RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 Q6ZRN7 208 aaPredicted RBP4.96□□□□□ -1.61
PDLIM5-221ENST00000542407 DNAH6Q9C0G6 4158 aa4.96□□□□□ -1.62
PDLIM5-221ENST00000542407 NBDYA0A0U1RRE5 68 aa4.96□□□□□ -1.62
PDLIM5-221ENST00000542407 KCNQ1DNQ9H478 68 aa4.96□□□□□ -1.62
PDLIM5-221ENST00000542407 FAM168BA1KXE4 195 aa4.95□□□□□ -1.62
PDLIM5-221ENST00000542407 KMT2AQ03164 3969 aa4.95□□□□□ -1.62
PDLIM5-221ENST00000542407 DHRS4-AS1Q9P1J3 65 aa4.95□□□□□ -1.62
PDLIM5-221ENST00000542407 IGLV9-49A0A0B4J1Y8 123 aa4.95□□□□□ -1.62
PDLIM5-221ENST00000542407 SPRR4Q96PI1 79 aa4.95□□□□□ -1.62
PDLIM5-221ENST00000542407 Q6ZRX8 168 aa4.95□□□□□ -1.62
PDLIM5-221ENST00000542407 A0A087WSZ3 146 aa4.94□□□□□ -1.62
PDLIM5-221ENST00000542407 TENM2Q9NT68 2774 aa4.94□□□□□ -1.62
PDLIM5-221ENST00000542407 FBN3Q75N90 2809 aa4.93□□□□□ -1.62
PDLIM5-221ENST00000542407 PCOTHQ58A44 107 aa4.93□□□□□ -1.62
PDLIM5-221ENST00000542407 HECTD4Q9Y4D8 3996 aa4.93□□□□□ -1.62
PDLIM5-221ENST00000542407 KRTAP4-16G5E9R7 235 aaPredicted RBP4.92□□□□□ -1.62
PDLIM5-221ENST00000542407 DNAH17Q9UFH2 4485 aa4.92□□□□□ -1.62
PDLIM5-221ENST00000542407 IGLV1-50A0A075B6I6 118 aa4.92□□□□□ -1.62
PDLIM5-221ENST00000542407 A0A096LNI7 61 aa4.92□□□□□ -1.62
PDLIM5-221ENST00000542407 ALMS1Q8TCU4 4167 aa4.91□□□□□ -1.62
PDLIM5-221ENST00000542407 SPRR1AP35321 89 aa4.91□□□□□ -1.62
PDLIM5-221ENST00000542407 C14orf177Q52M58 125 aa4.9□□□□□ -1.62
PDLIM5-221ENST00000542407 KRTAP23-1A1A580 65 aa4.9□□□□□ -1.63
PDLIM5-221ENST00000542407 CHTF8P0CG12 524 aa4.9□□□□□ -1.63
PDLIM5-221ENST00000542407 IGFL1Q6UW32 110 aa4.9□□□□□ -1.63
PDLIM5-221ENST00000542407 FRAS1Q86XX4 4008 aa4.89□□□□□ -1.63
PDLIM5-221ENST00000542407 C9orf163Q8N9P6 203 aa4.88□□□□□ -1.63
PDLIM5-221ENST00000542407 KRTAP29-1A8MX34 341 aaPredicted RBP4.88□□□□□ -1.63
PDLIM5-221ENST00000542407 H3BPC8 53 aa4.87□□□□□ -1.63
PDLIM5-221ENST00000542407 IGKV2-24A0A0C4DH68 120 aa4.86□□□□□ -1.63
PDLIM5-221ENST00000542407 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.86□□□□□ -1.63
PDLIM5-221ENST00000542407 IGLV7-46A0A075B6I9 117 aa4.86□□□□□ -1.63
PDLIM5-221ENST00000542407 A8MWP4 228 aa4.86□□□□□ -1.63
PDLIM5-221ENST00000542407 PANO1I0J062 215 aa4.86□□□□□ -1.63
PDLIM5-221ENST00000542407 LUZP6Q538Z0 58 aa4.86□□□□□ -1.63
PDLIM5-221ENST00000542407 DNAH11Q96DT5 4516 aa4.85□□□□□ -1.63
PDLIM5-221ENST00000542407 A0A087WTM6 91 aa4.85□□□□□ -1.63
PDLIM5-221ENST00000542407 LINC00483Q53H64 154 aa4.85□□□□□ -1.63
PDLIM5-221ENST00000542407 KRTAP11-1Q8IUC1 163 aa4.85□□□□□ -1.63
PDLIM5-221ENST00000542407 C8orf17Q9NRJ1 99 aa4.85□□□□□ -1.63
PDLIM5-221ENST00000542407 PRLHP81277 87 aa4.85□□□□□ -1.63
PDLIM5-221ENST00000542407 KRTAP25-1Q3LHN0 102 aa4.85□□□□□ -1.63
PDLIM5-221ENST00000542407 HYDINQ4G0P3 5121 aa4.85□□□□□ -1.63
PDLIM5-221ENST00000542407 SPATA8Q6RVD6 105 aa4.83□□□□□ -1.64
PDLIM5-221ENST00000542407 DNAH8Q96JB1 4490 aa4.83□□□□□ -1.64
PDLIM5-221ENST00000542407 C20orf166-AS1Q96NR2 134 aa4.83□□□□□ -1.64
PDLIM5-221ENST00000542407 DNAH5Q8TE73 4624 aa4.83□□□□□ -1.64
PDLIM5-221ENST00000542407 FAT2Q9NYQ8 4349 aa4.83□□□□□ -1.64
PDLIM5-221ENST00000542407 NDUFAF8A1L188 74 aa4.82□□□□□ -1.64
PDLIM5-221ENST00000542407 SPACA4Q8TDM5 124 aa4.82□□□□□ -1.64
PDLIM5-221ENST00000542407 SRRM2Q9UQ35 2752 aaKnown RBP4.81□□□□□ -1.64
PDLIM5-221ENST00000542407 PKD1P98161 4303 aa4.8□□□□□ -1.64
PDLIM5-221ENST00000542407 ZNF861PO60384 105 aa4.8□□□□□ -1.64
PDLIM5-221ENST00000542407 LY6G6CO95867 125 aa4.8□□□□□ -1.64
PDLIM5-221ENST00000542407 HRES1P13985 223 aa4.8□□□□□ -1.64
PDLIM5-221ENST00000542407 TGP01266 2768 aa4.79□□□□□ -1.64
PDLIM5-221ENST00000542407 IGLV5-52A0A0A0MRZ9 124 aa4.79□□□□□ -1.64
PDLIM5-221ENST00000542407 MMP24-AS1A0A0U1RRL7 71 aa4.78□□□□□ -1.64
PDLIM5-221ENST00000542407 KRTAP13-1Q8IUC0 172 aa4.77□□□□□ -1.65
PDLIM5-221ENST00000542407 LINC00472Q9H8W2 130 aa4.77□□□□□ -1.65
PDLIM5-221ENST00000542407 SACSQ9NZJ4 4579 aa4.77□□□□□ -1.65
PDLIM5-221ENST00000542407 A8MUU9 505 aa4.76□□□□□ -1.65
PDLIM5-221ENST00000542407 K7ERS5 55 aa4.76□□□□□ -1.65
PDLIM5-221ENST00000542407 IGLV8-61A0A075B6I0 122 aa4.74□□□□□ -1.65
PDLIM5-221ENST00000542407 KRTAP10-2P60368 255 aa4.74□□□□□ -1.65
PDLIM5-221ENST00000542407 SPRR1BP22528 89 aa4.73□□□□□ -1.65
PDLIM5-221ENST00000542407 TP53AIP1Q9HCN2 124 aa4.73□□□□□ -1.65
PDLIM5-221ENST00000542407 UQCR11O14957 56 aa4.72□□□□□ -1.65
PDLIM5-221ENST00000542407 PSORS1C2Q9UIG4 136 aa4.71□□□□□ -1.66
PDLIM5-221ENST00000542407 Q6ZSA8 131 aa4.69□□□□□ -1.66
PDLIM5-221ENST00000542407 A0A1B0GU69 56 aa4.68□□□□□ -1.66
PDLIM5-221ENST00000542407 LRP1BQ9NZR2 4599 aa4.68□□□□□ -1.66
PDLIM5-221ENST00000542407 KRTAP10-1P60331 282 aa4.67□□□□□ -1.66
PDLIM5-221ENST00000542407 RYR2Q92736 4967 aa4.67□□□□□ -1.66
PDLIM5-221ENST00000542407 CIRBP-AS1Q8TBR5 109 aa4.67□□□□□ -1.66
PDLIM5-221ENST00000542407 DMAC1Q96GE9 116 aa4.67□□□□□ -1.66
PDLIM5-221ENST00000542407 ACYP2P14621 99 aa4.66□□□□□ -1.66
PDLIM5-221ENST00000542407 MRPL34Q9BQ48 92 aaKnown RBP4.65□□□□□ -1.66
PDLIM5-221ENST00000542407 PKHD1P08F94 4074 aa4.65□□□□□ -1.66
PDLIM5-221ENST00000542407 SPINT4Q6UDR6 99 aa4.65□□□□□ -1.67
PDLIM5-221ENST00000542407 A0A1B0GVX0 72 aa4.64□□□□□ -1.67
PDLIM5-221ENST00000542407 Q96NJ1 140 aa4.64□□□□□ -1.67
PDLIM5-221ENST00000542407 IGLV7-43P04211 117 aa4.64□□□□□ -1.67
PDLIM5-221ENST00000542407 Q5W150 140 aa4.63□□□□□ -1.67
PDLIM5-221ENST00000542407 SPINK6Q6UWN8 80 aa4.63□□□□□ -1.67
PDLIM5-221ENST00000542407 DYNC1H1Q14204 4646 aaKnown RBP4.62□□□□□ -1.67
PDLIM5-221ENST00000542407 VPS13BQ7Z7G8 4022 aa4.62□□□□□ -1.67
PDLIM5-221ENST00000542407 KRTAP15-1Q3LI76 137 aa4.61□□□□□ -1.67
PDLIM5-221ENST00000542407 KMT2CQ8NEZ4 4911 aaKnown RBP4.61□□□□□ -1.67
PDLIM5-221ENST00000542407 ANAPC11Q9NYG5 84 aa4.6□□□□□ -1.67
PDLIM5-221ENST00000542407 A0A1B0GVY2 172 aa4.6□□□□□ -1.67
PDLIM5-221ENST00000542407 APOBP04114 4563 aaKnown RBP4.59□□□□□ -1.67
PDLIM5-221ENST00000542407 LINC00304Q8N9R0 145 aa4.56□□□□□ -1.68
PDLIM5-221ENST00000542407 KRTAP1-4P0C5Y4 121 aa4.53□□□□□ -1.68
PDLIM5-221ENST00000542407 KRTAP13-2Q52LG2 175 aa4.53□□□□□ -1.68
PDLIM5-221ENST00000542407 KRTAP3-1Q9BYR8 98 aa4.53□□□□□ -1.68
PDLIM5-221ENST00000542407 CRIPTQ9P021 101 aa4.53□□□□□ -1.68
PDLIM5-221ENST00000542407 RYR3Q15413 4870 aa4.52□□□□□ -1.69
PDLIM5-221ENST00000542407 SPINK1P00995 79 aa4.52□□□□□ -1.69
PDLIM5-221ENST00000542407 SSBP3-AS1Q7Z2R9 100 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 146.6 ms