RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 HIST1H4AP62805 103 aaKnown RBP5.74□□□□□ -1.49
LIG1-213ENST00000596672 HRCT1Q6UXD1 115 aa5.74□□□□□ -1.49
LIG1-213ENST00000596672 SS18L2Q9UHA2 77 aa5.74□□□□□ -1.49
LIG1-213ENST00000596672 COX7CP15954 63 aa5.73□□□□□ -1.49
LIG1-213ENST00000596672 RBM3P98179 157 aaKnown RBP5.73□□□□□ -1.49
LIG1-213ENST00000596672 UBL5Q9BZL1 73 aa5.73□□□□□ -1.49
LIG1-213ENST00000596672 LINC00846Q9NV44 126 aa5.72□□□□□ -1.49
LIG1-213ENST00000596672 LOC110117498A0A087WWA1 95 aa5.71□□□□□ -1.5
LIG1-213ENST00000596672 SERP2Q8N6R1 65 aa5.7□□□□□ -1.5
LIG1-213ENST00000596672 DSCR8Q96T75 97 aa5.7□□□□□ -1.5
LIG1-213ENST00000596672 IGKV3D-7A0A0C4DH55 119 aa5.68□□□□□ -1.5
LIG1-213ENST00000596672 C9orf92A6NGG3 77 aa5.68□□□□□ -1.5
LIG1-213ENST00000596672 F8WEM9 126 aa5.68□□□□□ -1.5
LIG1-213ENST00000596672 SEC61BP60468 96 aaKnown RBP5.68□□□□□ -1.5
LIG1-213ENST00000596672 Q6ZQT0 140 aa5.68□□□□□ -1.5
LIG1-213ENST00000596672 SMIM20Q8N5G0 67 aa5.68□□□□□ -1.5
LIG1-213ENST00000596672 SVIPQ8NHG7 77 aa5.68□□□□□ -1.5
LIG1-213ENST00000596672 FSIP2Q5CZC0 6907 aa5.68□□□□□ -1.5
LIG1-213ENST00000596672 FLGP20930 4061 aaPredicted RBP5.66□□□□□ -1.5
LIG1-213ENST00000596672 TRBV7-4A0A0J9YYF1 115 aa5.66□□□□□ -1.5
LIG1-213ENST00000596672 PCOTHQ58A44 107 aa5.66□□□□□ -1.5
LIG1-213ENST00000596672 C1orf195Q5TG92 126 aa5.66□□□□□ -1.5
LIG1-213ENST00000596672 KRTAP9-6A0A140TA67 174 aa5.64□□□□□ -1.51
LIG1-213ENST00000596672 TMEM258P61165 79 aa5.64□□□□□ -1.51
LIG1-213ENST00000596672 RPS28P62857 69 aaKnown RBP5.64□□□□□ -1.51
LIG1-213ENST00000596672 CXCL6P80162 114 aa5.63□□□□□ -1.51
LIG1-213ENST00000596672 MT1HP80294 61 aa5.63□□□□□ -1.51
LIG1-213ENST00000596672 CD164Q04900 197 aa5.63□□□□□ -1.51
LIG1-213ENST00000596672 Q5XG85 94 aa5.63□□□□□ -1.51
LIG1-213ENST00000596672 IGFL1Q6UW32 110 aa5.63□□□□□ -1.51
LIG1-213ENST00000596672 IGLV8-61A0A075B6I0 122 aa5.62□□□□□ -1.51
LIG1-213ENST00000596672 J3KT08 172 aa5.62□□□□□ -1.51
LIG1-213ENST00000596672 A0A1B0GW54 56 aa5.61□□□□□ -1.51
LIG1-213ENST00000596672 A0A1W2PNM2 257 aa5.61□□□□□ -1.51
LIG1-213ENST00000596672 LIMD2Q9BT23 127 aa5.61□□□□□ -1.51
LIG1-213ENST00000596672 TRAV7A0A075B6U4 112 aa5.59□□□□□ -1.51
LIG1-213ENST00000596672 A0A087WVE0 104 aa5.59□□□□□ -1.51
LIG1-213ENST00000596672 Q6ZVQ6 151 aa5.59□□□□□ -1.51
LIG1-213ENST00000596672 RPL37P61927 97 aaKnown RBP5.55□□□□□ -1.52
LIG1-213ENST00000596672 NDUFC1O43677 76 aa5.54□□□□□ -1.52
LIG1-213ENST00000596672 LORP23490 312 aaPredicted RBP5.54□□□□□ -1.52
LIG1-213ENST00000596672 NREPQ16612 68 aa5.54□□□□□ -1.52
LIG1-213ENST00000596672 A0A087WSZ3 146 aa5.53□□□□□ -1.52
LIG1-213ENST00000596672 KRTAP10-6P60371 365 aaPredicted RBP5.52□□□□□ -1.53
LIG1-213ENST00000596672 ATP5EP56381 51 aaPredicted RBP5.51□□□□□ -1.53
LIG1-213ENST00000596672 KLKP1Q107X0 134 aa5.51□□□□□ -1.53
LIG1-213ENST00000596672 C20orf197Q8N268 126 aa5.5□□□□□ -1.53
LIG1-213ENST00000596672 DEFB116Q30KQ4 102 aa5.49□□□□□ -1.53
LIG1-213ENST00000596672 FAM236DA0A1B0GTK5 79 aa5.48□□□□□ -1.53
LIG1-213ENST00000596672 BPY2O14599 106 aa5.48□□□□□ -1.53
LIG1-213ENST00000596672 FAM236CP0DP71 79 aa5.48□□□□□ -1.53
LIG1-213ENST00000596672 CRCT1Q9UGL9 99 aa5.48□□□□□ -1.53
LIG1-213ENST00000596672 SERP1Q9Y6X1 66 aa5.47□□□□□ -1.53
LIG1-213ENST00000596672 SSPOA2VEC9 5147 aa5.45□□□□□ -1.54
LIG1-213ENST00000596672 CYSTM1Q9H1C7 97 aa5.45□□□□□ -1.54
LIG1-213ENST00000596672 H7BZZ5 65 aa5.44□□□□□ -1.54
LIG1-213ENST00000596672 IGKV4-1P06312 121 aa5.44□□□□□ -1.54
LIG1-213ENST00000596672 Q8N9L7 120 aa5.44□□□□□ -1.54
LIG1-213ENST00000596672 Q96NJ1 140 aa5.44□□□□□ -1.54
LIG1-213ENST00000596672 LINC00472Q9H8W2 130 aa5.44□□□□□ -1.54
LIG1-213ENST00000596672 USH2AO75445 5202 aa5.44□□□□□ -1.54
LIG1-213ENST00000596672 C5orf47Q569G3 176 aa5.43□□□□□ -1.54
LIG1-213ENST00000596672 DSCR10P59022 87 aa5.42□□□□□ -1.54
LIG1-213ENST00000596672 Q75L30 129 aa5.42□□□□□ -1.54
LIG1-213ENST00000596672 KRTAP16-1A8MUX0 517 aa5.41□□□□□ -1.54
LIG1-213ENST00000596672 TMEM254Q8TBM7 123 aa5.41□□□□□ -1.54
LIG1-213ENST00000596672 OCR1Q9BZK8 76 aa5.4□□□□□ -1.54
LIG1-213ENST00000596672 SMIM26A0A096LP01 95 aa5.39□□□□□ -1.55
LIG1-213ENST00000596672 K7EQZ3 153 aa5.39□□□□□ -1.55
LIG1-213ENST00000596672 C20orf166-AS1Q96NR2 134 aa5.39□□□□□ -1.55
LIG1-213ENST00000596672 SNURFQ9Y675 71 aa5.39□□□□□ -1.55
LIG1-213ENST00000596672 A8MUU9 505 aa5.38□□□□□ -1.55
LIG1-213ENST00000596672 A8MWP4 228 aa5.37□□□□□ -1.55
LIG1-213ENST00000596672 COX6B2Q6YFQ2 88 aa5.37□□□□□ -1.55
LIG1-213ENST00000596672 NOTCH2NLQ7Z3S9 236 aa5.37□□□□□ -1.55
LIG1-213ENST00000596672 M0R2T5 61 aa5.36□□□□□ -1.55
LIG1-213ENST00000596672 NDUFB1O75438 58 aa5.36□□□□□ -1.55
LIG1-213ENST00000596672 PRR15Q8IV56 129 aa5.35□□□□□ -1.55
LIG1-213ENST00000596672 KRTAP9-8Q9BYQ0 159 aa5.35□□□□□ -1.55
LIG1-213ENST00000596672 IGHV6-1A0A0B4J1U7 121 aa5.34□□□□□ -1.55
LIG1-213ENST00000596672 ATP11AUNQ6ZP68 121 aa5.34□□□□□ -1.55
LIG1-213ENST00000596672 A0A1B0GVX0 72 aa5.33□□□□□ -1.56
LIG1-213ENST00000596672 HCG22E2RYF7 251 aa5.32□□□□□ -1.56
LIG1-213ENST00000596672 WFDC13Q8IUB5 93 aa5.32□□□□□ -1.56
LIG1-213ENST00000596672 H3BPC8 53 aa5.3□□□□□ -1.56
LIG1-213ENST00000596672 C8orf17Q9NRJ1 99 aa5.3□□□□□ -1.56
LIG1-213ENST00000596672 MMP24-AS1A0A0U1RRL7 71 aa5.29□□□□□ -1.56
LIG1-213ENST00000596672 MP68P56378 58 aa5.29□□□□□ -1.56
LIG1-213ENST00000596672 C4orf26Q17RF5 130 aa5.29□□□□□ -1.56
LIG1-213ENST00000596672 CASC2Q6XLA1 102 aa5.29□□□□□ -1.56
LIG1-213ENST00000596672 MPLKIPQ8TAP9 179 aa5.28□□□□□ -1.56
LIG1-213ENST00000596672 hDV103S1A0JD37 113 aa5.27□□□□□ -1.57
LIG1-213ENST00000596672 LCE2BO14633 110 aa5.27□□□□□ -1.57
LIG1-213ENST00000596672 ZCCHC13Q8WW36 166 aaKnown RBP5.27□□□□□ -1.57
LIG1-213ENST00000596672 HRES1P13985 223 aa5.26□□□□□ -1.57
LIG1-213ENST00000596672 LINC00313P59037 77 aa5.26□□□□□ -1.57
LIG1-213ENST00000596672 C8orf87E5RJ46 101 aa5.25□□□□□ -1.57
LIG1-213ENST00000596672 MT2AP02795 61 aa5.25□□□□□ -1.57
LIG1-213ENST00000596672 FCGBPQ9Y6R7 5405 aaPredicted RBP5.24□□□□□ -1.57
LIG1-213ENST00000596672 CYP4F30PQ9H0H9 118 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms