RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 CCNB3Q8WWL7 1395 aa-2.41□□□□□ -2.8
VPS13C-205ENST00000558088 DOT1LQ8TEK3 1739 aa-2.42□□□□□ -2.8
VPS13C-205ENST00000558088 NEXMIFQ5QGS0 1516 aa-2.42□□□□□ -2.8
VPS13C-205ENST00000558088 LTN1O94822 1766 aa-2.43□□□□□ -2.8
VPS13C-205ENST00000558088 LINC00587B1AMM8 73 aa-2.43□□□□□ -2.8
VPS13C-205ENST00000558088 TOGARAM1Q9Y4F4 1720 aa-2.43□□□□□ -2.8
VPS13C-205ENST00000558088 ATP10BO94823 1461 aa-2.44□□□□□ -2.8
VPS13C-205ENST00000558088 NCOA2Q15596 1464 aa-2.44□□□□□ -2.8
VPS13C-205ENST00000558088 CEBPZOSA8MTT3 80 aa-2.44□□□□□ -2.8
VPS13C-205ENST00000558088 EPRSP07814 1512 aaKnown RBP-2.44□□□□□ -2.8
VPS13C-205ENST00000558088 CRYBG3Q68DQ2 2970 aa-2.45□□□□□ -2.8
VPS13C-205ENST00000558088 RPS29P62273 56 aaKnown RBP-2.45□□□□□ -2.8
VPS13C-205ENST00000558088 ZFYVE16Q7Z3T8 1539 aa-2.46□□□□□ -2.8
VPS13C-205ENST00000558088 MYO15AQ9UKN7 3530 aa-2.46□□□□□ -2.8
VPS13C-205ENST00000558088 UNC13AQ9UPW8 1703 aa-2.46□□□□□ -2.8
VPS13C-205ENST00000558088 NOP10Q9NPE3 64 aaKnown RBP-2.47□□□□□ -2.8
VPS13C-205ENST00000558088 FANCAO15360 1455 aa-2.47□□□□□ -2.81
VPS13C-205ENST00000558088 CENPEQ02224 2701 aa-2.48□□□□□ -2.81
VPS13C-205ENST00000558088 CFAP54Q96N23 3096 aa-2.48□□□□□ -2.81
VPS13C-205ENST00000558088 PARP4Q9UKK3 1724 aaKnown RBP-2.48□□□□□ -2.81
VPS13C-205ENST00000558088 MRPL33O75394 65 aaKnown RBP-2.48□□□□□ -2.81
VPS13C-205ENST00000558088 MT1FP04733 61 aa-2.48□□□□□ -2.81
VPS13C-205ENST00000558088 BVES-AS1Q5T3Y7 98 aa-2.48□□□□□ -2.81
VPS13C-205ENST00000558088 C20orf78Q9BR46 151 aa-2.48□□□□□ -2.81
VPS13C-205ENST00000558088 GYPAP02724 150 aa-2.49□□□□□ -2.81
VPS13C-205ENST00000558088 MINOS1Q5TGZ0 78 aa-2.49□□□□□ -2.81
VPS13C-205ENST00000558088 DDX60LQ5H9U9 1706 aaKnown RBP-2.49□□□□□ -2.81
VPS13C-205ENST00000558088 DMDP11532 3685 aa-2.49□□□□□ -2.81
VPS13C-205ENST00000558088 DEFB131BA0A096LNP1 70 aa-2.5□□□□□ -2.81
VPS13C-205ENST00000558088 SPEGQ15772 3267 aa-2.5□□□□□ -2.81
VPS13C-205ENST00000558088 H3BUA1 57 aa-2.51□□□□□ -2.81
VPS13C-205ENST00000558088 DIP2BQ9P265 1576 aa-2.53□□□□□ -2.81
VPS13C-205ENST00000558088 RPS27P42677 84 aaKnown RBP-2.53□□□□□ -2.81
VPS13C-205ENST00000558088 RBP2P50120 134 aa-2.53□□□□□ -2.81
VPS13C-205ENST00000558088 CRIP1P50238 77 aa-2.53□□□□□ -2.81
VPS13C-205ENST00000558088 NREPQ16612 68 aa-2.53□□□□□ -2.81
VPS13C-205ENST00000558088 RPS27LQ71UM5 84 aaKnown RBP-2.53□□□□□ -2.81
VPS13C-205ENST00000558088 URB2Q14146 1524 aaKnown RBP-2.53□□□□□ -2.81
VPS13C-205ENST00000558088 ITSN2Q9NZM3 1697 aa-2.53□□□□□ -2.82
VPS13C-205ENST00000558088 SFTA3P0C7M3 94 aa-2.54□□□□□ -2.82
VPS13C-205ENST00000558088 SPART-AS1P0CW21 52 aa-2.54□□□□□ -2.82
VPS13C-205ENST00000558088 NCMAPQ5T1S8 102 aa-2.54□□□□□ -2.82
VPS13C-205ENST00000558088 RABAC1Q9UI14 185 aa-2.54□□□□□ -2.82
VPS13C-205ENST00000558088 KIAA0586Q9BVV6 1533 aa-2.54□□□□□ -2.82
VPS13C-205ENST00000558088 THOC2Q8NI27 1593 aaKnown RBP-2.54□□□□□ -2.82
VPS13C-205ENST00000558088 LY75O60449 1722 aa-2.55□□□□□ -2.82
VPS13C-205ENST00000558088 FCER1GP30273 86 aa-2.55□□□□□ -2.82
VPS13C-205ENST00000558088 SNRPFP62306 86 aaKnown RBP-2.55□□□□□ -2.82
VPS13C-205ENST00000558088 LINC00643Q86TS7 51 aa-2.55□□□□□ -2.82
VPS13C-205ENST00000558088 MAST1Q9Y2H9 1570 aa-2.55□□□□□ -2.82
VPS13C-205ENST00000558088 ATP6V1G2-DDX39BF2Z307 99 aa-2.56□□□□□ -2.82
VPS13C-205ENST00000558088 C14orf144Q96I85 54 aa-2.56□□□□□ -2.82
VPS13C-205ENST00000558088 TCEAL7Q9BRU2 100 aa-2.57□□□□□ -2.82
VPS13C-205ENST00000558088 ARFGEF2Q9Y6D5 1785 aa-2.58□□□□□ -2.82
VPS13C-205ENST00000558088 A0A087WXM4 84 aa-2.58□□□□□ -2.82
VPS13C-205ENST00000558088 CCDC88BA6NC98 1476 aa-2.58□□□□□ -2.82
VPS13C-205ENST00000558088 CNTLNQ9NXG0 1405 aa-2.59□□□□□ -2.82
VPS13C-205ENST00000558088 MYO3AQ8NEV4 1616 aa-2.59□□□□□ -2.82
VPS13C-205ENST00000558088 WDFY3Q8IZQ1 3526 aa-2.59□□□□□ -2.82
VPS13C-205ENST00000558088 A8MTW9 85 aa-2.59□□□□□ -2.82
VPS13C-205ENST00000558088 UBL5Q9BZL1 73 aa-2.59□□□□□ -2.82
VPS13C-205ENST00000558088 ITSN1Q15811 1721 aa-2.59□□□□□ -2.82
VPS13C-205ENST00000558088 CEP350Q5VT06 3117 aa-2.59□□□□□ -2.82
VPS13C-205ENST00000558088 KIF1AQ12756 1690 aa-2.6□□□□□ -2.82
VPS13C-205ENST00000558088 TMEM131LA2VDJ0 1609 aa-2.6□□□□□ -2.83
VPS13C-205ENST00000558088 M0QY20 66 aa-2.61□□□□□ -2.83
VPS13C-205ENST00000558088 M0R143 59 aa-2.61□□□□□ -2.83
VPS13C-205ENST00000558088 DEFB136Q30KP8 78 aa-2.61□□□□□ -2.83
VPS13C-205ENST00000558088 C6orf48Q9UBA6 75 aa-2.61□□□□□ -2.83
VPS13C-205ENST00000558088 PLCH1Q4KWH8 1693 aa-2.61□□□□□ -2.83
VPS13C-205ENST00000558088 ZC3H13Q5T200 1668 aaKnown RBP-2.61□□□□□ -2.83
VPS13C-205ENST00000558088 UBR1Q8IWV7 1749 aa-2.62□□□□□ -2.83
VPS13C-205ENST00000558088 PVALEFA0A1B0GWK0 134 aa-2.62□□□□□ -2.83
VPS13C-205ENST00000558088 M0QZ58 72 aa-2.62□□□□□ -2.83
VPS13C-205ENST00000558088 NCBP2-AS2Q69YL0 99 aa-2.62□□□□□ -2.83
VPS13C-205ENST00000558088 S100A16Q96FQ6 103 aaKnown RBP-2.62□□□□□ -2.83
VPS13C-205ENST00000558088 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-2.63□□□□□ -2.83
VPS13C-205ENST00000558088 VPS13CQ709C8 3753 aa-2.64□□□□□ -2.83
VPS13C-205ENST00000558088 SMARCA2P51531 1590 aa-2.65□□□□□ -2.83
VPS13C-205ENST00000558088 HFM1A2PYH4 1435 aa-2.65□□□□□ -2.83
VPS13C-205ENST00000558088 HMGA1P17096 107 aaKnown RBP-2.65□□□□□ -2.83
VPS13C-205ENST00000558088 PYY3Q5JQD4 70 aa-2.65□□□□□ -2.83
VPS13C-205ENST00000558088 KCNQ1DNQ9H478 68 aa-2.66□□□□□ -2.84
VPS13C-205ENST00000558088 CEP162Q5TB80 1403 aa-2.67□□□□□ -2.84
VPS13C-205ENST00000558088 CEP250Q9BV73 2442 aa-2.67□□□□□ -2.84
VPS13C-205ENST00000558088 ARHGAP35Q9NRY4 1499 aa-2.67□□□□□ -2.84
VPS13C-205ENST00000558088 PIK3C2BO00750 1634 aa-2.68□□□□□ -2.84
VPS13C-205ENST00000558088 A0A1B0GUL6 1792 aa-2.68□□□□□ -2.84
VPS13C-205ENST00000558088 SMIM13P0DJ93 91 aa-2.68□□□□□ -2.84
VPS13C-205ENST00000558088 ATP5EP2Q5VTU8 51 aa-2.68□□□□□ -2.84
VPS13C-205ENST00000558088 LRRIQ1Q96JM4 1722 aa-2.68□□□□□ -2.84
VPS13C-205ENST00000558088 RICTORQ6R327 1708 aa-2.69□□□□□ -2.84
VPS13C-205ENST00000558088 NRAPQ86VF7 1730 aa-2.69□□□□□ -2.84
VPS13C-205ENST00000558088 KANTRA0A1W2PQU2 76 aa-2.7□□□□□ -2.84
VPS13C-205ENST00000558088 TJP1Q07157 1748 aa-2.71□□□□□ -2.84
VPS13C-205ENST00000558088 ETDCA0A1B0GVM5 59 aa-2.71□□□□□ -2.84
VPS13C-205ENST00000558088 SNHG12Q9BXW3 62 aa-2.71□□□□□ -2.84
VPS13C-205ENST00000558088 Q9H521 79 aa-2.71□□□□□ -2.84
VPS13C-205ENST00000558088 RALGAPBQ86X10 1494 aa-2.71□□□□□ -2.84
VPS13C-205ENST00000558088 RNF17Q9BXT8 1623 aaKnown RBP-2.72□□□□□ -2.85
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms