RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 C4orf3Q8WVX3 66 aa0.94□□□□□ -2.26
VRK1-202ENST00000553683 CNFNQ9BYD5 112 aa0.94□□□□□ -2.26
VRK1-202ENST00000553683 CCL26Q9Y258 94 aa0.94□□□□□ -2.26
VRK1-202ENST00000553683 CR1P17927 2039 aa0.94□□□□□ -2.26
VRK1-202ENST00000553683 SCN3AQ9NY46 2000 aa0.94□□□□□ -2.26
VRK1-202ENST00000553683 CSMD3Q7Z407 3707 aa0.94□□□□□ -2.26
VRK1-202ENST00000553683 SPTBP11277 2137 aa0.94□□□□□ -2.26
VRK1-202ENST00000553683 DMBT1Q9UGM3 2413 aaPredicted RBP0.94□□□□□ -2.26
VRK1-202ENST00000553683 DNAH1Q9P2D7 4330 aa0.93□□□□□ -2.26
VRK1-202ENST00000553683 FLG2Q5D862 2391 aaPredicted RBP0.93□□□□□ -2.26
VRK1-202ENST00000553683 DNAJC13O75165 2243 aa0.93□□□□□ -2.26
VRK1-202ENST00000553683 DYNC2H1Q8NCM8 4307 aaKnown RBP0.93□□□□□ -2.26
VRK1-202ENST00000553683 FRAS1Q86XX4 4008 aa0.93□□□□□ -2.26
VRK1-202ENST00000553683 TRGV2A0A075B6R0 118 aa0.93□□□□□ -2.26
VRK1-202ENST00000553683 TRGV1A0A0A0MS02 117 aa0.93□□□□□ -2.26
VRK1-202ENST00000553683 A0A0G2JQZ4 141 aa0.93□□□□□ -2.26
VRK1-202ENST00000553683 IAPPP10997 89 aa0.93□□□□□ -2.26
VRK1-202ENST00000553683 CRIP1P50238 77 aa0.93□□□□□ -2.26
VRK1-202ENST00000553683 RPL38P63173 70 aaKnown RBP0.93□□□□□ -2.26
VRK1-202ENST00000553683 HAMPP81172 84 aa0.93□□□□□ -2.26
VRK1-202ENST00000553683 LINC01590Q5TEZ4 76 aa0.93□□□□□ -2.26
VRK1-202ENST00000553683 C5orf56Q8N8D9 126 aa0.93□□□□□ -2.26
VRK1-202ENST00000553683 ARHGAP5-AS1Q96IT6 56 aa0.93□□□□□ -2.26
VRK1-202ENST00000553683 LYSTQ99698 3801 aa0.93□□□□□ -2.26
VRK1-202ENST00000553683 MYO7AQ13402 2215 aa0.93□□□□□ -2.26
VRK1-202ENST00000553683 SPAG17Q6Q759 2223 aa0.93□□□□□ -2.26
VRK1-202ENST00000553683 NCOA6Q14686 2063 aaPredicted RBP0.93□□□□□ -2.26
VRK1-202ENST00000553683 KMT2AQ03164 3969 aa0.93□□□□□ -2.26
VRK1-202ENST00000553683 ABCA4P78363 2273 aa0.92□□□□□ -2.26
VRK1-202ENST00000553683 ESPL1Q14674 2120 aa0.92□□□□□ -2.26
VRK1-202ENST00000553683 LAMA4Q16363 1823 aa0.92□□□□□ -2.26
VRK1-202ENST00000553683 SSPOA2VEC9 5147 aa0.92□□□□□ -2.26
VRK1-202ENST00000553683 ARFGEF3Q5TH69 2177 aa0.92□□□□□ -2.26
VRK1-202ENST00000553683 MED12Q93074 2177 aa0.92□□□□□ -2.26
VRK1-202ENST00000553683 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.92□□□□□ -2.26
VRK1-202ENST00000553683 CPSF4LA6NMK7 179 aaKnown RBP0.92□□□□□ -2.26
VRK1-202ENST00000553683 COX7BP24311 80 aa0.92□□□□□ -2.26
VRK1-202ENST00000553683 LINC00308Q8TCZ7 52 aa0.92□□□□□ -2.26
VRK1-202ENST00000553683 TNRC6BQ9UPQ9 1833 aaKnown RBP0.92□□□□□ -2.26
VRK1-202ENST00000553683 M0R2N4 97 aa0.91□□□□□ -2.26
VRK1-202ENST00000553683 FXYD4P59646 89 aa0.91□□□□□ -2.26
VRK1-202ENST00000553683 RPL37AP61513 92 aaKnown RBP0.91□□□□□ -2.26
VRK1-202ENST00000553683 COX17Q14061 63 aa0.91□□□□□ -2.26
VRK1-202ENST00000553683 SMIM2Q9BVW6 85 aa0.91□□□□□ -2.26
VRK1-202ENST00000553683 ARHGAP32A7KAX9 2087 aa0.91□□□□□ -2.26
VRK1-202ENST00000553683 COL4A2P08572 1712 aa0.91□□□□□ -2.26
VRK1-202ENST00000553683 HMCN2Q8NDA2 5059 aa0.91□□□□□ -2.26
VRK1-202ENST00000553683 GOLGA4Q13439 2230 aaKnown RBP0.91□□□□□ -2.26
VRK1-202ENST00000553683 MDC1Q14676 2089 aaKnown RBP0.9□□□□□ -2.26
VRK1-202ENST00000553683 AHNAK2Q8IVF2 5795 aa0.9□□□□□ -2.26
VRK1-202ENST00000553683 AHNAKQ09666 5890 aaKnown RBP0.9□□□□□ -2.26
VRK1-202ENST00000553683 DEFB131BA0A096LNP1 70 aa0.9□□□□□ -2.27
VRK1-202ENST00000553683 A0A1B0GU69 56 aa0.9□□□□□ -2.27
VRK1-202ENST00000553683 NDUFA1O15239 70 aa0.9□□□□□ -2.27
VRK1-202ENST00000553683 LINC00158P58513 81 aa0.9□□□□□ -2.27
VRK1-202ENST00000553683 DEFB119Q8N690 84 aa0.9□□□□□ -2.27
VRK1-202ENST00000553683 SMIM11BQ8TCY0 68 aa0.9□□□□□ -2.27
VRK1-202ENST00000553683 SMR3AQ99954 134 aa0.9□□□□□ -2.27
VRK1-202ENST00000553683 TTTY10Q9BZA0 68 aa0.9□□□□□ -2.27
VRK1-202ENST00000553683 AKAP6Q13023 2319 aa0.9□□□□□ -2.27
VRK1-202ENST00000553683 ASCC3Q8N3C0 2202 aaKnown RBP0.89□□□□□ -2.27
VRK1-202ENST00000553683 FREM1Q5H8C1 2179 aa0.89□□□□□ -2.27
VRK1-202ENST00000553683 G3V318 75 aa0.89□□□□□ -2.27
VRK1-202ENST00000553683 H3BRN7 92 aa0.89□□□□□ -2.27
VRK1-202ENST00000553683 INE1O15225 51 aa0.89□□□□□ -2.27
VRK1-202ENST00000553683 LY6G6CO95867 125 aa0.89□□□□□ -2.27
VRK1-202ENST00000553683 C10orf55Q5SWW7 151 aa0.89□□□□□ -2.27
VRK1-202ENST00000553683 CCL19Q99731 98 aa0.89□□□□□ -2.27
VRK1-202ENST00000553683 UNC13CQ8NB66 2214 aa0.88□□□□□ -2.27
VRK1-202ENST00000553683 PKHD1P08F94 4074 aa0.88□□□□□ -2.27
VRK1-202ENST00000553683 A0A096LNT2 108 aa0.88□□□□□ -2.27
VRK1-202ENST00000553683 POLR2KP53803 58 aaKnown RBP0.88□□□□□ -2.27
VRK1-202ENST00000553683 Q8IZM0 81 aa0.88□□□□□ -2.27
VRK1-202ENST00000553683 CDKN2A-AS1Q9UH64 79 aa0.88□□□□□ -2.27
VRK1-202ENST00000553683 CADP27708 2225 aa0.88□□□□□ -2.27
VRK1-202ENST00000553683 DNAH7Q8WXX0 4024 aa0.87□□□□□ -2.27
VRK1-202ENST00000553683 ACYP2P14621 99 aa0.87□□□□□ -2.27
VRK1-202ENST00000553683 KRTAP20-1Q3LI63 56 aa0.87□□□□□ -2.27
VRK1-202ENST00000553683 LINC00575Q6W349 94 aa0.87□□□□□ -2.27
VRK1-202ENST00000553683 Q6ZQY7 126 aa0.87□□□□□ -2.27
VRK1-202ENST00000553683 SSBP3-AS1Q7Z2R9 100 aa0.87□□□□□ -2.27
VRK1-202ENST00000553683 RP1P56715 2156 aa0.87□□□□□ -2.27
VRK1-202ENST00000553683 PLXNB2O15031 1838 aa0.87□□□□□ -2.27
VRK1-202ENST00000553683 TNCP24821 2201 aa0.87□□□□□ -2.27
VRK1-202ENST00000553683 GVQW2A0A096LPI5 108 aaPredicted RBP0.86□□□□□ -2.27
VRK1-202ENST00000553683 H3BSH0 61 aa0.86□□□□□ -2.27
VRK1-202ENST00000553683 I3L2K1 104 aa0.86□□□□□ -2.27
VRK1-202ENST00000553683 ANGP03950 147 aaKnown RBP0.86□□□□□ -2.27
VRK1-202ENST00000553683 Q6ZRN7 208 aaPredicted RBP0.86□□□□□ -2.27
VRK1-202ENST00000553683 Q6ZRX8 168 aa0.86□□□□□ -2.27
VRK1-202ENST00000553683 PLAC4Q8WY50 150 aa0.86□□□□□ -2.27
VRK1-202ENST00000553683 KNL1Q8NG31 2342 aa0.86□□□□□ -2.27
VRK1-202ENST00000553683 DYNC1H1Q14204 4646 aaKnown RBP0.85□□□□□ -2.27
VRK1-202ENST00000553683 HSPG2P98160 4391 aa0.85□□□□□ -2.27
VRK1-202ENST00000553683 LYNX1G3V0Z9 82 aa0.85□□□□□ -2.27
VRK1-202ENST00000553683 MRPL33O75394 65 aaKnown RBP0.85□□□□□ -2.27
VRK1-202ENST00000553683 RPS27P42677 84 aaKnown RBP0.85□□□□□ -2.27
VRK1-202ENST00000553683 C10orf99Q6UWK7 81 aa0.85□□□□□ -2.27
VRK1-202ENST00000553683 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.85□□□□□ -2.27
VRK1-202ENST00000553683 Q6ZSA8 131 aa0.85□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms