RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 REG3GQ6UW15 175 aa5.2□□□□□ -1.58
VPS29-203ENST00000546588 KRTAP10-1P60331 282 aa5.19□□□□□ -1.58
VPS29-203ENST00000546588 KRTAP10-7P60409 375 aaPredicted RBP5.19□□□□□ -1.58
VPS29-203ENST00000546588 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.19□□□□□ -1.58
VPS29-203ENST00000546588 KRTAP11-1Q8IUC1 163 aa5.19□□□□□ -1.58
VPS29-203ENST00000546588 DHRS4-AS1Q9P1J3 65 aa5.19□□□□□ -1.58
VPS29-203ENST00000546588 RYR3Q15413 4870 aa5.18□□□□□ -1.58
VPS29-203ENST00000546588 IGLV5-48A0A075B6I7 105 aa5.18□□□□□ -1.58
VPS29-203ENST00000546588 A0A087X002 238 aa5.18□□□□□ -1.58
VPS29-203ENST00000546588 RPL37AP8A6NKH3 93 aa5.18□□□□□ -1.58
VPS29-203ENST00000546588 F8WEM9 126 aa5.18□□□□□ -1.58
VPS29-203ENST00000546588 OBSCN-AS1Q96MR7 158 aa5.18□□□□□ -1.58
VPS29-203ENST00000546588 Q9BRP9 147 aa5.18□□□□□ -1.58
VPS29-203ENST00000546588 DNAL4O96015 105 aa5.17□□□□□ -1.58
VPS29-203ENST00000546588 CIRBP-AS1Q8TBR5 109 aa5.17□□□□□ -1.58
VPS29-203ENST00000546588 SMCR5Q8TEV8 140 aa5.17□□□□□ -1.58
VPS29-203ENST00000546588 CYP4F30PQ9H0H9 118 aa5.17□□□□□ -1.58
VPS29-203ENST00000546588 LRP1BQ9NZR2 4599 aa5.16□□□□□ -1.58
VPS29-203ENST00000546588 DYNC1H1Q14204 4646 aaKnown RBP5.16□□□□□ -1.58
VPS29-203ENST00000546588 ETDCA0A1B0GVM5 59 aa5.16□□□□□ -1.58
VPS29-203ENST00000546588 ORMDL1Q9P0S3 153 aa5.16□□□□□ -1.58
VPS29-203ENST00000546588 Q6ZQY7 126 aa5.15□□□□□ -1.59
VPS29-203ENST00000546588 SPRR1BP22528 89 aa5.14□□□□□ -1.59
VPS29-203ENST00000546588 APOBP04114 4563 aaKnown RBP5.13□□□□□ -1.59
VPS29-203ENST00000546588 BAALC-AS2P0C853 105 aa5.13□□□□□ -1.59
VPS29-203ENST00000546588 PSORS1C2Q9UIG4 136 aa5.13□□□□□ -1.59
VPS29-203ENST00000546588 ERC2-IT1O76042 136 aa5.12□□□□□ -1.59
VPS29-203ENST00000546588 KRTAP10-6P60371 365 aaPredicted RBP5.12□□□□□ -1.59
VPS29-203ENST00000546588 SPTSSBQ8NFR3 76 aa5.12□□□□□ -1.59
VPS29-203ENST00000546588 VPS13BQ7Z7G8 4022 aa5.11□□□□□ -1.59
VPS29-203ENST00000546588 JMJD7-PLA2G4BH0Y9G9 81 aa5.1□□□□□ -1.59
VPS29-203ENST00000546588 ZNF861PO60384 105 aa5.1□□□□□ -1.59
VPS29-203ENST00000546588 PRLHP81277 87 aa5.1□□□□□ -1.59
VPS29-203ENST00000546588 FAM229BQ4G0N7 80 aa5.1□□□□□ -1.59
VPS29-203ENST00000546588 LINC00483Q53H64 154 aa5.1□□□□□ -1.59
VPS29-203ENST00000546588 Q8N377 158 aa5.1□□□□□ -1.59
VPS29-203ENST00000546588 RETNLBQ9BQ08 111 aa5.1□□□□□ -1.59
VPS29-203ENST00000546588 IGLV8-61A0A075B6I0 122 aa5.09□□□□□ -1.59
VPS29-203ENST00000546588 HCG22E2RYF7 251 aa5.09□□□□□ -1.59
VPS29-203ENST00000546588 IGLV7-43P04211 117 aa5.09□□□□□ -1.59
VPS29-203ENST00000546588 IGLV7-46A0A075B6I9 117 aa5.08□□□□□ -1.6
VPS29-203ENST00000546588 LOC110117498A0A087WWA1 95 aa5.08□□□□□ -1.6
VPS29-203ENST00000546588 TRBV7-4A0A0J9YYF1 115 aa5.08□□□□□ -1.6
VPS29-203ENST00000546588 KRTAP10-4P60372 401 aaPredicted RBP5.08□□□□□ -1.6
VPS29-203ENST00000546588 LIMD2Q9BT23 127 aa5.08□□□□□ -1.6
VPS29-203ENST00000546588 KRTAP2-2Q9BYT5 123 aa5.08□□□□□ -1.6
VPS29-203ENST00000546588 CDC42SE1Q9NRR8 79 aa5.08□□□□□ -1.6
VPS29-203ENST00000546588 PKHD1L1Q86WI1 4243 aa5.08□□□□□ -1.6
VPS29-203ENST00000546588 TRAV22A0A0B4J277 110 aa5.07□□□□□ -1.6
VPS29-203ENST00000546588 C1orf137Q5JT78 98 aa5.07□□□□□ -1.6
VPS29-203ENST00000546588 hDV103S1A0JD37 113 aa5.06□□□□□ -1.6
VPS29-203ENST00000546588 KRTAP16-1A8MUX0 517 aa5.06□□□□□ -1.6
VPS29-203ENST00000546588 PDE6GP18545 87 aa5.06□□□□□ -1.6
VPS29-203ENST00000546588 ST20-AS1Q8NBB2 130 aa5.06□□□□□ -1.6
VPS29-203ENST00000546588 SPRR4Q96PI1 79 aa5.06□□□□□ -1.6
VPS29-203ENST00000546588 HIGD2AQ9BW72 106 aa5.06□□□□□ -1.6
VPS29-203ENST00000546588 RPL37AP61513 92 aaKnown RBP5.04□□□□□ -1.6
VPS29-203ENST00000546588 CASC2Q6XLA1 102 aa5.04□□□□□ -1.6
VPS29-203ENST00000546588 Q6ZQT0 140 aa5.04□□□□□ -1.6
VPS29-203ENST00000546588 Q8NBF4 154 aa5.04□□□□□ -1.6
VPS29-203ENST00000546588 HSPG2P98160 4391 aa5.03□□□□□ -1.6
VPS29-203ENST00000546588 CHKB-CPT1BH3BT56 60 aa5.03□□□□□ -1.6
VPS29-203ENST00000546588 OCR1Q9BZK8 76 aa5.03□□□□□ -1.6
VPS29-203ENST00000546588 IGKV3D-7A0A0C4DH55 119 aa5.02□□□□□ -1.61
VPS29-203ENST00000546588 Q5VV11 94 aa5.02□□□□□ -1.61
VPS29-203ENST00000546588 RYR1P21817 5038 aa5.01□□□□□ -1.61
VPS29-203ENST00000546588 KRTAP1-4P0C5Y4 121 aa5.01□□□□□ -1.61
VPS29-203ENST00000546588 SPINK6Q6UWN8 80 aa5.01□□□□□ -1.61
VPS29-203ENST00000546588 C14orf132Q9NPU4 83 aa5.01□□□□□ -1.61
VPS29-203ENST00000546588 A0A087WVE0 104 aa5□□□□□ -1.61
VPS29-203ENST00000546588 HAMPP81172 84 aa5□□□□□ -1.61
VPS29-203ENST00000546588 SNURFQ9Y675 71 aa5□□□□□ -1.61
VPS29-203ENST00000546588 EPPK1P58107 5090 aaKnown RBP5□□□□□ -1.61
VPS29-203ENST00000546588 SRRM2Q9UQ35 2752 aaKnown RBP4.99□□□□□ -1.61
VPS29-203ENST00000546588 A6NED7 52 aa4.98□□□□□ -1.61
VPS29-203ENST00000546588 DEFB105AQ8NG35 78 aa4.98□□□□□ -1.61
VPS29-203ENST00000546588 A0A1W2PNM2 257 aa4.97□□□□□ -1.61
VPS29-203ENST00000546588 IGFL1Q6UW32 110 aa4.97□□□□□ -1.61
VPS29-203ENST00000546588 K7ERS5 55 aa4.96□□□□□ -1.62
VPS29-203ENST00000546588 MOBPQ13875 183 aa4.96□□□□□ -1.62
VPS29-203ENST00000546588 TMEM254Q8TBM7 123 aa4.96□□□□□ -1.62
VPS29-203ENST00000546588 FAT1Q14517 4588 aa4.95□□□□□ -1.62
VPS29-203ENST00000546588 SSBP3-AS1Q7Z2R9 100 aa4.94□□□□□ -1.62
VPS29-203ENST00000546588 LINC00846Q9NV44 126 aa4.94□□□□□ -1.62
VPS29-203ENST00000546588 KIAA1109Q2LD37 5005 aa4.94□□□□□ -1.62
VPS29-203ENST00000546588 KRTAP13-2Q52LG2 175 aa4.93□□□□□ -1.62
VPS29-203ENST00000546588 LOC101927531A0A1B0GV80 90 aa4.92□□□□□ -1.62
VPS29-203ENST00000546588 SMR3BP02814 79 aaPredicted RBP4.92□□□□□ -1.62
VPS29-203ENST00000546588 NDUFAF8A1L188 74 aa4.91□□□□□ -1.62
VPS29-203ENST00000546588 RPS29P62273 56 aaKnown RBP4.91□□□□□ -1.62
VPS29-203ENST00000546588 PRR4Q16378 134 aa4.91□□□□□ -1.62
VPS29-203ENST00000546588 LCE1EQ5T753 118 aa4.91□□□□□ -1.62
VPS29-203ENST00000546588 Q5VSD8 79 aa4.91□□□□□ -1.62
VPS29-203ENST00000546588 UBL5Q9BZL1 73 aa4.91□□□□□ -1.62
VPS29-203ENST00000546588 ROMO1P60602 79 aa4.9□□□□□ -1.63
VPS29-203ENST00000546588 LUZP6Q538Z0 58 aa4.9□□□□□ -1.63
VPS29-203ENST00000546588 NREPQ16612 68 aa4.89□□□□□ -1.63
VPS29-203ENST00000546588 C1orf64Q8NEQ6 169 aa4.89□□□□□ -1.63
VPS29-203ENST00000546588 PRR15LQ9BU68 103 aa4.89□□□□□ -1.63
VPS29-203ENST00000546588 ANAPC11Q9NYG5 84 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 288.3 ms