RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 LCA10Q71F78 164 aa7.59□□□□□ -1.19
LIG1-221ENST00000613670 LINC01558Q9Y6Z2 57 aa7.57□□□□□ -1.2
LIG1-221ENST00000613670 WWC2-AS2Q96NR7 200 aa7.56□□□□□ -1.2
LIG1-221ENST00000613670 C7orf65Q6ZTY9 151 aa7.55□□□□□ -1.2
LIG1-221ENST00000613670 FAM229AH3BQW9 127 aa7.54□□□□□ -1.2
LIG1-221ENST00000613670 RBM12B-AS1Q9P1G2 102 aa7.54□□□□□ -1.2
LIG1-221ENST00000613670 IGLV7-43P04211 117 aa7.53□□□□□ -1.2
LIG1-221ENST00000613670 C8orf87E5RJ46 101 aa7.51□□□□□ -1.21
LIG1-221ENST00000613670 Q5W150 140 aa7.5□□□□□ -1.21
LIG1-221ENST00000613670 Q6ZR54 194 aa7.49□□□□□ -1.21
LIG1-221ENST00000613670 Q96NJ1 140 aa7.49□□□□□ -1.21
LIG1-221ENST00000613670 SSBP3-AS1Q7Z2R9 100 aa7.48□□□□□ -1.21
LIG1-221ENST00000613670 COL7A1Q02388 2944 aa7.47□□□□□ -1.21
LIG1-221ENST00000613670 PRAC1Q96KF2 57 aa7.47□□□□□ -1.21
LIG1-221ENST00000613670 TGP01266 2768 aa7.46□□□□□ -1.21
LIG1-221ENST00000613670 KRTAP13-1Q8IUC0 172 aa7.46□□□□□ -1.21
LIG1-221ENST00000613670 CSMD3Q7Z407 3707 aa7.45□□□□□ -1.22
LIG1-221ENST00000613670 UQCR11O14957 56 aa7.45□□□□□ -1.22
LIG1-221ENST00000613670 MIR22HGQ0VDD5 57 aa7.45□□□□□ -1.22
LIG1-221ENST00000613670 LINC00483Q53H64 154 aa7.44□□□□□ -1.22
LIG1-221ENST00000613670 PLAC8Q9NZF1 115 aa7.43□□□□□ -1.22
LIG1-221ENST00000613670 Q6ZRN7 208 aaPredicted RBP7.42□□□□□ -1.22
LIG1-221ENST00000613670 Q8N1X5 172 aa7.41□□□□□ -1.22
LIG1-221ENST00000613670 PLA2G1BP04054 148 aaKnown RBP7.41□□□□□ -1.22
LIG1-221ENST00000613670 TYMSOSQ8TAI1 123 aa7.41□□□□□ -1.22
LIG1-221ENST00000613670 A6NN06 94 aa7.38□□□□□ -1.23
LIG1-221ENST00000613670 DMBT1Q9UGM3 2413 aaPredicted RBP7.34□□□□□ -1.24
LIG1-221ENST00000613670 DMAC1Q96GE9 116 aa7.32□□□□□ -1.24
LIG1-221ENST00000613670 C9orf92A6NGG3 77 aa7.31□□□□□ -1.24
LIG1-221ENST00000613670 ASB16-AS1Q495Z4 193 aa7.3□□□□□ -1.24
LIG1-221ENST00000613670 KRTAP10-2P60368 255 aa7.29□□□□□ -1.24
LIG1-221ENST00000613670 ADM2Q7Z4H4 148 aa7.29□□□□□ -1.24
LIG1-221ENST00000613670 FBN3Q75N90 2809 aa7.29□□□□□ -1.24
LIG1-221ENST00000613670 K7ERS5 55 aa7.28□□□□□ -1.24
LIG1-221ENST00000613670 FLG2Q5D862 2391 aaPredicted RBP7.27□□□□□ -1.25
LIG1-221ENST00000613670 SMR3BP02814 79 aaPredicted RBP7.27□□□□□ -1.25
LIG1-221ENST00000613670 LINC00304Q8N9R0 145 aa7.23□□□□□ -1.25
LIG1-221ENST00000613670 KRTAP10-1P60331 282 aa7.2□□□□□ -1.26
LIG1-221ENST00000613670 LINC01554Q52M75 96 aa7.2□□□□□ -1.26
LIG1-221ENST00000613670 KRTAP13-2Q52LG2 175 aa7.2□□□□□ -1.26
LIG1-221ENST00000613670 CSAG1Q6PB30 78 aa7.2□□□□□ -1.26
LIG1-221ENST00000613670 SPATA8Q6RVD6 105 aa7.16□□□□□ -1.26
LIG1-221ENST00000613670 MEGF8Q7Z7M0 2845 aa7.15□□□□□ -1.26
LIG1-221ENST00000613670 DNAH10Q8IVF4 4471 aa7.11□□□□□ -1.27
LIG1-221ENST00000613670 A0A1B0GU33 70 aa7.1□□□□□ -1.27
LIG1-221ENST00000613670 CRIPTQ9P021 101 aa7.1□□□□□ -1.27
LIG1-221ENST00000613670 KRTAP13-3Q3SY46 172 aa7.09□□□□□ -1.27
LIG1-221ENST00000613670 HUWE1Q7Z6Z7 4374 aaKnown RBP7.08□□□□□ -1.28
LIG1-221ENST00000613670 A0A0D9SG42 100 aa7.04□□□□□ -1.28
LIG1-221ENST00000613670 ANK2Q01484 3957 aa7.02□□□□□ -1.29
LIG1-221ENST00000613670 KRTAP16-1A8MUX0 517 aa6.99□□□□□ -1.29
LIG1-221ENST00000613670 KRTAP1-4P0C5Y4 121 aa6.97□□□□□ -1.29
LIG1-221ENST00000613670 H3BS24 57 aa6.96□□□□□ -1.3
LIG1-221ENST00000613670 SPINT4Q6UDR6 99 aa6.93□□□□□ -1.3
LIG1-221ENST00000613670 H1FX-AS1Q4G0G2 97 aa6.92□□□□□ -1.3
LIG1-221ENST00000613670 Q6ZSA8 131 aa6.91□□□□□ -1.3
LIG1-221ENST00000613670 LYSTQ99698 3801 aa6.86□□□□□ -1.31
LIG1-221ENST00000613670 PLECQ15149 4684 aaKnown RBP6.86□□□□□ -1.31
LIG1-221ENST00000613670 DNAH9Q9NYC9 4486 aa6.85□□□□□ -1.31
LIG1-221ENST00000613670 H0YAA0 97 aa6.85□□□□□ -1.31
LIG1-221ENST00000613670 COX6B2Q6YFQ2 88 aa6.82□□□□□ -1.32
LIG1-221ENST00000613670 KRTAP25-1Q3LHN0 102 aa6.81□□□□□ -1.32
LIG1-221ENST00000613670 RPL37P61927 97 aaKnown RBP6.77□□□□□ -1.33
LIG1-221ENST00000613670 A8MUU9 505 aa6.76□□□□□ -1.33
LIG1-221ENST00000613670 DNAH1Q9P2D7 4330 aa6.75□□□□□ -1.33
LIG1-221ENST00000613670 C20orf166-AS1Q96NR2 134 aa6.74□□□□□ -1.33
LIG1-221ENST00000613670 ROMO1P60602 79 aa6.74□□□□□ -1.33
LIG1-221ENST00000613670 RPS29P62273 56 aaKnown RBP6.73□□□□□ -1.33
LIG1-221ENST00000613670 S4R3F8 94 aa6.72□□□□□ -1.33
LIG1-221ENST00000613670 DNAH8Q96JB1 4490 aa6.7□□□□□ -1.34
LIG1-221ENST00000613670 DNAH11Q96DT5 4516 aa6.68□□□□□ -1.34
LIG1-221ENST00000613670 STARD9Q9P2P6 4700 aa6.68□□□□□ -1.34
LIG1-221ENST00000613670 KRTAP3-1Q9BYR8 98 aa6.66□□□□□ -1.34
LIG1-221ENST00000613670 DNAH7Q8WXX0 4024 aa6.65□□□□□ -1.35
LIG1-221ENST00000613670 CMYA5Q8N3K9 4069 aa6.65□□□□□ -1.35
LIG1-221ENST00000613670 FRAS1Q86XX4 4008 aa6.64□□□□□ -1.35
LIG1-221ENST00000613670 KMT2AQ03164 3969 aa6.6□□□□□ -1.35
LIG1-221ENST00000613670 DNAH3Q8TD57 4116 aa6.6□□□□□ -1.35
LIG1-221ENST00000613670 C10orf95Q9H7T3 257 aa6.59□□□□□ -1.35
LIG1-221ENST00000613670 Q5VSD8 79 aa6.58□□□□□ -1.36
LIG1-221ENST00000613670 VPS13DQ5THJ4 4388 aa6.58□□□□□ -1.36
LIG1-221ENST00000613670 DNAH17Q9UFH2 4485 aa6.57□□□□□ -1.36
LIG1-221ENST00000613670 LRP1BQ9NZR2 4599 aa6.55□□□□□ -1.36
LIG1-221ENST00000613670 PRKDCP78527 4128 aaKnown RBP6.53□□□□□ -1.36
LIG1-221ENST00000613670 P0C880 135 aa6.51□□□□□ -1.37
LIG1-221ENST00000613670 DNAH2Q9P225 4427 aa6.5□□□□□ -1.37
LIG1-221ENST00000613670 XP32Q5T750 250 aa6.45□□□□□ -1.38
LIG1-221ENST00000613670 NDUFAF8A1L188 74 aa6.45□□□□□ -1.38
LIG1-221ENST00000613670 M0QZ58 72 aa6.45□□□□□ -1.38
LIG1-221ENST00000613670 R4GN34 69 aa6.45□□□□□ -1.38
LIG1-221ENST00000613670 DNAH6Q9C0G6 4158 aa6.44□□□□□ -1.38
LIG1-221ENST00000613670 HECTD4Q9Y4D8 3996 aa6.43□□□□□ -1.38
LIG1-221ENST00000613670 KRTAP13-4Q3LI77 160 aa6.43□□□□□ -1.38
LIG1-221ENST00000613670 KRTAP10-8P60410 259 aa6.41□□□□□ -1.38
LIG1-221ENST00000613670 ALMS1Q8TCU4 4167 aa6.4□□□□□ -1.39
LIG1-221ENST00000613670 DNAH5Q8TE73 4624 aa6.4□□□□□ -1.39
LIG1-221ENST00000613670 DNHD1Q96M86 4753 aa6.4□□□□□ -1.39
LIG1-221ENST00000613670 KRTAP10-6P60371 365 aaPredicted RBP6.38□□□□□ -1.39
LIG1-221ENST00000613670 FAT1Q14517 4588 aa6.38□□□□□ -1.39
LIG1-221ENST00000613670 TPRXLQ17RH7 258 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms