RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 AKAP13Q12802 2813 aa1.32□□□□□ -2.2
VPS13C-208ENST00000559119 CEP295Q9C0D2 2601 aa1.32□□□□□ -2.2
VPS13C-208ENST00000559119 ZNF292O60281 2723 aa1.31□□□□□ -2.2
VPS13C-208ENST00000559119 EPG5Q9HCE0 2579 aa1.31□□□□□ -2.2
VPS13C-208ENST00000559119 KMT2BQ9UMN6 2715 aaPredicted RBP1.31□□□□□ -2.2
VPS13C-208ENST00000559119 A0A087WTM6 91 aa1.31□□□□□ -2.2
VPS13C-208ENST00000559119 Q6ZSA8 131 aa1.31□□□□□ -2.2
VPS13C-208ENST00000559119 DCHS1Q96JQ0 3298 aa1.31□□□□□ -2.2
VPS13C-208ENST00000559119 ZFYVE26Q68DK2 2539 aa1.31□□□□□ -2.2
VPS13C-208ENST00000559119 DMXL2Q8TDJ6 3036 aa1.31□□□□□ -2.2
VPS13C-208ENST00000559119 ANKRD11Q6UB99 2663 aaPredicted RBP1.31□□□□□ -2.2
VPS13C-208ENST00000559119 SPEGQ15772 3267 aa1.3□□□□□ -2.2
VPS13C-208ENST00000559119 ABCA2Q9BZC7 2435 aa1.3□□□□□ -2.2
VPS13C-208ENST00000559119 CELSR3Q9NYQ7 3312 aa1.3□□□□□ -2.2
VPS13C-208ENST00000559119 SMG1Q96Q15 3661 aaKnown RBP1.3□□□□□ -2.2
VPS13C-208ENST00000559119 H0YAA0 97 aa1.3□□□□□ -2.2
VPS13C-208ENST00000559119 K7EIL1 84 aa1.3□□□□□ -2.2
VPS13C-208ENST00000559119 PRLHP81277 87 aa1.3□□□□□ -2.2
VPS13C-208ENST00000559119 DEFB113Q30KQ7 82 aa1.3□□□□□ -2.2
VPS13C-208ENST00000559119 SPTAN1Q13813 2472 aaKnown RBP1.3□□□□□ -2.2
VPS13C-208ENST00000559119 SPENQ96T58 3664 aaKnown RBP1.3□□□□□ -2.2
VPS13C-208ENST00000559119 AKAP6Q13023 2319 aa1.29□□□□□ -2.2
VPS13C-208ENST00000559119 TACC2O95359 2948 aa1.29□□□□□ -2.2
VPS13C-208ENST00000559119 HTN3P15516 51 aa1.29□□□□□ -2.2
VPS13C-208ENST00000559119 DEFB135Q30KP9 77 aa1.29□□□□□ -2.2
VPS13C-208ENST00000559119 COX6B2Q6YFQ2 88 aa1.29□□□□□ -2.2
VPS13C-208ENST00000559119 PSORS1C2Q9UIG4 136 aa1.29□□□□□ -2.2
VPS13C-208ENST00000559119 BSNQ9UPA5 3926 aa1.29□□□□□ -2.2
VPS13C-208ENST00000559119 C2CD3Q4AC94 2353 aa1.29□□□□□ -2.2
VPS13C-208ENST00000559119 ZFHX4Q86UP3 3567 aa1.29□□□□□ -2.2
VPS13C-208ENST00000559119 CSMD1Q96PZ7 3565 aa1.28□□□□□ -2.2
VPS13C-208ENST00000559119 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.28□□□□□ -2.2
VPS13C-208ENST00000559119 CREBBPQ92793 2442 aa1.28□□□□□ -2.2
VPS13C-208ENST00000559119 PTPN13Q12923 2485 aa1.28□□□□□ -2.2
VPS13C-208ENST00000559119 A0A096LNI7 61 aa1.28□□□□□ -2.2
VPS13C-208ENST00000559119 DEFB4AO15263 64 aa1.28□□□□□ -2.2
VPS13C-208ENST00000559119 H1FX-AS1Q4G0G2 97 aa1.28□□□□□ -2.2
VPS13C-208ENST00000559119 DOPEY1Q5JWR5 2465 aa1.28□□□□□ -2.2
VPS13C-208ENST00000559119 FASNP49327 2511 aaKnown RBP1.28□□□□□ -2.2
VPS13C-208ENST00000559119 MAP1AP78559 2803 aaPredicted RBP1.27□□□□□ -2.21
VPS13C-208ENST00000559119 SSBP3-AS1Q7Z2R9 100 aa1.27□□□□□ -2.21
VPS13C-208ENST00000559119 ASPMQ8IZT6 3477 aa1.27□□□□□ -2.21
VPS13C-208ENST00000559119 DCHS2Q6V1P9 2916 aa1.27□□□□□ -2.21
VPS13C-208ENST00000559119 HRNRQ86YZ3 2850 aaPredicted RBP1.27□□□□□ -2.21
VPS13C-208ENST00000559119 ZNF462Q96JM2 2506 aa1.27□□□□□ -2.21
VPS13C-208ENST00000559119 PRRC2CQ9Y520 2896 aaKnown RBP1.26□□□□□ -2.21
VPS13C-208ENST00000559119 CHD6Q8TD26 2715 aa1.26□□□□□ -2.21
VPS13C-208ENST00000559119 TPRXLQ17RH7 258 aa1.26□□□□□ -2.21
VPS13C-208ENST00000559119 LRRK2Q5S007 2527 aa1.26□□□□□ -2.21
VPS13C-208ENST00000559119 ADGRG4Q8IZF6 3080 aa1.26□□□□□ -2.21
VPS13C-208ENST00000559119 DMXL1Q9Y485 3027 aa1.26□□□□□ -2.21
VPS13C-208ENST00000559119 MYO18BQ8IUG5 2567 aa1.25□□□□□ -2.21
VPS13C-208ENST00000559119 USP9XQ93008 2570 aaPredicted RBP1.25□□□□□ -2.21
VPS13C-208ENST00000559119 NBDYA0A0U1RRE5 68 aa1.25□□□□□ -2.21
VPS13C-208ENST00000559119 RPL37P61927 97 aaKnown RBP1.25□□□□□ -2.21
VPS13C-208ENST00000559119 KRTAP21-3Q3LHN1 58 aa1.25□□□□□ -2.21
VPS13C-208ENST00000559119 CELSR1Q9NYQ6 3014 aa1.25□□□□□ -2.21
VPS13C-208ENST00000559119 AKAP9Q99996 3911 aa1.25□□□□□ -2.21
VPS13C-208ENST00000559119 FN1P02751 2386 aaKnown RBP1.25□□□□□ -2.21
VPS13C-208ENST00000559119 NBPF19A0A087WUL8 3843 aa1.24□□□□□ -2.21
VPS13C-208ENST00000559119 LAMA5O15230 3695 aa1.24□□□□□ -2.21
VPS13C-208ENST00000559119 LOC400499M0QZD8 3231 aa1.24□□□□□ -2.21
VPS13C-208ENST00000559119 SPG11Q96JI7 2443 aa1.24□□□□□ -2.21
VPS13C-208ENST00000559119 ITPR1Q14643 2758 aa1.24□□□□□ -2.21
VPS13C-208ENST00000559119 BOD1L1Q8NFC6 3051 aa1.24□□□□□ -2.21
VPS13C-208ENST00000559119 IGSF10Q6WRI0 2623 aa1.24□□□□□ -2.21
VPS13C-208ENST00000559119 LRBAP50851 2863 aa1.24□□□□□ -2.21
VPS13C-208ENST00000559119 TENM2Q9NT68 2774 aa1.24□□□□□ -2.21
VPS13C-208ENST00000559119 HELZ2Q9BYK8 2649 aaKnown RBP1.23□□□□□ -2.21
VPS13C-208ENST00000559119 CCDC168Q8NDH2 2452 aa1.23□□□□□ -2.21
VPS13C-208ENST00000559119 KRTAP5-10Q6L8G5 202 aa1.23□□□□□ -2.21
VPS13C-208ENST00000559119 SPACA4Q8TDM5 124 aa1.23□□□□□ -2.21
VPS13C-208ENST00000559119 CRIPTQ9P021 101 aa1.23□□□□□ -2.21
VPS13C-208ENST00000559119 RELNP78509 3460 aa1.23□□□□□ -2.21
VPS13C-208ENST00000559119 USP9YO00507 2555 aaPredicted RBP1.23□□□□□ -2.21
VPS13C-208ENST00000559119 ANKRD17O75179 2603 aaKnown RBP1.22□□□□□ -2.21
VPS13C-208ENST00000559119 F8P00451 2351 aa1.22□□□□□ -2.21
VPS13C-208ENST00000559119 BAHCC1Q9P281 2608 aa1.22□□□□□ -2.21
VPS13C-208ENST00000559119 CELSR2Q9HCU4 2923 aa1.22□□□□□ -2.21
VPS13C-208ENST00000559119 DNAH1Q9P2D7 4330 aa1.22□□□□□ -2.21
VPS13C-208ENST00000559119 SPINK1P00995 79 aa1.22□□□□□ -2.21
VPS13C-208ENST00000559119 SPINK6Q6UWN8 80 aa1.22□□□□□ -2.21
VPS13C-208ENST00000559119 MYO9AB2RTY4 2548 aa1.22□□□□□ -2.21
VPS13C-208ENST00000559119 NAV2Q8IVL1 2488 aa1.22□□□□□ -2.21
VPS13C-208ENST00000559119 ABCA12Q86UK0 2595 aa1.21□□□□□ -2.22
VPS13C-208ENST00000559119 CSPG4Q6UVK1 2322 aa1.21□□□□□ -2.22
VPS13C-208ENST00000559119 TLN2Q9Y4G6 2542 aa1.21□□□□□ -2.22
VPS13C-208ENST00000559119 OTOGQ6ZRI0 2925 aa1.21□□□□□ -2.22
VPS13C-208ENST00000559119 SONP18583 2426 aaKnown RBP1.21□□□□□ -2.22
VPS13C-208ENST00000559119 ASH1LQ9NR48 2969 aaKnown RBP1.21□□□□□ -2.22
VPS13C-208ENST00000559119 POLQO75417 2590 aa1.21□□□□□ -2.22
VPS13C-208ENST00000559119 COL12A1Q99715 3063 aa1.21□□□□□ -2.22
VPS13C-208ENST00000559119 SETXQ7Z333 2677 aaKnown RBP1.21□□□□□ -2.22
VPS13C-208ENST00000559119 HECTD1Q9ULT8 2610 aa1.2□□□□□ -2.22
VPS13C-208ENST00000559119 SVEP1Q4LDE5 3571 aa1.2□□□□□ -2.22
VPS13C-208ENST00000559119 ACANP16112 2415 aa1.2□□□□□ -2.22
VPS13C-208ENST00000559119 ATMQ13315 3056 aa1.2□□□□□ -2.22
VPS13C-208ENST00000559119 CFAP46Q8IYW2 2715 aa1.2□□□□□ -2.22
VPS13C-208ENST00000559119 MUC16Q8WXI7 14507 aa1.2□□□□□ -2.22
VPS13C-208ENST00000559119 UNC79Q9P2D8 2635 aa1.19□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms