RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 FLG2Q5D862 2391 aaPredicted RBP7.49□□□□□ -1.21
LIG1-207ENST00000594759 ANAPC11Q9NYG5 84 aa7.47□□□□□ -1.21
LIG1-207ENST00000594759 SPRR1BP22528 89 aa7.47□□□□□ -1.21
LIG1-207ENST00000594759 CRIPTQ9P021 101 aa7.46□□□□□ -1.22
LIG1-207ENST00000594759 DMAC1Q96GE9 116 aa7.45□□□□□ -1.22
LIG1-207ENST00000594759 PLAC8Q9NZF1 115 aa7.43□□□□□ -1.22
LIG1-207ENST00000594759 A0A087X002 238 aa7.42□□□□□ -1.22
LIG1-207ENST00000594759 PKD1L1Q8TDX9 2849 aa7.41□□□□□ -1.22
LIG1-207ENST00000594759 ROMO1P60602 79 aa7.4□□□□□ -1.22
LIG1-207ENST00000594759 DMBT1Q9UGM3 2413 aaPredicted RBP7.4□□□□□ -1.22
LIG1-207ENST00000594759 IGLV7-43P04211 117 aa7.4□□□□□ -1.22
LIG1-207ENST00000594759 SPACA4Q8TDM5 124 aa7.4□□□□□ -1.23
LIG1-207ENST00000594759 KRTAP7-1Q8IUC3 87 aa7.39□□□□□ -1.23
LIG1-207ENST00000594759 Q5W150 140 aa7.39□□□□□ -1.23
LIG1-207ENST00000594759 Q8N1X5 172 aa7.39□□□□□ -1.23
LIG1-207ENST00000594759 APLNQ9ULZ1 77 aa7.39□□□□□ -1.23
LIG1-207ENST00000594759 VPS13CQ709C8 3753 aa7.39□□□□□ -1.23
LIG1-207ENST00000594759 KRTAP25-1Q3LHN0 102 aa7.38□□□□□ -1.23
LIG1-207ENST00000594759 A0A1B0GU33 70 aa7.37□□□□□ -1.23
LIG1-207ENST00000594759 NOTCH2NLQ7Z3S9 236 aa7.35□□□□□ -1.23
LIG1-207ENST00000594759 Q96NJ1 140 aa7.34□□□□□ -1.23
LIG1-207ENST00000594759 TENM2Q9NT68 2774 aa7.33□□□□□ -1.24
LIG1-207ENST00000594759 ZNF861PO60384 105 aa7.33□□□□□ -1.24
LIG1-207ENST00000594759 KRTAP1-5Q9BYS1 174 aa7.32□□□□□ -1.24
LIG1-207ENST00000594759 A0A087WTM6 91 aa7.32□□□□□ -1.24
LIG1-207ENST00000594759 WWC2-AS2Q96NR7 200 aa7.31□□□□□ -1.24
LIG1-207ENST00000594759 PSORS1C2Q9UIG4 136 aa7.28□□□□□ -1.24
LIG1-207ENST00000594759 KRTAP11-1Q8IUC1 163 aa7.26□□□□□ -1.25
LIG1-207ENST00000594759 TRRAPQ9Y4A5 3859 aa7.24□□□□□ -1.25
LIG1-207ENST00000594759 KRTAP16-1A8MUX0 517 aa7.24□□□□□ -1.25
LIG1-207ENST00000594759 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.23□□□□□ -1.25
LIG1-207ENST00000594759 A0A0D9SG42 100 aa7.22□□□□□ -1.25
LIG1-207ENST00000594759 TGP01266 2768 aa7.22□□□□□ -1.25
LIG1-207ENST00000594759 A8MUU9 505 aa7.2□□□□□ -1.26
LIG1-207ENST00000594759 NDUFAF8A1L188 74 aa7.2□□□□□ -1.26
LIG1-207ENST00000594759 SMR3BP02814 79 aaPredicted RBP7.19□□□□□ -1.26
LIG1-207ENST00000594759 A0A0A0MQY5 61 aa7.15□□□□□ -1.27
LIG1-207ENST00000594759 LINC00304Q8N9R0 145 aa7.15□□□□□ -1.27
LIG1-207ENST00000594759 ZNF469Q96JG9 3925 aaPredicted RBP7.14□□□□□ -1.27
LIG1-207ENST00000594759 PANO1I0J062 215 aa7.14□□□□□ -1.27
LIG1-207ENST00000594759 H1FX-AS1Q4G0G2 97 aa7.13□□□□□ -1.27
LIG1-207ENST00000594759 LINC00483Q53H64 154 aa7.12□□□□□ -1.27
LIG1-207ENST00000594759 TYMSOSQ8TAI1 123 aa7.11□□□□□ -1.27
LIG1-207ENST00000594759 SRRM2Q9UQ35 2752 aaKnown RBP7.07□□□□□ -1.28
LIG1-207ENST00000594759 RPL37P61927 97 aaKnown RBP7.07□□□□□ -1.28
LIG1-207ENST00000594759 ANK3Q12955 4377 aaKnown RBP7.03□□□□□ -1.28
LIG1-207ENST00000594759 Q6ZSA8 131 aa7.03□□□□□ -1.28
LIG1-207ENST00000594759 C20orf166-AS1Q96NR2 134 aa7.03□□□□□ -1.28
LIG1-207ENST00000594759 LUZP6Q538Z0 58 aa7.02□□□□□ -1.29
LIG1-207ENST00000594759 C9orf92A6NGG3 77 aa7.01□□□□□ -1.29
LIG1-207ENST00000594759 KRTAP13-1Q8IUC0 172 aa7.01□□□□□ -1.29
LIG1-207ENST00000594759 KRTAP10-2P60368 255 aa7□□□□□ -1.29
LIG1-207ENST00000594759 H0YAA0 97 aa6.98□□□□□ -1.29
LIG1-207ENST00000594759 KRTAP10-1P60331 282 aa6.93□□□□□ -1.3
LIG1-207ENST00000594759 Q6ZRN7 208 aaPredicted RBP6.92□□□□□ -1.3
LIG1-207ENST00000594759 KRTAP13-3Q3SY46 172 aa6.91□□□□□ -1.3
LIG1-207ENST00000594759 COX6B2Q6YFQ2 88 aa6.87□□□□□ -1.31
LIG1-207ENST00000594759 P0C880 135 aa6.86□□□□□ -1.31
LIG1-207ENST00000594759 C10orf95Q9H7T3 257 aa6.83□□□□□ -1.32
LIG1-207ENST00000594759 FBN3Q75N90 2809 aa6.82□□□□□ -1.32
LIG1-207ENST00000594759 COL7A1Q02388 2944 aa6.78□□□□□ -1.32
LIG1-207ENST00000594759 AKAP9Q99996 3911 aa6.74□□□□□ -1.33
LIG1-207ENST00000594759 KRTAP13-2Q52LG2 175 aa6.72□□□□□ -1.33
LIG1-207ENST00000594759 MEGF8Q7Z7M0 2845 aa6.72□□□□□ -1.33
LIG1-207ENST00000594759 CSMD3Q7Z407 3707 aa6.69□□□□□ -1.34
LIG1-207ENST00000594759 S4R3F8 94 aa6.67□□□□□ -1.34
LIG1-207ENST00000594759 J3QL48 77 aa6.66□□□□□ -1.34
LIG1-207ENST00000594759 TPRXLQ17RH7 258 aa6.63□□□□□ -1.35
LIG1-207ENST00000594759 Q5VSD8 79 aa6.6□□□□□ -1.35
LIG1-207ENST00000594759 KRTAP21-3Q3LHN1 58 aa6.52□□□□□ -1.36
LIG1-207ENST00000594759 PLAC4Q8WY50 150 aa6.52□□□□□ -1.36
LIG1-207ENST00000594759 KRTAP15-1Q3LI76 137 aa6.5□□□□□ -1.37
LIG1-207ENST00000594759 SEC61BP60468 96 aaKnown RBP6.49□□□□□ -1.37
LIG1-207ENST00000594759 R4GN34 69 aa6.49□□□□□ -1.37
LIG1-207ENST00000594759 CAMK2N1Q7Z7J9 78 aa6.48□□□□□ -1.37
LIG1-207ENST00000594759 M0QZ58 72 aa6.45□□□□□ -1.38
LIG1-207ENST00000594759 KRTAP1-4P0C5Y4 121 aa6.43□□□□□ -1.38
LIG1-207ENST00000594759 HUWE1Q7Z6Z7 4374 aaKnown RBP6.42□□□□□ -1.38
LIG1-207ENST00000594759 RPS29P62273 56 aaKnown RBP6.42□□□□□ -1.38
LIG1-207ENST00000594759 KRTAP3-1Q9BYR8 98 aa6.39□□□□□ -1.39
LIG1-207ENST00000594759 KRTAP12-2P59991 146 aa6.34□□□□□ -1.4
LIG1-207ENST00000594759 DNHD1Q96M86 4753 aa6.32□□□□□ -1.4
LIG1-207ENST00000594759 KRTAP13-4Q3LI77 160 aa6.31□□□□□ -1.4
LIG1-207ENST00000594759 KRTAP10-8P60410 259 aa6.31□□□□□ -1.4
LIG1-207ENST00000594759 KRTAP10-6P60371 365 aaPredicted RBP6.26□□□□□ -1.41
LIG1-207ENST00000594759 DNAH9Q9NYC9 4486 aa6.26□□□□□ -1.41
LIG1-207ENST00000594759 KRTAP12-1P59990 96 aa6.23□□□□□ -1.41
LIG1-207ENST00000594759 PLECQ15149 4684 aaKnown RBP6.22□□□□□ -1.41
LIG1-207ENST00000594759 DNAH10Q8IVF4 4471 aa6.2□□□□□ -1.42
LIG1-207ENST00000594759 PP632Q6XCG6 107 aa6.19□□□□□ -1.42
LIG1-207ENST00000594759 A0A1B0GVY2 172 aa6.18□□□□□ -1.42
LIG1-207ENST00000594759 ANK2Q01484 3957 aa6.18□□□□□ -1.42
LIG1-207ENST00000594759 ALMS1Q8TCU4 4167 aa6.17□□□□□ -1.42
LIG1-207ENST00000594759 XP32Q5T750 250 aa6.17□□□□□ -1.42
LIG1-207ENST00000594759 PRKDCP78527 4128 aaKnown RBP6.13□□□□□ -1.43
LIG1-207ENST00000594759 M0R2T5 61 aa6.1□□□□□ -1.43
LIG1-207ENST00000594759 DNAH11Q96DT5 4516 aa6.09□□□□□ -1.44
LIG1-207ENST00000594759 KRTAP3-2Q9BYR7 98 aa6.08□□□□□ -1.44
LIG1-207ENST00000594759 STARD9Q9P2P6 4700 aa6.08□□□□□ -1.44
LIG1-207ENST00000594759 CMYA5Q8N3K9 4069 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms