RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 IGLV7-43P04211 117 aa4.2□□□□□ -1.74
VPS53-217ENST00000575100 ROMO1P60602 79 aa4.2□□□□□ -1.74
VPS53-217ENST00000575100 C9orf116Q5BN46 136 aaPredicted RBP4.2□□□□□ -1.74
VPS53-217ENST00000575100 UNQ6190/PRO20217Q6UXQ8 127 aa4.2□□□□□ -1.74
VPS53-217ENST00000575100 Q8N814 137 aa4.2□□□□□ -1.74
VPS53-217ENST00000575100 GVQW2A0A096LPI5 108 aaPredicted RBP4.19□□□□□ -1.74
VPS53-217ENST00000575100 NDUFA1O15239 70 aa4.19□□□□□ -1.74
VPS53-217ENST00000575100 PSCAO43653 123 aa4.19□□□□□ -1.74
VPS53-217ENST00000575100 KRTAP9-3Q9BYQ3 159 aa4.19□□□□□ -1.74
VPS53-217ENST00000575100 Q6ZQT0 140 aa4.18□□□□□ -1.74
VPS53-217ENST00000575100 A0A087WYN8 130 aa4.18□□□□□ -1.74
VPS53-217ENST00000575100 A8MU10 97 aa4.18□□□□□ -1.74
VPS53-217ENST00000575100 ST20-AS1Q8NBB2 130 aa4.18□□□□□ -1.74
VPS53-217ENST00000575100 CDC42SE1Q9NRR8 79 aa4.18□□□□□ -1.74
VPS53-217ENST00000575100 C6orf48Q9UBA6 75 aa4.18□□□□□ -1.74
VPS53-217ENST00000575100 H7C2G1 150 aa4.17□□□□□ -1.74
VPS53-217ENST00000575100 Q5VV11 94 aa4.17□□□□□ -1.74
VPS53-217ENST00000575100 A0A087WTM6 91 aa4.16□□□□□ -1.74
VPS53-217ENST00000575100 hDV103S1A0JD37 113 aa4.16□□□□□ -1.74
VPS53-217ENST00000575100 HERC1Q15751 4861 aa4.16□□□□□ -1.74
VPS53-217ENST00000575100 TRBV10-3A0A0K0K1G6 114 aa4.14□□□□□ -1.75
VPS53-217ENST00000575100 A0A1B0GU33 70 aa4.14□□□□□ -1.75
VPS53-217ENST00000575100 CHKB-CPT1BH3BT56 60 aa4.14□□□□□ -1.75
VPS53-217ENST00000575100 KRTAP7-1Q8IUC3 87 aa4.14□□□□□ -1.75
VPS53-217ENST00000575100 DMBT1Q9UGM3 2413 aaPredicted RBP4.14□□□□□ -1.75
VPS53-217ENST00000575100 VPS13BQ7Z7G8 4022 aa4.14□□□□□ -1.75
VPS53-217ENST00000575100 TRBV30A0A0K0K1B3 111 aa4.13□□□□□ -1.75
VPS53-217ENST00000575100 LINC00158P58513 81 aa4.13□□□□□ -1.75
VPS53-217ENST00000575100 CNBPP62633 177 aaKnown RBP4.13□□□□□ -1.75
VPS53-217ENST00000575100 MOBPQ13875 183 aa4.13□□□□□ -1.75
VPS53-217ENST00000575100 MUSTN1Q8IVN3 82 aa4.13□□□□□ -1.75
VPS53-217ENST00000575100 ATP5EP2Q5VTU8 51 aa4.13□□□□□ -1.75
VPS53-217ENST00000575100 LINC00308Q8TCZ7 52 aa4.13□□□□□ -1.75
VPS53-217ENST00000575100 DNAH8Q96JB1 4490 aa4.12□□□□□ -1.75
VPS53-217ENST00000575100 ERC2-IT1O76042 136 aa4.12□□□□□ -1.75
VPS53-217ENST00000575100 C14orf177Q52M58 125 aa4.12□□□□□ -1.75
VPS53-217ENST00000575100 LIMD2Q9BT23 127 aa4.12□□□□□ -1.75
VPS53-217ENST00000575100 COX17Q14061 63 aa4.11□□□□□ -1.75
VPS53-217ENST00000575100 C9orf163Q8N9P6 203 aa4.11□□□□□ -1.75
VPS53-217ENST00000575100 A0A087WVE0 104 aa4.11□□□□□ -1.75
VPS53-217ENST00000575100 A0A096LNI7 61 aa4.11□□□□□ -1.75
VPS53-217ENST00000575100 Q8N9P0 234 aaPredicted RBP4.11□□□□□ -1.75
VPS53-217ENST00000575100 FAT1Q14517 4588 aa4.1□□□□□ -1.75
VPS53-217ENST00000575100 Q5VSD8 79 aa4.1□□□□□ -1.75
VPS53-217ENST00000575100 C20orf166-AS1Q96NR2 134 aa4.1□□□□□ -1.75
VPS53-217ENST00000575100 SNURFQ9Y675 71 aa4.1□□□□□ -1.75
VPS53-217ENST00000575100 MYCBP2O75592 4640 aa4.09□□□□□ -1.75
VPS53-217ENST00000575100 IGKV2-28A0A075B6P5 120 aa4.09□□□□□ -1.75
VPS53-217ENST00000575100 IGKV2-24A0A0C4DH68 120 aa4.09□□□□□ -1.75
VPS53-217ENST00000575100 IGKV2D-28P01615 120 aa4.09□□□□□ -1.75
VPS53-217ENST00000575100 BAALC-AS2P0C853 105 aa4.09□□□□□ -1.76
VPS53-217ENST00000575100 CASC2Q6XLA1 102 aa4.09□□□□□ -1.76
VPS53-217ENST00000575100 COX6CP09669 75 aa4.08□□□□□ -1.76
VPS53-217ENST00000575100 KRTAP10-1P60331 282 aa4.08□□□□□ -1.76
VPS53-217ENST00000575100 C14orf132Q9NPU4 83 aa4.08□□□□□ -1.76
VPS53-217ENST00000575100 IGKV3D-7A0A0C4DH55 119 aa4.07□□□□□ -1.76
VPS53-217ENST00000575100 A0A1W2PNN7 141 aa4.07□□□□□ -1.76
VPS53-217ENST00000575100 FLG2Q5D862 2391 aaPredicted RBP4.07□□□□□ -1.76
VPS53-217ENST00000575100 NCR3O14931 201 aa4.07□□□□□ -1.76
VPS53-217ENST00000575100 KRTAP25-1Q3LHN0 102 aa4.07□□□□□ -1.76
VPS53-217ENST00000575100 TRAV23DV6A0A075B6W5 121 aa4.06□□□□□ -1.76
VPS53-217ENST00000575100 TRBV7-4A0A0J9YYF1 115 aa4.05□□□□□ -1.76
VPS53-217ENST00000575100 HAMPP81172 84 aa4.05□□□□□ -1.76
VPS53-217ENST00000575100 SPACA4Q8TDM5 124 aa4.05□□□□□ -1.76
VPS53-217ENST00000575100 A0A087WSZ3 146 aa4.05□□□□□ -1.76
VPS53-217ENST00000575100 KRTAP29-1A8MX34 341 aaPredicted RBP4.05□□□□□ -1.76
VPS53-217ENST00000575100 KRTAP11-1Q8IUC1 163 aa4.05□□□□□ -1.76
VPS53-217ENST00000575100 LOC101927531A0A1B0GV80 90 aa4.03□□□□□ -1.76
VPS53-217ENST00000575100 C22orf24Q9Y442 160 aa4.03□□□□□ -1.76
VPS53-217ENST00000575100 SMR3BP02814 79 aaPredicted RBP4.03□□□□□ -1.76
VPS53-217ENST00000575100 SRRM2Q9UQ35 2752 aaKnown RBP4.02□□□□□ -1.77
VPS53-217ENST00000575100 IGLV6-57P01721 117 aa4.02□□□□□ -1.77
VPS53-217ENST00000575100 Q6ZSA8 131 aa4.02□□□□□ -1.77
VPS53-217ENST00000575100 TMEM254Q8TBM7 123 aa4.02□□□□□ -1.77
VPS53-217ENST00000575100 LINC00167Q96N53 147 aa4.02□□□□□ -1.77
VPS53-217ENST00000575100 MIR22HGQ0VDD5 57 aa4.02□□□□□ -1.77
VPS53-217ENST00000575100 P0C880 135 aa4.01□□□□□ -1.77
VPS53-217ENST00000575100 SMIM11BQ8TCY0 68 aa4.01□□□□□ -1.77
VPS53-217ENST00000575100 DNAL4O96015 105 aa4□□□□□ -1.77
VPS53-217ENST00000575100 PLAC8Q9NZF1 115 aa4□□□□□ -1.77
VPS53-217ENST00000575100 HMCN2Q8NDA2 5059 aa3.99□□□□□ -1.77
VPS53-217ENST00000575100 PRR15LQ9BU68 103 aa3.98□□□□□ -1.77
VPS53-217ENST00000575100 KCNQ1DNQ9H478 68 aa3.98□□□□□ -1.77
VPS53-217ENST00000575100 LINC00846Q9NV44 126 aa3.98□□□□□ -1.77
VPS53-217ENST00000575100 PKHD1L1Q86WI1 4243 aa3.98□□□□□ -1.77
VPS53-217ENST00000575100 KRTAP10-4P60372 401 aaPredicted RBP3.97□□□□□ -1.77
VPS53-217ENST00000575100 LINC00483Q53H64 154 aa3.97□□□□□ -1.77
VPS53-217ENST00000575100 FAT3Q8TDW7 4589 aa3.97□□□□□ -1.77
VPS53-217ENST00000575100 SPRR1AP35321 89 aa3.96□□□□□ -1.77
VPS53-217ENST00000575100 CSAG1Q6PB30 78 aa3.96□□□□□ -1.77
VPS53-217ENST00000575100 PSORS1C2Q9UIG4 136 aa3.96□□□□□ -1.78
VPS53-217ENST00000575100 R4GN34 69 aa3.96□□□□□ -1.78
VPS53-217ENST00000575100 PRLHP81277 87 aa3.95□□□□□ -1.78
VPS53-217ENST00000575100 ELOF1P60002 83 aaKnown RBP3.94□□□□□ -1.78
VPS53-217ENST00000575100 SPINT4Q6UDR6 99 aa3.94□□□□□ -1.78
VPS53-217ENST00000575100 Q9BRP9 147 aa3.94□□□□□ -1.78
VPS53-217ENST00000575100 LRP1Q07954 4544 aaKnown RBP3.94□□□□□ -1.78
VPS53-217ENST00000575100 COX7BP24311 80 aa3.93□□□□□ -1.78
VPS53-217ENST00000575100 Q6ZRX8 168 aa3.93□□□□□ -1.78
VPS53-217ENST00000575100 HIGD2AQ9BW72 106 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms