H478 68 aa-4.52□□□□□ -3.13
SCN1A-215ENST00000637285 ARHGAP35Q9NRY4 1499 aa-4.52□□□□□ -3.13
SCN1A-215ENST00000637285 ZFYVE16Q7Z3T8 1539 aa-4.52□□□□□ -3.13
SCN1A-215ENST00000637285 MAP3K4Q9Y6R4 1608 aa-4.53□□□□□ -3.13
SCN1A-215ENST00000637285 HFM1A2PYH4 1435 aa-4.53□□□□□ -3.13
SCN1A-215ENST00000637285 RABAC1Q9UI14 185 aa-4.53□□□□□ -3.13
SCN1A-215ENST00000637285 PPLO60437 1756 aa-4.53□□□□□ -3.14
SCN1A-215ENST00000637285 RICTORQ6R327 1708 aa-4.54□□□□□ -3.14
SCN1A-215ENST00000637285 S100A10P60903 97 aa-4.54□□□□□ -3.14
SCN1A-215ENST00000637285 INO80Q9ULG1 1556 aaPredicted RBP-4.54□□□□□ -3.14
SCN1A-215ENST00000637285 RNF17Q9BXT8 1623 aaKnown RBP-4.54□□□□□ -3.14
SCN1A-215ENST00000637285 CEP350Q5VT06 3117 aa-4.57□□□□□ -3.14
SCN1A-215ENST00000637285 PIK3C2BO00750 1634 aa-4.57□□□□□ -3.14
SCN1A-215ENST00000637285 PCNTO95613 3336 aa-4.59□□□□□ -3.14
SCN1A-215ENST00000637285 HMGA1P17096 107 aaKnown RBP-4.59□□□□□ -3.14
SCN1A-215ENST00000637285 C20orf202A1L168 122 aa-4.6□□□□□ -3.15
SCN1A-215ENST00000637285 RBP2P50120 134 aa-4.62□□□□□ -3.15
SCN1A-215ENST00000637285 FRYLO94915 3013 aa-4.63□□□□□ -3.15
SCN1A-215ENST00000637285 KIF21BO75037 1637 aa-4.63□□□□□ -3.15
SCN1A-215ENST00000637285 CROCC2H7BZ55 1655 aa-4.64□□□□□ -3.15
SCN1A-215ENST00000637285 LINC00643Q86TS7 51 aa-4.64□□□□□ -3.15
SCN1A-215ENST00000637285 RALGAPBQ86X10 1494 aa-4.64□□□□□ -3.15
SCN1A-215ENST00000637285 CFAP43Q8NDM7 1665 aa-4.64□□□□□ -3.15
SCN1A-215ENST00000637285 GYPAP02724 150 aa-4.65□□□□□ -3.15
SCN1A-215ENST00000637285 ETDCA0A1B0GVM5 59 aa-4.66□□□□□ -3.16
SCN1A-215ENST00000637285 ASXL1Q8IXJ9 1541 aa-4.67□□□□□ -3.16
SCN1A-215ENST00000637285 PVALEFA0A1B0GWK0 134 aa-4.67□□□□□ -3.16
SCN1A-215ENST00000637285 SNRPFP62306 86 aaKnown RBP-4.67□□□□□ -3.16
SCN1A-215ENST00000637285 CEP162Q5TB80 1403 aa-4.67□□□□□ -3.16
SCN1A-215ENST00000637285 KIF14Q15058 1648 aa-4.68□□□□□ -3.16
SCN1A-215ENST00000637285 MYO5CQ9NQX4 1742 aa-4.68□□□□□ -3.16
SCN1A-215ENST00000637285 S100A12P80511 92 aa-4.68□□□□□ -3.16
SCN1A-215ENST00000637285 PREX2Q70Z35 1606 aa-4.7□□□□□ -3.16
SCN1A-215ENST00000637285 S100A8P05109 93 aa-4.7□□□□□ -3.16
SCN1A-215ENST00000637285 HMGN1P05114 100 aa-4.7□□□□□ -3.16
SCN1A-215ENST00000637285 C2orf88Q9BSF0 95 aa-4.71□□□□□ -3.16
Retrieved 100 of 20,778 RNA–protein pairs in 216.8 ms