RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-223ENST00000544268 LINC00313P59037 77 aa9.22□□□□□ -0.93
CHFR-223ENST00000544268 RTL8CO15255 209 aa9.21□□□□□ -0.93
CHFR-223ENST00000544268 DNAH11Q96DT5 4516 aa9.21□□□□□ -0.94
CHFR-223ENST00000544268 FAT2Q9NYQ8 4349 aa9.2□□□□□ -0.94
CHFR-223ENST00000544268 A0A087WSZ3 146 aa9.2□□□□□ -0.94
CHFR-223ENST00000544268 COA5Q86WW8 74 aa9.19□□□□□ -0.94
CHFR-223ENST00000544268 RPL37AP61513 92 aaKnown RBP9.19□□□□□ -0.94
CHFR-223ENST00000544268 KMT2CQ8NEZ4 4911 aaKnown RBP9.18□□□□□ -0.94
CHFR-223ENST00000544268 DNAH5Q8TE73 4624 aa9.18□□□□□ -0.94
CHFR-223ENST00000544268 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.17□□□□□ -0.94
CHFR-223ENST00000544268 IGLV5-52A0A0A0MRZ9 124 aa9.16□□□□□ -0.94
CHFR-223ENST00000544268 CASC2Q6XLA1 102 aa9.16□□□□□ -0.94
CHFR-223ENST00000544268 IGLV7-46A0A075B6I9 117 aa9.15□□□□□ -0.94
CHFR-223ENST00000544268 PRAC1Q96KF2 57 aa9.15□□□□□ -0.94
CHFR-223ENST00000544268 SPACA4Q8TDM5 124 aa9.15□□□□□ -0.94
CHFR-223ENST00000544268 LINC01558Q9Y6Z2 57 aa9.14□□□□□ -0.95
CHFR-223ENST00000544268 DNAH8Q96JB1 4490 aa9.13□□□□□ -0.95
CHFR-223ENST00000544268 KRTAP10-2P60368 255 aa9.13□□□□□ -0.95
CHFR-223ENST00000544268 PLAC8Q9NZF1 115 aa9.13□□□□□ -0.95
CHFR-223ENST00000544268 PKD1P98161 4303 aa9.12□□□□□ -0.95
CHFR-223ENST00000544268 IGLV8-61A0A075B6I0 122 aa9.1□□□□□ -0.95
CHFR-223ENST00000544268 RYR2Q92736 4967 aa9.08□□□□□ -0.96
CHFR-223ENST00000544268 A8MWP4 228 aa9.07□□□□□ -0.96
CHFR-223ENST00000544268 SPAG11AQ6PDA7 123 aa9.06□□□□□ -0.96
CHFR-223ENST00000544268 RYR3Q15413 4870 aa9.05□□□□□ -0.96
CHFR-223ENST00000544268 KRTAP13-1Q8IUC0 172 aa9.05□□□□□ -0.96
CHFR-223ENST00000544268 ANAPC11Q9NYG5 84 aa9.05□□□□□ -0.96
CHFR-223ENST00000544268 IGLV9-49A0A0B4J1Y8 123 aa9.04□□□□□ -0.96
CHFR-223ENST00000544268 ADM2Q7Z4H4 148 aa9.04□□□□□ -0.96
CHFR-223ENST00000544268 SPINK7P58062 85 aa9.03□□□□□ -0.96
CHFR-223ENST00000544268 PKHD1P08F94 4074 aa9.03□□□□□ -0.96
CHFR-223ENST00000544268 H0Y9J4 135 aa9.02□□□□□ -0.97
CHFR-223ENST00000544268 SPRR1BP22528 89 aa9.02□□□□□ -0.97
CHFR-223ENST00000544268 PLA2G1BP04054 148 aaKnown RBP9.02□□□□□ -0.97
CHFR-223ENST00000544268 LINC00472Q9H8W2 130 aa9.02□□□□□ -0.97
CHFR-223ENST00000544268 KRTAP10-1P60331 282 aa9□□□□□ -0.97
CHFR-223ENST00000544268 PCOTHQ58A44 107 aa9□□□□□ -0.97
CHFR-223ENST00000544268 MMP24-AS1A0A0U1RRL7 71 aa8.98□□□□□ -0.97
CHFR-223ENST00000544268 CIRBP-AS1Q8TBR5 109 aa8.96□□□□□ -0.97
CHFR-223ENST00000544268 PSORS1C2Q9UIG4 136 aa8.96□□□□□ -0.97
CHFR-223ENST00000544268 TP53AIP1Q9HCN2 124 aa8.96□□□□□ -0.98
CHFR-223ENST00000544268 Q6ZSA8 131 aa8.95□□□□□ -0.98
CHFR-223ENST00000544268 LRP1BQ9NZR2 4599 aa8.94□□□□□ -0.98
CHFR-223ENST00000544268 HRES1P13985 223 aa8.94□□□□□ -0.98
CHFR-223ENST00000544268 ASB16-AS1Q495Z4 193 aa8.91□□□□□ -0.98
CHFR-223ENST00000544268 Q96NJ1 140 aa8.91□□□□□ -0.98
CHFR-223ENST00000544268 DYNC1H1Q14204 4646 aaKnown RBP8.91□□□□□ -0.98
CHFR-223ENST00000544268 A0A1B0GVY2 172 aa8.89□□□□□ -0.99
CHFR-223ENST00000544268 ZNF706Q9Y5V0 76 aaPredicted RBP8.89□□□□□ -0.99
CHFR-223ENST00000544268 RETNLBQ9BQ08 111 aa8.87□□□□□ -0.99
CHFR-223ENST00000544268 LINC00483Q53H64 154 aa8.85□□□□□ -0.99
CHFR-223ENST00000544268 A0A087X002 238 aa8.84□□□□□ -0.99
CHFR-223ENST00000544268 ZNF861PO60384 105 aa8.84□□□□□ -0.99
CHFR-223ENST00000544268 NOTCH2NLQ7Z3S9 236 aa8.84□□□□□ -0.99
CHFR-223ENST00000544268 VPS13BQ7Z7G8 4022 aa8.83□□□□□ -1
CHFR-223ENST00000544268 IGLV7-43P04211 117 aa8.82□□□□□ -1
CHFR-223ENST00000544268 IGHV6-1A0A0B4J1U7 121 aa8.81□□□□□ -1
CHFR-223ENST00000544268 C8orf17Q9NRJ1 99 aa8.81□□□□□ -1
CHFR-223ENST00000544268 APOBP04114 4563 aaKnown RBP8.8□□□□□ -1
CHFR-223ENST00000544268 SPINK6Q6UWN8 80 aa8.76□□□□□ -1.01
CHFR-223ENST00000544268 CSAG1Q6PB30 78 aa8.74□□□□□ -1.01
CHFR-223ENST00000544268 EPPK1P58107 5090 aaKnown RBP8.74□□□□□ -1.01
CHFR-223ENST00000544268 MRPL34Q9BQ48 92 aaKnown RBP8.73□□□□□ -1.01
CHFR-223ENST00000544268 A0A0A0MQY5 61 aa8.72□□□□□ -1.01
CHFR-223ENST00000544268 A0A1B0GVX0 72 aa8.72□□□□□ -1.01
CHFR-223ENST00000544268 ACYP2P14621 99 aa8.72□□□□□ -1.01
CHFR-223ENST00000544268 FAT1Q14517 4588 aa8.72□□□□□ -1.01
CHFR-223ENST00000544268 SPATA8Q6RVD6 105 aa8.71□□□□□ -1.01
CHFR-223ENST00000544268 SMR3BP02814 79 aaPredicted RBP8.7□□□□□ -1.02
CHFR-223ENST00000544268 CDK2AP2O75956 126 aa8.66□□□□□ -1.02
CHFR-223ENST00000544268 A0A1B0GU69 56 aa8.65□□□□□ -1.02
CHFR-223ENST00000544268 Q5W150 140 aa8.63□□□□□ -1.03
CHFR-223ENST00000544268 ROMO1P60602 79 aa8.62□□□□□ -1.03
CHFR-223ENST00000544268 KRTAP13-3Q3SY46 172 aa8.62□□□□□ -1.03
CHFR-223ENST00000544268 MIR22HGQ0VDD5 57 aa8.61□□□□□ -1.03
CHFR-223ENST00000544268 KRTAP13-2Q52LG2 175 aa8.61□□□□□ -1.03
CHFR-223ENST00000544268 DMAC1Q96GE9 116 aa8.6□□□□□ -1.03
CHFR-223ENST00000544268 KRTAP1-4P0C5Y4 121 aa8.6□□□□□ -1.03
CHFR-223ENST00000544268 UQCR11O14957 56 aa8.59□□□□□ -1.03
CHFR-223ENST00000544268 HSPG2P98160 4391 aa8.59□□□□□ -1.03
CHFR-223ENST00000544268 KRTAP10-4P60372 401 aaPredicted RBP8.58□□□□□ -1.04
CHFR-223ENST00000544268 RYR1P21817 5038 aa8.55□□□□□ -1.04
CHFR-223ENST00000544268 SSBP3-AS1Q7Z2R9 100 aa8.52□□□□□ -1.05
CHFR-223ENST00000544268 KIAA1109Q2LD37 5005 aa8.5□□□□□ -1.05
CHFR-223ENST00000544268 FAM229AH3BQW9 127 aa8.46□□□□□ -1.05
CHFR-223ENST00000544268 PKHD1L1Q86WI1 4243 aa8.45□□□□□ -1.06
CHFR-223ENST00000544268 P0C880 135 aa8.44□□□□□ -1.06
CHFR-223ENST00000544268 Q5VSD8 79 aa8.44□□□□□ -1.06
CHFR-223ENST00000544268 TYMSOSQ8TAI1 123 aa8.44□□□□□ -1.06
CHFR-223ENST00000544268 KRTAP17-1Q9BYP8 105 aa8.43□□□□□ -1.06
CHFR-223ENST00000544268 BIRC6Q9NR09 4857 aa8.4□□□□□ -1.06
CHFR-223ENST00000544268 IGKV2-30P06310 120 aa8.39□□□□□ -1.07
CHFR-223ENST00000544268 KRTAP25-1Q3LHN0 102 aa8.39□□□□□ -1.07
CHFR-223ENST00000544268 KRTAP16-1A8MUX0 517 aa8.38□□□□□ -1.07
CHFR-223ENST00000544268 LRP1Q07954 4544 aaKnown RBP8.38□□□□□ -1.07
CHFR-223ENST00000544268 LINC00304Q8N9R0 145 aa8.33□□□□□ -1.08
CHFR-223ENST00000544268 SPINK1P00995 79 aa8.32□□□□□ -1.08
CHFR-223ENST00000544268 Q8N1X5 172 aa8.32□□□□□ -1.08
CHFR-223ENST00000544268 FLG2Q5D862 2391 aaPredicted RBP8.3□□□□□ -1.08
CHFR-223ENST00000544268 TNXBP22105 4242 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms