RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 CELSR1Q9NYQ6 3014 aa0.56□□□□□ -2.32
SCFD1-211ENST00000554437 DEFB131AP59861 70 aa0.56□□□□□ -2.32
SCFD1-211ENST00000554437 STAB1Q9NY15 2570 aa0.56□□□□□ -2.32
SCFD1-211ENST00000554437 KMT2CQ8NEZ4 4911 aaKnown RBP0.56□□□□□ -2.32
SCFD1-211ENST00000554437 TNRC18O15417 2968 aaPredicted RBP0.55□□□□□ -2.32
SCFD1-211ENST00000554437 UBR5O95071 2799 aaPredicted RBP0.55□□□□□ -2.32
SCFD1-211ENST00000554437 SAMD9LQ8IVG5 1584 aa0.54□□□□□ -2.32
SCFD1-211ENST00000554437 NAV2Q8IVL1 2488 aa0.54□□□□□ -2.32
SCFD1-211ENST00000554437 RYR1P21817 5038 aa0.54□□□□□ -2.32
SCFD1-211ENST00000554437 H3BNG1 76 aa0.54□□□□□ -2.32
SCFD1-211ENST00000554437 NCOR2Q9Y618 2525 aa0.54□□□□□ -2.32
SCFD1-211ENST00000554437 SETXQ7Z333 2677 aaKnown RBP0.53□□□□□ -2.32
SCFD1-211ENST00000554437 MMP24-AS1A0A0U1RRL7 71 aa0.53□□□□□ -2.32
SCFD1-211ENST00000554437 SSPOA2VEC9 5147 aa0.53□□□□□ -2.32
SCFD1-211ENST00000554437 HIVEP3Q5T1R4 2406 aa0.53□□□□□ -2.33
SCFD1-211ENST00000554437 ANKHD1Q8IWZ3 2542 aaKnown RBP0.53□□□□□ -2.33
SCFD1-211ENST00000554437 CREBBPQ92793 2442 aa0.52□□□□□ -2.33
SCFD1-211ENST00000554437 M0QY20 66 aa0.52□□□□□ -2.33
SCFD1-211ENST00000554437 SPRR2BP35325 72 aa0.52□□□□□ -2.33
SCFD1-211ENST00000554437 RYR2Q92736 4967 aa0.52□□□□□ -2.33
SCFD1-211ENST00000554437 PHGR1C9JFL3 82 aa0.51□□□□□ -2.33
SCFD1-211ENST00000554437 CLTCL1P53675 1640 aa0.5□□□□□ -2.33
SCFD1-211ENST00000554437 KMT2AQ03164 3969 aa0.5□□□□□ -2.33
SCFD1-211ENST00000554437 MYCBP2O75592 4640 aa0.5□□□□□ -2.33
SCFD1-211ENST00000554437 HRNRQ86YZ3 2850 aaPredicted RBP0.5□□□□□ -2.33
SCFD1-211ENST00000554437 SPTBN4Q9H254 2564 aa0.5□□□□□ -2.33
SCFD1-211ENST00000554437 CEP290O15078 2479 aa0.49□□□□□ -2.33
SCFD1-211ENST00000554437 ACANP16112 2415 aa0.49□□□□□ -2.33
SCFD1-211ENST00000554437 LPAP08519 4548 aa0.49□□□□□ -2.33
SCFD1-211ENST00000554437 LYSTQ99698 3801 aa0.49□□□□□ -2.33
SCFD1-211ENST00000554437 MAP1BP46821 2468 aaKnown RBP0.49□□□□□ -2.33
SCFD1-211ENST00000554437 TEP1Q99973 2627 aaKnown RBP0.48□□□□□ -2.33
SCFD1-211ENST00000554437 A8MTW9 85 aa0.48□□□□□ -2.33
SCFD1-211ENST00000554437 KRTAP20-1Q3LI63 56 aa0.48□□□□□ -2.33
SCFD1-211ENST00000554437 FAT4Q6V0I7 4981 aa0.47□□□□□ -2.33
SCFD1-211ENST00000554437 RNF213Q63HN8 5207 aa0.47□□□□□ -2.33
SCFD1-211ENST00000554437 NSD1Q96L73 2696 aaPredicted RBP0.46□□□□□ -2.34
SCFD1-211ENST00000554437 WNK1Q9H4A3 2382 aa0.46□□□□□ -2.34
SCFD1-211ENST00000554437 APC2O95996 2303 aa0.46□□□□□ -2.34
SCFD1-211ENST00000554437 COL6A5A8TX70 2615 aa0.45□□□□□ -2.34
SCFD1-211ENST00000554437 IGSF10Q6WRI0 2623 aa0.45□□□□□ -2.34
SCFD1-211ENST00000554437 NBASA2RRP1 2371 aa0.43□□□□□ -2.34
SCFD1-211ENST00000554437 M0QZ58 72 aa0.43□□□□□ -2.34
SCFD1-211ENST00000554437 TNP1P09430 55 aa0.43□□□□□ -2.34
SCFD1-211ENST00000554437 NF1P21359 2839 aa0.42□□□□□ -2.34
SCFD1-211ENST00000554437 FLNBO75369 2602 aaKnown RBP0.41□□□□□ -2.34
SCFD1-211ENST00000554437 DEFB110Q30KQ9 67 aa0.41□□□□□ -2.34
SCFD1-211ENST00000554437 ABCA13Q86UQ4 5058 aa0.41□□□□□ -2.34
SCFD1-211ENST00000554437 SONP18583 2426 aaKnown RBP0.4□□□□□ -2.34
SCFD1-211ENST00000554437 VPS13BQ7Z7G8 4022 aa0.4□□□□□ -2.35
SCFD1-211ENST00000554437 SPRR2AP35326 72 aa0.39□□□□□ -2.35
SCFD1-211ENST00000554437 MAST4O15021 2626 aa0.39□□□□□ -2.35
SCFD1-211ENST00000554437 PDZD2O15018 2839 aa0.39□□□□□ -2.35
SCFD1-211ENST00000554437 SETD2Q9BYW2 2564 aaPredicted RBP0.39□□□□□ -2.35
SCFD1-211ENST00000554437 SRRM2Q9UQ35 2752 aaKnown RBP0.39□□□□□ -2.35
SCFD1-211ENST00000554437 HERC1Q15751 4861 aa0.38□□□□□ -2.35
SCFD1-211ENST00000554437 DCHS2Q6V1P9 2916 aa0.38□□□□□ -2.35
SCFD1-211ENST00000554437 HSPG2P98160 4391 aa0.38□□□□□ -2.35
SCFD1-211ENST00000554437 A0A0C4DFX4 3053 aa0.38□□□□□ -2.35
SCFD1-211ENST00000554437 HYDINQ4G0P3 5121 aa0.37□□□□□ -2.35
SCFD1-211ENST00000554437 POLR2KP53803 58 aaKnown RBP0.37□□□□□ -2.35
SCFD1-211ENST00000554437 KRTAP6-2Q3LI66 62 aa0.37□□□□□ -2.35
SCFD1-211ENST00000554437 COL7A1Q02388 2944 aa0.37□□□□□ -2.35
SCFD1-211ENST00000554437 HECTD4Q9Y4D8 3996 aa0.37□□□□□ -2.35
SCFD1-211ENST00000554437 WDFY4Q6ZS81 3184 aa0.37□□□□□ -2.35
SCFD1-211ENST00000554437 GCN1Q92616 2671 aaKnown RBP0.36□□□□□ -2.35
SCFD1-211ENST00000554437 USP9XQ93008 2570 aaPredicted RBP0.36□□□□□ -2.35
SCFD1-211ENST00000554437 SNRPGP62308 76 aaKnown RBP0.36□□□□□ -2.35
SCFD1-211ENST00000554437 SRCAPQ6ZRS2 3230 aa0.36□□□□□ -2.35
SCFD1-211ENST00000554437 FLNAP21333 2647 aaKnown RBP0.36□□□□□ -2.35
SCFD1-211ENST00000554437 EPPK1P58107 5090 aaKnown RBP0.36□□□□□ -2.35
SCFD1-211ENST00000554437 FLNCQ14315 2725 aa0.36□□□□□ -2.35
SCFD1-211ENST00000554437 HMCN2Q8NDA2 5059 aa0.35□□□□□ -2.35
SCFD1-211ENST00000554437 PCNTO95613 3336 aa0.35□□□□□ -2.35
SCFD1-211ENST00000554437 DOPEY1Q5JWR5 2465 aa0.35□□□□□ -2.35
SCFD1-211ENST00000554437 CCDC168Q8NDH2 2452 aa0.35□□□□□ -2.35
SCFD1-211ENST00000554437 PKD1P98161 4303 aa0.35□□□□□ -2.35
SCFD1-211ENST00000554437 HIVEP1P15822 2718 aa0.35□□□□□ -2.35
SCFD1-211ENST00000554437 DMXL1Q9Y485 3027 aa0.35□□□□□ -2.35
SCFD1-211ENST00000554437 LRRK2Q5S007 2527 aa0.34□□□□□ -2.35
SCFD1-211ENST00000554437 CLPSL2Q6UWE3 100 aa0.34□□□□□ -2.36
SCFD1-211ENST00000554437 ZZEF1O43149 2961 aa0.34□□□□□ -2.36
SCFD1-211ENST00000554437 CUBNO60494 3623 aa0.34□□□□□ -2.36
SCFD1-211ENST00000554437 RYR3Q15413 4870 aa0.34□□□□□ -2.36
SCFD1-211ENST00000554437 ANKRD11Q6UB99 2663 aaPredicted RBP0.33□□□□□ -2.36
SCFD1-211ENST00000554437 FASNP49327 2511 aaKnown RBP0.33□□□□□ -2.36
SCFD1-211ENST00000554437 MYO18BQ8IUG5 2567 aa0.33□□□□□ -2.36
SCFD1-211ENST00000554437 SACSQ9NZJ4 4579 aa0.33□□□□□ -2.36
SCFD1-211ENST00000554437 USP9YO00507 2555 aaPredicted RBP0.33□□□□□ -2.36
SCFD1-211ENST00000554437 STAB2Q8WWQ8 2551 aa0.33□□□□□ -2.36
SCFD1-211ENST00000554437 ITPR3Q14573 2671 aa0.32□□□□□ -2.36
SCFD1-211ENST00000554437 DMBT1Q9UGM3 2413 aaPredicted RBP0.32□□□□□ -2.36
SCFD1-211ENST00000554437 MT1AP04731 61 aa0.32□□□□□ -2.36
SCFD1-211ENST00000554437 MTORP42345 2549 aa0.32□□□□□ -2.36
SCFD1-211ENST00000554437 ZFHX4Q86UP3 3567 aa0.32□□□□□ -2.36
SCFD1-211ENST00000554437 CSMD1Q96PZ7 3565 aa0.32□□□□□ -2.36
SCFD1-211ENST00000554437 CELSR3Q9NYQ7 3312 aa0.31□□□□□ -2.36
SCFD1-211ENST00000554437 TACC2O95359 2948 aa0.31□□□□□ -2.36
SCFD1-211ENST00000554437 EPG5Q9HCE0 2579 aa0.3□□□□□ -2.36
SCFD1-211ENST00000554437 SZT2Q5T011 3432 aa0.3□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms