RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 WWC2-AS2Q96NR7 200 aa8.8□□□□□ -1
HOXC11-202ENST00000546378 Q5W150 140 aa8.79□□□□□ -1
HOXC11-202ENST00000546378 MRPL34Q9BQ48 92 aaKnown RBP8.78□□□□□ -1
HOXC11-202ENST00000546378 A0A1B0GVX0 72 aa8.78□□□□□ -1
HOXC11-202ENST00000546378 RBM12B-AS1Q9P1G2 102 aa8.77□□□□□ -1.01
HOXC11-202ENST00000546378 C1orf134Q5TEV5 83 aa8.76□□□□□ -1.01
HOXC11-202ENST00000546378 ADM2Q7Z4H4 148 aa8.76□□□□□ -1.01
HOXC11-202ENST00000546378 RTL8CO15255 209 aa8.76□□□□□ -1.01
HOXC11-202ENST00000546378 IGLV7-46A0A075B6I9 117 aa8.75□□□□□ -1.01
HOXC11-202ENST00000546378 KRTAP21-3Q3LHN1 58 aa8.75□□□□□ -1.01
HOXC11-202ENST00000546378 SPACA4Q8TDM5 124 aa8.74□□□□□ -1.01
HOXC11-202ENST00000546378 IGLV5-52A0A0A0MRZ9 124 aa8.73□□□□□ -1.01
HOXC11-202ENST00000546378 A0A087WTM6 91 aa8.73□□□□□ -1.01
HOXC11-202ENST00000546378 SPANXA2-OT1Q8N9U9 137 aa8.72□□□□□ -1.01
HOXC11-202ENST00000546378 KMT2AQ03164 3969 aa8.72□□□□□ -1.01
HOXC11-202ENST00000546378 Q6ZRN7 208 aaPredicted RBP8.72□□□□□ -1.01
HOXC11-202ENST00000546378 Q96NJ1 140 aa8.71□□□□□ -1.01
HOXC11-202ENST00000546378 KTN1-AS1Q86SY8 53 aa8.71□□□□□ -1.02
HOXC11-202ENST00000546378 H3BPC8 53 aa8.67□□□□□ -1.02
HOXC11-202ENST00000546378 DNAH1Q9P2D7 4330 aa8.67□□□□□ -1.02
HOXC11-202ENST00000546378 TP53AIP1Q9HCN2 124 aa8.67□□□□□ -1.02
HOXC11-202ENST00000546378 ATP11AUNQ6ZP68 121 aa8.66□□□□□ -1.02
HOXC11-202ENST00000546378 Q6ZR54 194 aa8.66□□□□□ -1.02
HOXC11-202ENST00000546378 Q75L30 129 aa8.66□□□□□ -1.02
HOXC11-202ENST00000546378 A0A1B0GU69 56 aa8.64□□□□□ -1.03
HOXC11-202ENST00000546378 CDC42SE1Q9NRR8 79 aa8.64□□□□□ -1.03
HOXC11-202ENST00000546378 ZNF861PO60384 105 aa8.63□□□□□ -1.03
HOXC11-202ENST00000546378 Q8N1X5 172 aa8.63□□□□□ -1.03
HOXC11-202ENST00000546378 SPRR1BP22528 89 aa8.63□□□□□ -1.03
HOXC11-202ENST00000546378 ZNF706Q9Y5V0 76 aaPredicted RBP8.6□□□□□ -1.03
HOXC11-202ENST00000546378 LINC00313P59037 77 aa8.59□□□□□ -1.03
HOXC11-202ENST00000546378 KRTAP10-2P60368 255 aa8.59□□□□□ -1.03
HOXC11-202ENST00000546378 VPS13DQ5THJ4 4388 aa8.58□□□□□ -1.04
HOXC11-202ENST00000546378 ACYP2P14621 99 aa8.58□□□□□ -1.04
HOXC11-202ENST00000546378 C7orf65Q6ZTY9 151 aa8.58□□□□□ -1.04
HOXC11-202ENST00000546378 LINC01558Q9Y6Z2 57 aa8.57□□□□□ -1.04
HOXC11-202ENST00000546378 KRTAP13-1Q8IUC0 172 aa8.56□□□□□ -1.04
HOXC11-202ENST00000546378 DYNC2H1Q8NCM8 4307 aaKnown RBP8.55□□□□□ -1.04
HOXC11-202ENST00000546378 A6NN06 94 aa8.55□□□□□ -1.04
HOXC11-202ENST00000546378 CRIPTQ9P021 101 aa8.53□□□□□ -1.04
HOXC11-202ENST00000546378 IGLV7-43P04211 117 aa8.52□□□□□ -1.05
HOXC11-202ENST00000546378 DNAH2Q9P225 4427 aa8.5□□□□□ -1.05
HOXC11-202ENST00000546378 DNAH8Q96JB1 4490 aa8.5□□□□□ -1.05
HOXC11-202ENST00000546378 C9orf92A6NGG3 77 aa8.49□□□□□ -1.05
HOXC11-202ENST00000546378 C4orf48Q5BLP8 95 aa8.49□□□□□ -1.05
HOXC11-202ENST00000546378 SMR3BP02814 79 aaPredicted RBP8.49□□□□□ -1.05
HOXC11-202ENST00000546378 HYDINQ4G0P3 5121 aa8.47□□□□□ -1.05
HOXC11-202ENST00000546378 MIR22HGQ0VDD5 57 aa8.45□□□□□ -1.06
HOXC11-202ENST00000546378 KRTAP10-1P60331 282 aa8.44□□□□□ -1.06
HOXC11-202ENST00000546378 DNAH6Q9C0G6 4158 aa8.44□□□□□ -1.06
HOXC11-202ENST00000546378 DNAH11Q96DT5 4516 aa8.44□□□□□ -1.06
HOXC11-202ENST00000546378 PLA2G1BP04054 148 aaKnown RBP8.41□□□□□ -1.06
HOXC11-202ENST00000546378 LINC00483Q53H64 154 aa8.4□□□□□ -1.06
HOXC11-202ENST00000546378 DNAH17Q9UFH2 4485 aa8.4□□□□□ -1.07
HOXC11-202ENST00000546378 FAM229AH3BQW9 127 aa8.39□□□□□ -1.07
HOXC11-202ENST00000546378 CSAG1Q6PB30 78 aa8.39□□□□□ -1.07
HOXC11-202ENST00000546378 PLAC8Q9NZF1 115 aa8.38□□□□□ -1.07
HOXC11-202ENST00000546378 UQCR11O14957 56 aa8.37□□□□□ -1.07
HOXC11-202ENST00000546378 KRTAP13-2Q52LG2 175 aa8.36□□□□□ -1.07
HOXC11-202ENST00000546378 ASB16-AS1Q495Z4 193 aa8.35□□□□□ -1.07
HOXC11-202ENST00000546378 HECTD4Q9Y4D8 3996 aa8.35□□□□□ -1.07
HOXC11-202ENST00000546378 TYMSOSQ8TAI1 123 aa8.35□□□□□ -1.07
HOXC11-202ENST00000546378 C8orf87E5RJ46 101 aa8.34□□□□□ -1.07
HOXC11-202ENST00000546378 DMAC1Q96GE9 116 aa8.3□□□□□ -1.08
HOXC11-202ENST00000546378 SSBP3-AS1Q7Z2R9 100 aa8.28□□□□□ -1.08
HOXC11-202ENST00000546378 SACSQ9NZJ4 4579 aa8.27□□□□□ -1.08
HOXC11-202ENST00000546378 LRP1BQ9NZR2 4599 aa8.27□□□□□ -1.09
HOXC11-202ENST00000546378 KMT2CQ8NEZ4 4911 aaKnown RBP8.27□□□□□ -1.09
HOXC11-202ENST00000546378 SPATA8Q6RVD6 105 aa8.25□□□□□ -1.09
HOXC11-202ENST00000546378 LINC01554Q52M75 96 aa8.24□□□□□ -1.09
HOXC11-202ENST00000546378 KRTAP13-3Q3SY46 172 aa8.23□□□□□ -1.09
HOXC11-202ENST00000546378 DNAH5Q8TE73 4624 aa8.23□□□□□ -1.09
HOXC11-202ENST00000546378 PKHD1P08F94 4074 aa8.22□□□□□ -1.09
HOXC11-202ENST00000546378 ALMS1Q8TCU4 4167 aa8.22□□□□□ -1.09
HOXC11-202ENST00000546378 A0A0D9SG42 100 aa8.2□□□□□ -1.1
HOXC11-202ENST00000546378 Q6ZSA8 131 aa8.19□□□□□ -1.1
HOXC11-202ENST00000546378 FAT2Q9NYQ8 4349 aa8.18□□□□□ -1.1
HOXC11-202ENST00000546378 H3BS24 57 aa8.16□□□□□ -1.1
HOXC11-202ENST00000546378 LINC00304Q8N9R0 145 aa8.11□□□□□ -1.11
HOXC11-202ENST00000546378 VPS13BQ7Z7G8 4022 aa8.11□□□□□ -1.11
HOXC11-202ENST00000546378 FAT1Q14517 4588 aa8.1□□□□□ -1.11
HOXC11-202ENST00000546378 PKD1P98161 4303 aa8.1□□□□□ -1.11
HOXC11-202ENST00000546378 DYNC1H1Q14204 4646 aaKnown RBP8.09□□□□□ -1.11
HOXC11-202ENST00000546378 A0A1B0GVY2 172 aa8.08□□□□□ -1.12
HOXC11-202ENST00000546378 KRTAP16-1A8MUX0 517 aa8.08□□□□□ -1.12
HOXC11-202ENST00000546378 RYR2Q92736 4967 aa8.07□□□□□ -1.12
HOXC11-202ENST00000546378 MYCBP2O75592 4640 aa8.06□□□□□ -1.12
HOXC11-202ENST00000546378 KRTAP1-4P0C5Y4 121 aa8.06□□□□□ -1.12
HOXC11-202ENST00000546378 A0A1B0GU33 70 aa8.04□□□□□ -1.12
HOXC11-202ENST00000546378 H0YAA0 97 aa8.02□□□□□ -1.13
HOXC11-202ENST00000546378 RYR3Q15413 4870 aa7.99□□□□□ -1.13
HOXC11-202ENST00000546378 K7ERS5 55 aa7.92□□□□□ -1.14
HOXC11-202ENST00000546378 Q5VSD8 79 aa7.91□□□□□ -1.14
HOXC11-202ENST00000546378 APOBP04114 4563 aaKnown RBP7.9□□□□□ -1.15
HOXC11-202ENST00000546378 KIAA1109Q2LD37 5005 aa7.88□□□□□ -1.15
HOXC11-202ENST00000546378 SPINT4Q6UDR6 99 aa7.87□□□□□ -1.15
HOXC11-202ENST00000546378 C10orf95Q9H7T3 257 aa7.86□□□□□ -1.15
HOXC11-202ENST00000546378 H1FX-AS1Q4G0G2 97 aa7.86□□□□□ -1.15
HOXC11-202ENST00000546378 KRTAP3-1Q9BYR8 98 aa7.86□□□□□ -1.15
HOXC11-202ENST00000546378 COX6B2Q6YFQ2 88 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms