RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 KRTAP10-1P60331 282 aa9.06□□□□□ -0.96
CUX1-214ENST00000550008 CDC42SE1Q9NRR8 79 aa9.06□□□□□ -0.96
CUX1-214ENST00000550008 TRRAPQ9Y4A5 3859 aa9.03□□□□□ -0.96
CUX1-214ENST00000550008 VPS13CQ709C8 3753 aa9.03□□□□□ -0.96
CUX1-214ENST00000550008 Q8N1X5 172 aa9.02□□□□□ -0.97
CUX1-214ENST00000550008 UQCR11O14957 56 aa9.01□□□□□ -0.97
CUX1-214ENST00000550008 SPANXA2-OT1Q8N9U9 137 aa9.01□□□□□ -0.97
CUX1-214ENST00000550008 Q6ZR54 194 aa9□□□□□ -0.97
CUX1-214ENST00000550008 Q6ZRN7 208 aaPredicted RBP9□□□□□ -0.97
CUX1-214ENST00000550008 Q8N9P0 234 aaPredicted RBP8.97□□□□□ -0.97
CUX1-214ENST00000550008 MIR22HGQ0VDD5 57 aa8.96□□□□□ -0.97
CUX1-214ENST00000550008 H3BS24 57 aa8.95□□□□□ -0.98
CUX1-214ENST00000550008 Q5VV11 94 aa8.92□□□□□ -0.98
CUX1-214ENST00000550008 A0A087X002 238 aa8.91□□□□□ -0.98
CUX1-214ENST00000550008 SPINT4Q6UDR6 99 aa8.9□□□□□ -0.98
CUX1-214ENST00000550008 PRAC1Q96KF2 57 aa8.9□□□□□ -0.98
CUX1-214ENST00000550008 Q75L30 129 aa8.89□□□□□ -0.99
CUX1-214ENST00000550008 NOTCH2NLQ7Z3S9 236 aa8.89□□□□□ -0.99
CUX1-214ENST00000550008 HRES1P13985 223 aa8.89□□□□□ -0.99
CUX1-214ENST00000550008 LINC01554Q52M75 96 aa8.87□□□□□ -0.99
CUX1-214ENST00000550008 IGLV7-46A0A075B6I9 117 aa8.87□□□□□ -0.99
CUX1-214ENST00000550008 SRRM2Q9UQ35 2752 aaKnown RBP8.86□□□□□ -0.99
CUX1-214ENST00000550008 LINC00483Q53H64 154 aa8.84□□□□□ -0.99
CUX1-214ENST00000550008 KRTAP29-1A8MX34 341 aaPredicted RBP8.83□□□□□ -1
CUX1-214ENST00000550008 J3QL48 77 aa8.82□□□□□ -1
CUX1-214ENST00000550008 Q5W150 140 aa8.8□□□□□ -1
CUX1-214ENST00000550008 ANK3Q12955 4377 aaKnown RBP8.8□□□□□ -1
CUX1-214ENST00000550008 ZNF469Q96JG9 3925 aaPredicted RBP8.78□□□□□ -1
CUX1-214ENST00000550008 LINC01558Q9Y6Z2 57 aa8.77□□□□□ -1
CUX1-214ENST00000550008 LCE6AA0A183 80 aa8.77□□□□□ -1.01
CUX1-214ENST00000550008 KRTAP13-1Q8IUC0 172 aa8.76□□□□□ -1.01
CUX1-214ENST00000550008 SPINK7P58062 85 aa8.75□□□□□ -1.01
CUX1-214ENST00000550008 ZCCHC13Q8WW36 166 aaKnown RBP8.7□□□□□ -1.02
CUX1-214ENST00000550008 FBN3Q75N90 2809 aa8.7□□□□□ -1.02
CUX1-214ENST00000550008 KRTAP13-2Q52LG2 175 aa8.68□□□□□ -1.02
CUX1-214ENST00000550008 Q5VSD8 79 aa8.65□□□□□ -1.02
CUX1-214ENST00000550008 CSAG1Q6PB30 78 aa8.65□□□□□ -1.02
CUX1-214ENST00000550008 A0A0D9SG42 100 aa8.64□□□□□ -1.03
CUX1-214ENST00000550008 A8MU10 97 aa8.62□□□□□ -1.03
CUX1-214ENST00000550008 COX6B2Q6YFQ2 88 aa8.6□□□□□ -1.03
CUX1-214ENST00000550008 CRIPTQ9P021 101 aa8.58□□□□□ -1.04
CUX1-214ENST00000550008 Q6ZSA8 131 aa8.54□□□□□ -1.04
CUX1-214ENST00000550008 A6NN06 94 aa8.52□□□□□ -1.05
CUX1-214ENST00000550008 COL7A1Q02388 2944 aa8.5□□□□□ -1.05
CUX1-214ENST00000550008 DMAC1Q96GE9 116 aa8.5□□□□□ -1.05
CUX1-214ENST00000550008 A0A1B0GU33 70 aa8.48□□□□□ -1.05
CUX1-214ENST00000550008 MEGF8Q7Z7M0 2845 aa8.48□□□□□ -1.05
CUX1-214ENST00000550008 ASB16-AS1Q495Z4 193 aa8.43□□□□□ -1.06
CUX1-214ENST00000550008 ADM2Q7Z4H4 148 aa8.41□□□□□ -1.06
CUX1-214ENST00000550008 CSMD3Q7Z407 3707 aa8.39□□□□□ -1.07
CUX1-214ENST00000550008 KRTAP1-4P0C5Y4 121 aa8.38□□□□□ -1.07
CUX1-214ENST00000550008 S4R3F8 94 aa8.32□□□□□ -1.08
CUX1-214ENST00000550008 KRTAP21-3Q3LHN1 58 aa8.31□□□□□ -1.08
CUX1-214ENST00000550008 SPATA8Q6RVD6 105 aa8.28□□□□□ -1.08
CUX1-214ENST00000550008 AKAP9Q99996 3911 aa8.24□□□□□ -1.09
CUX1-214ENST00000550008 RPS29P62273 56 aaKnown RBP8.22□□□□□ -1.09
CUX1-214ENST00000550008 LUZP6Q538Z0 58 aa8.2□□□□□ -1.1
CUX1-214ENST00000550008 H1FX-AS1Q4G0G2 97 aa8.16□□□□□ -1.1
CUX1-214ENST00000550008 SEC61BP60468 96 aaKnown RBP8.15□□□□□ -1.11
CUX1-214ENST00000550008 M0R2T5 61 aa8.13□□□□□ -1.11
CUX1-214ENST00000550008 KRTAP25-1Q3LHN0 102 aa8.12□□□□□ -1.11
CUX1-214ENST00000550008 R4GN34 69 aa8.11□□□□□ -1.11
CUX1-214ENST00000550008 A8MUU9 505 aa8.11□□□□□ -1.11
CUX1-214ENST00000550008 ROMO1P60602 79 aa8.1□□□□□ -1.11
CUX1-214ENST00000550008 KRTAP16-1A8MUX0 517 aa8.09□□□□□ -1.11
CUX1-214ENST00000550008 CAMK2N1Q7Z7J9 78 aa8.09□□□□□ -1.11
CUX1-214ENST00000550008 C20orf166-AS1Q96NR2 134 aa8.08□□□□□ -1.12
CUX1-214ENST00000550008 HUWE1Q7Z6Z7 4374 aaKnown RBP8.08□□□□□ -1.12
CUX1-214ENST00000550008 RPL37P61927 97 aaKnown RBP8.07□□□□□ -1.12
CUX1-214ENST00000550008 M0QZ58 72 aa8.03□□□□□ -1.12
CUX1-214ENST00000550008 A0A0A0MQY5 61 aa8.01□□□□□ -1.13
CUX1-214ENST00000550008 NDUFAF8A1L188 74 aa7.99□□□□□ -1.13
CUX1-214ENST00000550008 XP32Q5T750 250 aa7.97□□□□□ -1.13
CUX1-214ENST00000550008 A0A1B0GVY2 172 aa7.95□□□□□ -1.14
CUX1-214ENST00000550008 KRTAP13-3Q3SY46 172 aa7.94□□□□□ -1.14
CUX1-214ENST00000550008 DNHD1Q96M86 4753 aa7.87□□□□□ -1.15
CUX1-214ENST00000550008 DNAH9Q9NYC9 4486 aa7.82□□□□□ -1.16
CUX1-214ENST00000550008 KRTAP10-8P60410 259 aa7.8□□□□□ -1.16
CUX1-214ENST00000550008 PLECQ15149 4684 aaKnown RBP7.77□□□□□ -1.16
CUX1-214ENST00000550008 H0YAA0 97 aa7.76□□□□□ -1.17
CUX1-214ENST00000550008 DNAH10Q8IVF4 4471 aa7.76□□□□□ -1.17
CUX1-214ENST00000550008 P0C880 135 aa7.69□□□□□ -1.18
CUX1-214ENST00000550008 TPRXLQ17RH7 258 aa7.67□□□□□ -1.18
CUX1-214ENST00000550008 DNAH11Q96DT5 4516 aa7.66□□□□□ -1.18
CUX1-214ENST00000550008 KRTAP3-1Q9BYR8 98 aa7.62□□□□□ -1.19
CUX1-214ENST00000550008 C10orf95Q9H7T3 257 aa7.62□□□□□ -1.19
CUX1-214ENST00000550008 DNAH1Q9P2D7 4330 aa7.6□□□□□ -1.19
CUX1-214ENST00000550008 STARD9Q9P2P6 4700 aa7.57□□□□□ -1.2
CUX1-214ENST00000550008 PRKDCP78527 4128 aaKnown RBP7.56□□□□□ -1.2
CUX1-214ENST00000550008 DNAH5Q8TE73 4624 aa7.55□□□□□ -1.2
CUX1-214ENST00000550008 PLAC4Q8WY50 150 aa7.53□□□□□ -1.2
CUX1-214ENST00000550008 ANK2Q01484 3957 aa7.52□□□□□ -1.21
CUX1-214ENST00000550008 KRTAP10-4P60372 401 aaPredicted RBP7.49□□□□□ -1.21
CUX1-214ENST00000550008 FAT1Q14517 4588 aa7.47□□□□□ -1.21
CUX1-214ENST00000550008 MT1HL1P0DM35 61 aa7.43□□□□□ -1.22
CUX1-214ENST00000550008 VPS13DQ5THJ4 4388 aa7.42□□□□□ -1.22
CUX1-214ENST00000550008 KRTAP4-5Q9BYR2 181 aa7.41□□□□□ -1.22
CUX1-214ENST00000550008 KMT2AQ03164 3969 aa7.39□□□□□ -1.23
CUX1-214ENST00000550008 LRP1BQ9NZR2 4599 aa7.36□□□□□ -1.23
CUX1-214ENST00000550008 LYSTQ99698 3801 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms