RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 LOC105371267A0A1B0GV96 52 aa5.65□□□□□ -1.5
VPS53-207ENST00000570510 JMJD7-PLA2G4BH0Y9G9 81 aa5.65□□□□□ -1.5
VPS53-207ENST00000570510 FAM236CP0DP71 79 aa5.65□□□□□ -1.5
VPS53-207ENST00000570510 PDE6GP18545 87 aa5.65□□□□□ -1.5
VPS53-207ENST00000570510 RBM3P98179 157 aaKnown RBP5.65□□□□□ -1.5
VPS53-207ENST00000570510 A0A087WSZ3 146 aa5.64□□□□□ -1.51
VPS53-207ENST00000570510 MT1FP04733 61 aa5.64□□□□□ -1.51
VPS53-207ENST00000570510 DSCR8Q96T75 97 aa5.64□□□□□ -1.51
VPS53-207ENST00000570510 KRTAP9-3Q9BYQ3 159 aa5.64□□□□□ -1.51
VPS53-207ENST00000570510 A0A1W2PNM2 257 aa5.63□□□□□ -1.51
VPS53-207ENST00000570510 BAALC-AS2P0C853 105 aa5.63□□□□□ -1.51
VPS53-207ENST00000570510 Q75L30 129 aa5.63□□□□□ -1.51
VPS53-207ENST00000570510 OBSCN-AS1Q96MR7 158 aa5.63□□□□□ -1.51
VPS53-207ENST00000570510 CCKP06307 115 aa5.61□□□□□ -1.51
VPS53-207ENST00000570510 KRTAP19-6Q3LI70 58 aa5.61□□□□□ -1.51
VPS53-207ENST00000570510 C9JAW5 83 aa5.6□□□□□ -1.51
VPS53-207ENST00000570510 Q96NJ1 140 aa5.59□□□□□ -1.51
VPS53-207ENST00000570510 C20orf166-AS1Q96NR2 134 aa5.59□□□□□ -1.51
VPS53-207ENST00000570510 LOC110117498A0A087WWA1 95 aa5.58□□□□□ -1.52
VPS53-207ENST00000570510 J3KT08 172 aa5.58□□□□□ -1.52
VPS53-207ENST00000570510 LINC00472Q9H8W2 130 aa5.58□□□□□ -1.52
VPS53-207ENST00000570510 C9orf118A6NHY6 69 aa5.57□□□□□ -1.52
VPS53-207ENST00000570510 H3BT86 120 aa5.56□□□□□ -1.52
VPS53-207ENST00000570510 A8MUU9 505 aa5.54□□□□□ -1.52
VPS53-207ENST00000570510 IGKV4-1P06312 121 aa5.54□□□□□ -1.52
VPS53-207ENST00000570510 LINC00313P59037 77 aa5.54□□□□□ -1.52
VPS53-207ENST00000570510 KRTAP20-1Q3LI63 56 aa5.54□□□□□ -1.52
VPS53-207ENST00000570510 Q6ZQT0 140 aa5.54□□□□□ -1.52
VPS53-207ENST00000570510 A0A1W2PPM0 123 aa5.53□□□□□ -1.52
VPS53-207ENST00000570510 C8orf87E5RJ46 101 aa5.53□□□□□ -1.52
VPS53-207ENST00000570510 RBM12B-AS1Q9P1G2 102 aa5.53□□□□□ -1.52
VPS53-207ENST00000570510 TAX1BP3O14907 124 aa5.52□□□□□ -1.53
VPS53-207ENST00000570510 BATFQ16520 125 aa5.52□□□□□ -1.53
VPS53-207ENST00000570510 SIGMAR1Q99720 223 aa5.52□□□□□ -1.53
VPS53-207ENST00000570510 NEBP20929 6669 aa5.51□□□□□ -1.53
VPS53-207ENST00000570510 NDUFB1O75438 58 aa5.5□□□□□ -1.53
VPS53-207ENST00000570510 COL5A1-AS1Q5SY13 56 aa5.5□□□□□ -1.53
VPS53-207ENST00000570510 NAA38Q9BRA0 125 aaKnown RBP5.5□□□□□ -1.53
VPS53-207ENST00000570510 VPS25Q9BRG1 176 aa5.49□□□□□ -1.53
VPS53-207ENST00000570510 A0A1B0GVX0 72 aa5.48□□□□□ -1.53
VPS53-207ENST00000570510 A0A1B0GV72 72 aa5.47□□□□□ -1.53
VPS53-207ENST00000570510 KRTAP16-1A8MUX0 517 aa5.46□□□□□ -1.54
VPS53-207ENST00000570510 A8MWP4 228 aa5.45□□□□□ -1.54
VPS53-207ENST00000570510 DSCR10P59022 87 aa5.45□□□□□ -1.54
VPS53-207ENST00000570510 NREPQ16612 68 aa5.45□□□□□ -1.54
VPS53-207ENST00000570510 C14orf132Q9NPU4 83 aa5.45□□□□□ -1.54
VPS53-207ENST00000570510 MTURNQ8N3F0 131 aa5.44□□□□□ -1.54
VPS53-207ENST00000570510 KRTAP4-8Q9BYQ9 185 aa5.44□□□□□ -1.54
VPS53-207ENST00000570510 SPCS1Q9Y6A9 102 aa5.44□□□□□ -1.54
VPS53-207ENST00000570510 IGHV6-1A0A0B4J1U7 121 aa5.43□□□□□ -1.54
VPS53-207ENST00000570510 MUC12Q9UKN1 5478 aa5.41□□□□□ -1.54
VPS53-207ENST00000570510 DEFB116Q30KQ4 102 aa5.41□□□□□ -1.54
VPS53-207ENST00000570510 Q8N9P0 234 aaPredicted RBP5.41□□□□□ -1.54
VPS53-207ENST00000570510 GTF2H5Q6ZYL4 71 aa5.4□□□□□ -1.54
VPS53-207ENST00000570510 PRR15Q8IV56 129 aa5.4□□□□□ -1.54
VPS53-207ENST00000570510 K7EP34 96 aa5.39□□□□□ -1.55
VPS53-207ENST00000570510 NOTCH2NLQ7Z3S9 236 aa5.38□□□□□ -1.55
VPS53-207ENST00000570510 IGKV3D-7A0A0C4DH55 119 aa5.37□□□□□ -1.55
VPS53-207ENST00000570510 F8W1H4 67 aa5.37□□□□□ -1.55
VPS53-207ENST00000570510 C8orf17Q9NRJ1 99 aa5.37□□□□□ -1.55
VPS53-207ENST00000570510 PRO0461Q9UI25 63 aa5.36□□□□□ -1.55
VPS53-207ENST00000570510 HRES1P13985 223 aa5.35□□□□□ -1.55
VPS53-207ENST00000570510 Q6ZVQ6 151 aa5.35□□□□□ -1.55
VPS53-207ENST00000570510 MPLKIPQ8TAP9 179 aa5.35□□□□□ -1.55
VPS53-207ENST00000570510 TMEM254Q8TBM7 123 aa5.35□□□□□ -1.55
VPS53-207ENST00000570510 ZCCHC13Q8WW36 166 aaKnown RBP5.35□□□□□ -1.55
VPS53-207ENST00000570510 BPY2O14599 106 aa5.34□□□□□ -1.55
VPS53-207ENST00000570510 UBL5Q9BZL1 73 aa5.33□□□□□ -1.56
VPS53-207ENST00000570510 hDV103S1A0JD37 113 aa5.31□□□□□ -1.56
VPS53-207ENST00000570510 MRPL34Q9BQ48 92 aaKnown RBP5.31□□□□□ -1.56
VPS53-207ENST00000570510 MMP24-AS1A0A0U1RRL7 71 aa5.3□□□□□ -1.56
VPS53-207ENST00000570510 A6NN06 94 aa5.28□□□□□ -1.56
VPS53-207ENST00000570510 K7EQZ3 153 aa5.28□□□□□ -1.56
VPS53-207ENST00000570510 SPINK7P58062 85 aa5.27□□□□□ -1.57
VPS53-207ENST00000570510 WFDC13Q8IUB5 93 aa5.27□□□□□ -1.57
VPS53-207ENST00000570510 PCP4L1A6NKN8 68 aa5.26□□□□□ -1.57
VPS53-207ENST00000570510 ACYP1P07311 99 aa5.26□□□□□ -1.57
VPS53-207ENST00000570510 KRTAP2-3P0C7H8 128 aa5.26□□□□□ -1.57
VPS53-207ENST00000570510 KRTAP2-4Q9BYR9 128 aa5.26□□□□□ -1.57
VPS53-207ENST00000570510 CXCL6P80162 114 aa5.25□□□□□ -1.57
VPS53-207ENST00000570510 FAM240AA0A1B0GVK7 77 aa5.23□□□□□ -1.57
VPS53-207ENST00000570510 ETDBQ3ZM63 59 aa5.23□□□□□ -1.57
VPS53-207ENST00000570510 CASC2Q6XLA1 102 aa5.23□□□□□ -1.57
VPS53-207ENST00000570510 SVIPQ8NHG7 77 aa5.23□□□□□ -1.57
VPS53-207ENST00000570510 MDN1Q9NU22 5596 aa5.22□□□□□ -1.57
VPS53-207ENST00000570510 KRTAP4-12Q9BQ66 201 aa5.21□□□□□ -1.58
VPS53-207ENST00000570510 HCG22E2RYF7 251 aa5.2□□□□□ -1.58
VPS53-207ENST00000570510 TP53AIP1Q9HCN2 124 aa5.2□□□□□ -1.58
VPS53-207ENST00000570510 NDUFS5O43920 106 aa5.19□□□□□ -1.58
VPS53-207ENST00000570510 KRTAP5-9P26371 169 aa5.18□□□□□ -1.58
VPS53-207ENST00000570510 ATP5EP2Q5VTU8 51 aa5.18□□□□□ -1.58
VPS53-207ENST00000570510 C7orf65Q6ZTY9 151 aa5.18□□□□□ -1.58
VPS53-207ENST00000570510 KMT2DO14686 5537 aa5.17□□□□□ -1.58
VPS53-207ENST00000570510 LCE3BQ5TA77 95 aa5.15□□□□□ -1.59
VPS53-207ENST00000570510 Q8N9L7 120 aa5.15□□□□□ -1.59
VPS53-207ENST00000570510 Q5W150 140 aa5.12□□□□□ -1.59
VPS53-207ENST00000570510 H1FX-AS1Q4G0G2 97 aa5.11□□□□□ -1.59
VPS53-207ENST00000570510 Q5VV11 94 aa5.1□□□□□ -1.59
VPS53-207ENST00000570510 IGKV2D-30A0A075B6S6 120 aa5.09□□□□□ -1.59
VPS53-207ENST00000570510 IGKV2-30P06310 120 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms