RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 FAM223AQ8IWN6 122 aa1.13□□□□□ -2.23
LIMA1-210ENST00000552045 C9orf62Q8N4C0 152 aa1.13□□□□□ -2.23
LIMA1-210ENST00000552045 hADV29S1A0JD25 119 aa1.12□□□□□ -2.23
LIMA1-210ENST00000552045 SSSCA1O60232 199 aa1.12□□□□□ -2.23
LIMA1-210ENST00000552045 WFDC2Q14508 124 aa1.12□□□□□ -2.23
LIMA1-210ENST00000552045 Q5VV11 94 aa1.12□□□□□ -2.23
LIMA1-210ENST00000552045 LEAP2Q969E1 77 aa1.12□□□□□ -2.23
LIMA1-210ENST00000552045 CYP4F30PQ9H0H9 118 aa1.12□□□□□ -2.23
LIMA1-210ENST00000552045 FLGP20930 4061 aaPredicted RBP1.12□□□□□ -2.23
LIMA1-210ENST00000552045 H3BNG1 76 aa1.11□□□□□ -2.23
LIMA1-210ENST00000552045 H3BQ15 152 aa1.11□□□□□ -2.23
LIMA1-210ENST00000552045 APELAP0DMC3 54 aa1.11□□□□□ -2.23
LIMA1-210ENST00000552045 GCHFRP30047 84 aa1.11□□□□□ -2.23
LIMA1-210ENST00000552045 ATP5EP56381 51 aaPredicted RBP1.11□□□□□ -2.23
LIMA1-210ENST00000552045 FAM213BQ8TBF2 198 aa1.11□□□□□ -2.23
LIMA1-210ENST00000552045 SPRR2FQ96RM1 72 aa1.11□□□□□ -2.23
LIMA1-210ENST00000552045 LENEPQ9Y5L5 61 aa1.11□□□□□ -2.23
LIMA1-210ENST00000552045 MUC5ACP98088 5654 aa1.1□□□□□ -2.23
LIMA1-210ENST00000552045 A0A096LPF7 62 aa1.1□□□□□ -2.23
LIMA1-210ENST00000552045 M0R135 149 aa1.1□□□□□ -2.23
LIMA1-210ENST00000552045 GNGT2O14610 69 aa1.1□□□□□ -2.23
LIMA1-210ENST00000552045 NDUFA3O95167 84 aa1.1□□□□□ -2.23
LIMA1-210ENST00000552045 IGLC1P0CG04 106 aa1.1□□□□□ -2.23
LIMA1-210ENST00000552045 WFDC10BQ8IUB3 73 aa1.1□□□□□ -2.23
LIMA1-210ENST00000552045 VAMP8Q9BV40 100 aa1.1□□□□□ -2.23
LIMA1-210ENST00000552045 RABAC1Q9UI14 185 aa1.1□□□□□ -2.23
LIMA1-210ENST00000552045 R4GMQ9 66 aa1.1□□□□□ -2.23
LIMA1-210ENST00000552045 V9GYS6 101 aa1.1□□□□□ -2.23
LIMA1-210ENST00000552045 A0A1B0GWA3 101 aa1.09□□□□□ -2.23
LIMA1-210ENST00000552045 GNG11P61952 73 aa1.09□□□□□ -2.23
LIMA1-210ENST00000552045 Q0VG73 95 aa1.09□□□□□ -2.23
LIMA1-210ENST00000552045 PRO1933Q9H354 126 aa1.09□□□□□ -2.23
LIMA1-210ENST00000552045 NPVFQ9HCQ7 196 aa1.09□□□□□ -2.23
LIMA1-210ENST00000552045 PRH1P02810 166 aa1.08□□□□□ -2.24
LIMA1-210ENST00000552045 NMBP08949 121 aa1.08□□□□□ -2.24
LIMA1-210ENST00000552045 LINC00032P0C843 101 aa1.08□□□□□ -2.24
LIMA1-210ENST00000552045 RHPN1-AS1Q9BWJ2 59 aa1.08□□□□□ -2.24
LIMA1-210ENST00000552045 Q9H521 79 aa1.08□□□□□ -2.24
LIMA1-210ENST00000552045 TRBV7-3A0A075B6L6 115 aa1.07□□□□□ -2.24
LIMA1-210ENST00000552045 MT2AP02795 61 aa1.07□□□□□ -2.24
LIMA1-210ENST00000552045 SPAG11BQ08648 103 aa1.07□□□□□ -2.24
LIMA1-210ENST00000552045 PYY3Q5JQD4 70 aa1.07□□□□□ -2.24
LIMA1-210ENST00000552045 SPAG11AQ6PDA7 123 aa1.07□□□□□ -2.24
LIMA1-210ENST00000552045 PMCHL2Q9BQD1 86 aa1.07□□□□□ -2.24
LIMA1-210ENST00000552045 AP4S1Q9Y587 144 aa1.07□□□□□ -2.24
LIMA1-210ENST00000552045 TRAV22A0A0B4J277 110 aa1.06□□□□□ -2.24
LIMA1-210ENST00000552045 NDUFA4O00483 81 aa1.06□□□□□ -2.24
LIMA1-210ENST00000552045 SEC11AP67812 179 aa1.06□□□□□ -2.24
LIMA1-210ENST00000552045 LINC01556Q5JQF7 62 aa1.06□□□□□ -2.24
LIMA1-210ENST00000552045 PSMG4Q5JS54 123 aa1.06□□□□□ -2.24
LIMA1-210ENST00000552045 TIMM8BQ9Y5J9 83 aaPredicted RBP1.06□□□□□ -2.24
LIMA1-210ENST00000552045 MUC16Q8WXI7 14507 aa1.05□□□□□ -2.24
LIMA1-210ENST00000552045 NAP1L6A6NFF2 107 aa1.05□□□□□ -2.24
LIMA1-210ENST00000552045 HMGN4O00479 90 aa1.05□□□□□ -2.24
LIMA1-210ENST00000552045 CYB5AP00167 134 aa1.05□□□□□ -2.24
LIMA1-210ENST00000552045 MT1FP04733 61 aa1.05□□□□□ -2.24
LIMA1-210ENST00000552045 MT4P47944 62 aa1.05□□□□□ -2.24
LIMA1-210ENST00000552045 NOP10Q9NPE3 64 aaKnown RBP1.05□□□□□ -2.24
LIMA1-210ENST00000552045 NDUFA4L2Q9NRX3 87 aa1.05□□□□□ -2.24
LIMA1-210ENST00000552045 TRBV7-7A0A0K0K1E9 115 aa1.04□□□□□ -2.24
LIMA1-210ENST00000552045 CHKB-CPT1BH3BT56 60 aa1.04□□□□□ -2.24
LIMA1-210ENST00000552045 HTN1P15515 57 aa1.04□□□□□ -2.24
LIMA1-210ENST00000552045 UBE2D3P61077 147 aa1.04□□□□□ -2.24
LIMA1-210ENST00000552045 UBE2D2P62837 147 aa1.04□□□□□ -2.24
LIMA1-210ENST00000552045 RPL38P63173 70 aaKnown RBP1.04□□□□□ -2.24
LIMA1-210ENST00000552045 CFAP126Q5VTH2 177 aa1.04□□□□□ -2.24
LIMA1-210ENST00000552045 RPS27LQ71UM5 84 aaKnown RBP1.04□□□□□ -2.24
LIMA1-210ENST00000552045 TMEM167AQ8TBQ9 72 aa1.04□□□□□ -2.24
LIMA1-210ENST00000552045 FAM167A-AS1Q96KT0 104 aa1.04□□□□□ -2.24
LIMA1-210ENST00000552045 MGST2Q99735 147 aa1.04□□□□□ -2.24
LIMA1-210ENST00000552045 C20orf78Q9BR46 151 aa1.04□□□□□ -2.24
LIMA1-210ENST00000552045 CDC42SE2Q9NRR3 84 aa1.04□□□□□ -2.24
LIMA1-210ENST00000552045 V9GYH0 126 aa1.04□□□□□ -2.24
LIMA1-210ENST00000552045 CRYM-AS1A6NIL9 109 aa1.03□□□□□ -2.24
LIMA1-210ENST00000552045 SFT2D2O95562 160 aa1.03□□□□□ -2.24
LIMA1-210ENST00000552045 SFTA2Q6UW10 78 aa1.03□□□□□ -2.24
LIMA1-210ENST00000552045 MANBALQ9NQG1 85 aa1.03□□□□□ -2.24
LIMA1-210ENST00000552045 CPSF4LA6NMK7 179 aaKnown RBP1.02□□□□□ -2.25
LIMA1-210ENST00000552045 ATOX1O00244 68 aa1.02□□□□□ -2.25
LIMA1-210ENST00000552045 APOC3P02656 99 aa1.02□□□□□ -2.25
LIMA1-210ENST00000552045 FAUP35544 74 aaKnown RBP1.02□□□□□ -2.25
LIMA1-210ENST00000552045 KRTDAPP60985 99 aa1.02□□□□□ -2.25
LIMA1-210ENST00000552045 SERP2Q8N6R1 65 aa1.02□□□□□ -2.25
LIMA1-210ENST00000552045 PRO0255Q9UI72 69 aa1.02□□□□□ -2.25
LIMA1-210ENST00000552045 UBE2D4Q9Y2X8 147 aa1.02□□□□□ -2.25
LIMA1-210ENST00000552045 H7BZZ5 65 aa1.01□□□□□ -2.25
LIMA1-210ENST00000552045 K7EP34 96 aa1.01□□□□□ -2.25
LIMA1-210ENST00000552045 TRAPPC2P0DI81 140 aa1.01□□□□□ -2.25
LIMA1-210ENST00000552045 TRAPPC2BP0DI82 140 aa1.01□□□□□ -2.25
LIMA1-210ENST00000552045 TMEM263Q8WUH6 116 aaKnown RBP1.01□□□□□ -2.25
LIMA1-210ENST00000552045 PRO1854Q9UHT4 67 aa1.01□□□□□ -2.25
LIMA1-210ENST00000552045 A0A0G2JND7 137 aa1□□□□□ -2.25
LIMA1-210ENST00000552045 CTXND1A0A1B0GTU2 59 aa1□□□□□ -2.25
LIMA1-210ENST00000552045 H3BQF6 201 aa1□□□□□ -2.25
LIMA1-210ENST00000552045 SAA2P0DJI9 122 aaPredicted RBP1□□□□□ -2.25
LIMA1-210ENST00000552045 RPS27P42677 84 aaKnown RBP1□□□□□ -2.25
LIMA1-210ENST00000552045 TRGV9Q99603 122 aa1□□□□□ -2.25
LIMA1-210ENST00000552045 CACFD1Q9UGQ2 172 aa1□□□□□ -2.25
LIMA1-210ENST00000552045 IGLC7A0M8Q6 106 aa0.99□□□□□ -2.25
LIMA1-210ENST00000552045 SYS1-DBNDD2H3BUS1 97 aa0.99□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms