RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 SPINK1P00995 79 aa9.24□□□□□ -0.93
UPF1-204ENST00000596842 C8orf17Q9NRJ1 99 aa9.22□□□□□ -0.93
UPF1-204ENST00000596842 CSAG1Q6PB30 78 aa9.22□□□□□ -0.93
UPF1-204ENST00000596842 CIRBP-AS1Q8TBR5 109 aa9.22□□□□□ -0.93
UPF1-204ENST00000596842 PSORS1C2Q9UIG4 136 aa9.22□□□□□ -0.93
UPF1-204ENST00000596842 DYNC2H1Q8NCM8 4307 aaKnown RBP9.21□□□□□ -0.93
UPF1-204ENST00000596842 A0A087X002 238 aa9.21□□□□□ -0.93
UPF1-204ENST00000596842 NOTCH2NLQ7Z3S9 236 aa9.21□□□□□ -0.93
UPF1-204ENST00000596842 PLECQ15149 4684 aaKnown RBP9.21□□□□□ -0.94
UPF1-204ENST00000596842 SPANXA2-OT1Q8N9U9 137 aa9.19□□□□□ -0.94
UPF1-204ENST00000596842 H3BPC8 53 aa9.19□□□□□ -0.94
UPF1-204ENST00000596842 RTL8CO15255 209 aa9.18□□□□□ -0.94
UPF1-204ENST00000596842 SPACA4Q8TDM5 124 aa9.17□□□□□ -0.94
UPF1-204ENST00000596842 FBN3Q75N90 2809 aa9.16□□□□□ -0.94
UPF1-204ENST00000596842 Q96NJ1 140 aa9.16□□□□□ -0.94
UPF1-204ENST00000596842 A0A087WTM6 91 aa9.16□□□□□ -0.94
UPF1-204ENST00000596842 A0A1B0GVX0 72 aa9.16□□□□□ -0.94
UPF1-204ENST00000596842 KRTAP13-1Q8IUC0 172 aa9.15□□□□□ -0.94
UPF1-204ENST00000596842 FRAS1Q86XX4 4008 aa9.15□□□□□ -0.95
UPF1-204ENST00000596842 NUPR2A6NF83 97 aa9.14□□□□□ -0.95
UPF1-204ENST00000596842 Q6ZRN7 208 aaPredicted RBP9.14□□□□□ -0.95
UPF1-204ENST00000596842 MRPL34Q9BQ48 92 aaKnown RBP9.13□□□□□ -0.95
UPF1-204ENST00000596842 LINC01558Q9Y6Z2 57 aa9.13□□□□□ -0.95
UPF1-204ENST00000596842 IGLV7-46A0A075B6I9 117 aa9.13□□□□□ -0.95
UPF1-204ENST00000596842 C1orf134Q5TEV5 83 aa9.12□□□□□ -0.95
UPF1-204ENST00000596842 WWC2-AS2Q96NR7 200 aa9.12□□□□□ -0.95
UPF1-204ENST00000596842 TP53AIP1Q9HCN2 124 aa9.12□□□□□ -0.95
UPF1-204ENST00000596842 MEGF8Q7Z7M0 2845 aa9.12□□□□□ -0.95
UPF1-204ENST00000596842 IGLV5-52A0A0A0MRZ9 124 aa9.11□□□□□ -0.95
UPF1-204ENST00000596842 HRES1P13985 223 aa9.11□□□□□ -0.95
UPF1-204ENST00000596842 MIR22HGQ0VDD5 57 aa9.1□□□□□ -0.95
UPF1-204ENST00000596842 CRIPTQ9P021 101 aa9.1□□□□□ -0.95
UPF1-204ENST00000596842 ZNF861PO60384 105 aa9.09□□□□□ -0.95
UPF1-204ENST00000596842 LY6G6CO95867 125 aa9.06□□□□□ -0.96
UPF1-204ENST00000596842 ACYP2P14621 99 aa9.04□□□□□ -0.96
UPF1-204ENST00000596842 Q5W150 140 aa9.04□□□□□ -0.96
UPF1-204ENST00000596842 STARD9Q9P2P6 4700 aa9.03□□□□□ -0.96
UPF1-204ENST00000596842 KMT2AQ03164 3969 aa9.03□□□□□ -0.96
UPF1-204ENST00000596842 UQCR11O14957 56 aa9.03□□□□□ -0.96
UPF1-204ENST00000596842 LINC00483Q53H64 154 aa9.01□□□□□ -0.97
UPF1-204ENST00000596842 PRKDCP78527 4128 aaKnown RBP9□□□□□ -0.97
UPF1-204ENST00000596842 Q6ZR54 194 aa8.99□□□□□ -0.97
UPF1-204ENST00000596842 IGKV2D-30A0A075B6S6 120 aa8.97□□□□□ -0.97
UPF1-204ENST00000596842 IGKV2-30P06310 120 aa8.97□□□□□ -0.97
UPF1-204ENST00000596842 IGLV7-43P04211 117 aa8.97□□□□□ -0.97
UPF1-204ENST00000596842 SSBP3-AS1Q7Z2R9 100 aa8.96□□□□□ -0.98
UPF1-204ENST00000596842 DNAH8Q96JB1 4490 aa8.95□□□□□ -0.98
UPF1-204ENST00000596842 PLAC8Q9NZF1 115 aa8.95□□□□□ -0.98
UPF1-204ENST00000596842 ASB16-AS1Q495Z4 193 aa8.95□□□□□ -0.98
UPF1-204ENST00000596842 HECTD4Q9Y4D8 3996 aa8.91□□□□□ -0.98
UPF1-204ENST00000596842 SPINT4Q6UDR6 99 aa8.9□□□□□ -0.98
UPF1-204ENST00000596842 PLA2G1BP04054 148 aaKnown RBP8.88□□□□□ -0.99
UPF1-204ENST00000596842 DNAH17Q9UFH2 4485 aa8.88□□□□□ -0.99
UPF1-204ENST00000596842 KRTAP10-2P60368 255 aa8.88□□□□□ -0.99
UPF1-204ENST00000596842 DNAH2Q9P225 4427 aa8.85□□□□□ -0.99
UPF1-204ENST00000596842 DNAH6Q9C0G6 4158 aa8.82□□□□□ -1
UPF1-204ENST00000596842 VPS13DQ5THJ4 4388 aa8.82□□□□□ -1
UPF1-204ENST00000596842 DNAH11Q96DT5 4516 aa8.8□□□□□ -1
UPF1-204ENST00000596842 K7ERS5 55 aa8.79□□□□□ -1
UPF1-204ENST00000596842 FAM229AH3BQW9 127 aa8.78□□□□□ -1
UPF1-204ENST00000596842 KRTAP13-2Q52LG2 175 aa8.77□□□□□ -1.01
UPF1-204ENST00000596842 KRTAP13-3Q3SY46 172 aa8.74□□□□□ -1.01
UPF1-204ENST00000596842 KRTAP10-1P60331 282 aa8.72□□□□□ -1.01
UPF1-204ENST00000596842 Q8N1X5 172 aa8.71□□□□□ -1.02
UPF1-204ENST00000596842 ALMS1Q8TCU4 4167 aa8.7□□□□□ -1.02
UPF1-204ENST00000596842 DMAC1Q96GE9 116 aa8.7□□□□□ -1.02
UPF1-204ENST00000596842 SPATA8Q6RVD6 105 aa8.68□□□□□ -1.02
UPF1-204ENST00000596842 DNHD1Q96M86 4753 aa8.68□□□□□ -1.02
UPF1-204ENST00000596842 TYMSOSQ8TAI1 123 aa8.67□□□□□ -1.02
UPF1-204ENST00000596842 ROMO1P60602 79 aa8.67□□□□□ -1.02
UPF1-204ENST00000596842 LRP1BQ9NZR2 4599 aa8.67□□□□□ -1.02
UPF1-204ENST00000596842 SMR3BP02814 79 aaPredicted RBP8.62□□□□□ -1.03
UPF1-204ENST00000596842 DNAH5Q8TE73 4624 aa8.61□□□□□ -1.03
UPF1-204ENST00000596842 C9orf92A6NGG3 77 aa8.6□□□□□ -1.03
UPF1-204ENST00000596842 PKD1P98161 4303 aa8.57□□□□□ -1.04
UPF1-204ENST00000596842 KRTAP16-1A8MUX0 517 aa8.56□□□□□ -1.04
UPF1-204ENST00000596842 NDUFAF8A1L188 74 aa8.56□□□□□ -1.04
UPF1-204ENST00000596842 KRTAP1-4P0C5Y4 121 aa8.56□□□□□ -1.04
UPF1-204ENST00000596842 KRTAP25-1Q3LHN0 102 aa8.55□□□□□ -1.04
UPF1-204ENST00000596842 VPS13BQ7Z7G8 4022 aa8.54□□□□□ -1.04
UPF1-204ENST00000596842 A0A0D9SG42 100 aa8.54□□□□□ -1.04
UPF1-204ENST00000596842 HYDINQ4G0P3 5121 aa8.52□□□□□ -1.05
UPF1-204ENST00000596842 A8MUU9 505 aa8.49□□□□□ -1.05
UPF1-204ENST00000596842 LINC00304Q8N9R0 145 aa8.49□□□□□ -1.05
UPF1-204ENST00000596842 A0A0A0MQY5 61 aa8.48□□□□□ -1.05
UPF1-204ENST00000596842 FAT2Q9NYQ8 4349 aa8.47□□□□□ -1.05
UPF1-204ENST00000596842 Q6ZSA8 131 aa8.46□□□□□ -1.06
UPF1-204ENST00000596842 A0A1B0GU33 70 aa8.46□□□□□ -1.06
UPF1-204ENST00000596842 PKHD1P08F94 4074 aa8.4□□□□□ -1.07
UPF1-204ENST00000596842 FAT1Q14517 4588 aa8.35□□□□□ -1.07
UPF1-204ENST00000596842 P0C880 135 aa8.28□□□□□ -1.08
UPF1-204ENST00000596842 C10orf95Q9H7T3 257 aa8.26□□□□□ -1.09
UPF1-204ENST00000596842 H0YAA0 97 aa8.24□□□□□ -1.09
UPF1-204ENST00000596842 C20orf166-AS1Q96NR2 134 aa8.2□□□□□ -1.1
UPF1-204ENST00000596842 KRTAP3-1Q9BYR8 98 aa8.19□□□□□ -1.1
UPF1-204ENST00000596842 H1FX-AS1Q4G0G2 97 aa8.17□□□□□ -1.1
UPF1-204ENST00000596842 DYNC1H1Q14204 4646 aaKnown RBP8.16□□□□□ -1.1
UPF1-204ENST00000596842 LUZP6Q538Z0 58 aa8.14□□□□□ -1.11
UPF1-204ENST00000596842 SACSQ9NZJ4 4579 aa8.13□□□□□ -1.11
UPF1-204ENST00000596842 MYCBP2O75592 4640 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms