RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 PANO1I0J062 215 aa7.71□□□□□ -1.18
SFSWAP-209ENST00000540469 RETNLBQ9BQ08 111 aa7.71□□□□□ -1.18
SFSWAP-209ENST00000540469 ZNF706Q9Y5V0 76 aaPredicted RBP7.7□□□□□ -1.18
SFSWAP-209ENST00000540469 LINC01554Q52M75 96 aa7.68□□□□□ -1.18
SFSWAP-209ENST00000540469 Q5W150 140 aa7.68□□□□□ -1.18
SFSWAP-209ENST00000540469 CIRBP-AS1Q8TBR5 109 aa7.66□□□□□ -1.18
SFSWAP-209ENST00000540469 KRTAP13-1Q8IUC0 172 aa7.65□□□□□ -1.18
SFSWAP-209ENST00000540469 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.64□□□□□ -1.19
SFSWAP-209ENST00000540469 WWC2-AS2Q96NR7 200 aa7.63□□□□□ -1.19
SFSWAP-209ENST00000540469 MEGF8Q7Z7M0 2845 aa7.62□□□□□ -1.19
SFSWAP-209ENST00000540469 MIR22HGQ0VDD5 57 aa7.6□□□□□ -1.19
SFSWAP-209ENST00000540469 DNAH10Q8IVF4 4471 aa7.6□□□□□ -1.19
SFSWAP-209ENST00000540469 PSORS1C2Q9UIG4 136 aa7.6□□□□□ -1.19
SFSWAP-209ENST00000540469 LINC00483Q53H64 154 aa7.59□□□□□ -1.19
SFSWAP-209ENST00000540469 UQCR11O14957 56 aa7.58□□□□□ -1.2
SFSWAP-209ENST00000540469 CSAG1Q6PB30 78 aa7.58□□□□□ -1.2
SFSWAP-209ENST00000540469 CMYA5Q8N3K9 4069 aa7.58□□□□□ -1.2
SFSWAP-209ENST00000540469 NBDYA0A0U1RRE5 68 aa7.57□□□□□ -1.2
SFSWAP-209ENST00000540469 SPACA4Q8TDM5 124 aa7.57□□□□□ -1.2
SFSWAP-209ENST00000540469 FLG2Q5D862 2391 aaPredicted RBP7.57□□□□□ -1.2
SFSWAP-209ENST00000540469 PLA2G1BP04054 148 aaKnown RBP7.56□□□□□ -1.2
SFSWAP-209ENST00000540469 DMAC1Q96GE9 116 aa7.56□□□□□ -1.2
SFSWAP-209ENST00000540469 APLNQ9ULZ1 77 aa7.56□□□□□ -1.2
SFSWAP-209ENST00000540469 FBN3Q75N90 2809 aa7.55□□□□□ -1.2
SFSWAP-209ENST00000540469 ZNF861PO60384 105 aa7.55□□□□□ -1.2
SFSWAP-209ENST00000540469 FAM229AH3BQW9 127 aa7.54□□□□□ -1.2
SFSWAP-209ENST00000540469 IGLV5-52A0A0A0MRZ9 124 aa7.53□□□□□ -1.2
SFSWAP-209ENST00000540469 IGKV2D-30A0A075B6S6 120 aa7.53□□□□□ -1.2
SFSWAP-209ENST00000540469 IGKV2-30P06310 120 aa7.53□□□□□ -1.2
SFSWAP-209ENST00000540469 SPATA8Q6RVD6 105 aa7.52□□□□□ -1.21
SFSWAP-209ENST00000540469 DNAH1Q9P2D7 4330 aa7.51□□□□□ -1.21
SFSWAP-209ENST00000540469 SPINK1P00995 79 aa7.51□□□□□ -1.21
SFSWAP-209ENST00000540469 KRTAP13-3Q3SY46 172 aa7.5□□□□□ -1.21
SFSWAP-209ENST00000540469 PRKDCP78527 4128 aaKnown RBP7.48□□□□□ -1.21
SFSWAP-209ENST00000540469 RTL8CO15255 209 aa7.48□□□□□ -1.21
SFSWAP-209ENST00000540469 LYSTQ99698 3801 aa7.46□□□□□ -1.21
SFSWAP-209ENST00000540469 A0A087WTM6 91 aa7.45□□□□□ -1.22
SFSWAP-209ENST00000540469 Q6ZRN7 208 aaPredicted RBP7.44□□□□□ -1.22
SFSWAP-209ENST00000540469 HUWE1Q7Z6Z7 4374 aaKnown RBP7.43□□□□□ -1.22
SFSWAP-209ENST00000540469 IGLV7-43P04211 117 aa7.41□□□□□ -1.22
SFSWAP-209ENST00000540469 DNAH9Q9NYC9 4486 aa7.41□□□□□ -1.22
SFSWAP-209ENST00000540469 C1orf134Q5TEV5 83 aa7.4□□□□□ -1.22
SFSWAP-209ENST00000540469 SSBP3-AS1Q7Z2R9 100 aa7.4□□□□□ -1.22
SFSWAP-209ENST00000540469 NUPR2A6NF83 97 aa7.39□□□□□ -1.23
SFSWAP-209ENST00000540469 CRIPTQ9P021 101 aa7.38□□□□□ -1.23
SFSWAP-209ENST00000540469 Q8N1X5 172 aa7.35□□□□□ -1.23
SFSWAP-209ENST00000540469 DNAH3Q8TD57 4116 aa7.33□□□□□ -1.24
SFSWAP-209ENST00000540469 ALMS1Q8TCU4 4167 aa7.29□□□□□ -1.24
SFSWAP-209ENST00000540469 DMBT1Q9UGM3 2413 aaPredicted RBP7.28□□□□□ -1.24
SFSWAP-209ENST00000540469 LY6G6CO95867 125 aa7.26□□□□□ -1.25
SFSWAP-209ENST00000540469 FRAS1Q86XX4 4008 aa7.25□□□□□ -1.25
SFSWAP-209ENST00000540469 STARD9Q9P2P6 4700 aa7.25□□□□□ -1.25
SFSWAP-209ENST00000540469 DNAH7Q8WXX0 4024 aa7.24□□□□□ -1.25
SFSWAP-209ENST00000540469 PLECQ15149 4684 aaKnown RBP7.24□□□□□ -1.25
SFSWAP-209ENST00000540469 KRTAP16-1A8MUX0 517 aa7.23□□□□□ -1.25
SFSWAP-209ENST00000540469 DNAH8Q96JB1 4490 aa7.22□□□□□ -1.25
SFSWAP-209ENST00000540469 KRTAP13-2Q52LG2 175 aa7.22□□□□□ -1.25
SFSWAP-209ENST00000540469 ROMO1P60602 79 aa7.19□□□□□ -1.26
SFSWAP-209ENST00000540469 A0A1B0GU33 70 aa7.17□□□□□ -1.26
SFSWAP-209ENST00000540469 Q6ZSA8 131 aa7.17□□□□□ -1.26
SFSWAP-209ENST00000540469 KRTAP25-1Q3LHN0 102 aa7.16□□□□□ -1.26
SFSWAP-209ENST00000540469 H0YAA0 97 aa7.16□□□□□ -1.26
SFSWAP-209ENST00000540469 K7ERS5 55 aa7.16□□□□□ -1.26
SFSWAP-209ENST00000540469 KMT2AQ03164 3969 aa7.15□□□□□ -1.27
SFSWAP-209ENST00000540469 TYMSOSQ8TAI1 123 aa7.14□□□□□ -1.27
SFSWAP-209ENST00000540469 A8MUU9 505 aa7.14□□□□□ -1.27
SFSWAP-209ENST00000540469 LINC00304Q8N9R0 145 aa7.14□□□□□ -1.27
SFSWAP-209ENST00000540469 KRTAP21-3Q3LHN1 58 aa7.11□□□□□ -1.27
SFSWAP-209ENST00000540469 KRTAP10-2P60368 255 aa7.1□□□□□ -1.27
SFSWAP-209ENST00000540469 P0C880 135 aa7.07□□□□□ -1.28
SFSWAP-209ENST00000540469 H1FX-AS1Q4G0G2 97 aa7.07□□□□□ -1.28
SFSWAP-209ENST00000540469 C9orf92A6NGG3 77 aa7.06□□□□□ -1.28
SFSWAP-209ENST00000540469 DNAH17Q9UFH2 4485 aa7.05□□□□□ -1.28
SFSWAP-209ENST00000540469 HECTD4Q9Y4D8 3996 aa7.04□□□□□ -1.28
SFSWAP-209ENST00000540469 HYDINQ4G0P3 5121 aa7.02□□□□□ -1.29
SFSWAP-209ENST00000540469 KRTAP1-4P0C5Y4 121 aa7.02□□□□□ -1.29
SFSWAP-209ENST00000540469 KRTAP10-1P60331 282 aa7□□□□□ -1.29
SFSWAP-209ENST00000540469 SPINT4Q6UDR6 99 aa6.98□□□□□ -1.29
SFSWAP-209ENST00000540469 VPS13DQ5THJ4 4388 aa6.98□□□□□ -1.29
SFSWAP-209ENST00000540469 KMT2CQ8NEZ4 4911 aaKnown RBP6.97□□□□□ -1.29
SFSWAP-209ENST00000540469 DYNC2H1Q8NCM8 4307 aaKnown RBP6.96□□□□□ -1.3
SFSWAP-209ENST00000540469 COX6B2Q6YFQ2 88 aa6.93□□□□□ -1.3
SFSWAP-209ENST00000540469 A0A0D9SG42 100 aa6.92□□□□□ -1.3
SFSWAP-209ENST00000540469 DNAH2Q9P225 4427 aa6.92□□□□□ -1.3
SFSWAP-209ENST00000540469 NDUFAF8A1L188 74 aa6.92□□□□□ -1.3
SFSWAP-209ENST00000540469 KRTAP3-1Q9BYR8 98 aa6.9□□□□□ -1.3
SFSWAP-209ENST00000540469 DNAH11Q96DT5 4516 aa6.89□□□□□ -1.31
SFSWAP-209ENST00000540469 DNAH6Q9C0G6 4158 aa6.88□□□□□ -1.31
SFSWAP-209ENST00000540469 C10orf95Q9H7T3 257 aa6.86□□□□□ -1.31
SFSWAP-209ENST00000540469 RPL37P61927 97 aaKnown RBP6.85□□□□□ -1.31
SFSWAP-209ENST00000540469 LRP1BQ9NZR2 4599 aa6.83□□□□□ -1.32
SFSWAP-209ENST00000540469 SACSQ9NZJ4 4579 aa6.83□□□□□ -1.32
SFSWAP-209ENST00000540469 C20orf166-AS1Q96NR2 134 aa6.83□□□□□ -1.32
SFSWAP-209ENST00000540469 SMR3BP02814 79 aaPredicted RBP6.82□□□□□ -1.32
SFSWAP-209ENST00000540469 PKHD1P08F94 4074 aa6.79□□□□□ -1.32
SFSWAP-209ENST00000540469 RPS29P62273 56 aaKnown RBP6.79□□□□□ -1.32
SFSWAP-209ENST00000540469 DNAH5Q8TE73 4624 aa6.76□□□□□ -1.33
SFSWAP-209ENST00000540469 RYR3Q15413 4870 aa6.75□□□□□ -1.33
SFSWAP-209ENST00000540469 TPRXLQ17RH7 258 aa6.75□□□□□ -1.33
SFSWAP-209ENST00000540469 VPS13BQ7Z7G8 4022 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms