RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 CD164Q04900 197 aa6.14□□□□□ -1.43
TRAF1-202ENST00000540010 IGLV7-43P04211 117 aa6.13□□□□□ -1.43
TRAF1-202ENST00000540010 Q8N9P0 234 aaPredicted RBP6.13□□□□□ -1.43
TRAF1-202ENST00000540010 Q6ZR54 194 aa6.12□□□□□ -1.43
TRAF1-202ENST00000540010 PANO1I0J062 215 aa6.11□□□□□ -1.43
TRAF1-202ENST00000540010 C9orf92A6NGG3 77 aa6.11□□□□□ -1.43
TRAF1-202ENST00000540010 SMR3BP02814 79 aaPredicted RBP6.11□□□□□ -1.43
TRAF1-202ENST00000540010 Q8N1X5 172 aa6.11□□□□□ -1.43
TRAF1-202ENST00000540010 IGLV7-46A0A075B6I9 117 aa6.11□□□□□ -1.43
TRAF1-202ENST00000540010 MMP24-AS1A0A0U1RRL7 71 aa6.11□□□□□ -1.43
TRAF1-202ENST00000540010 CDC42SE1Q9NRR8 79 aa6.11□□□□□ -1.43
TRAF1-202ENST00000540010 KRTAP21-3Q3LHN1 58 aa6.1□□□□□ -1.43
TRAF1-202ENST00000540010 TGP01266 2768 aa6.09□□□□□ -1.43
TRAF1-202ENST00000540010 TNP2Q05952 138 aa6.08□□□□□ -1.44
TRAF1-202ENST00000540010 KRTAP11-1Q8IUC1 163 aa6.08□□□□□ -1.44
TRAF1-202ENST00000540010 LINC00472Q9H8W2 130 aa6.08□□□□□ -1.44
TRAF1-202ENST00000540010 FBN3Q75N90 2809 aa6.07□□□□□ -1.44
TRAF1-202ENST00000540010 DNHD1Q96M86 4753 aa6.07□□□□□ -1.44
TRAF1-202ENST00000540010 Q5VV11 94 aa6.06□□□□□ -1.44
TRAF1-202ENST00000540010 LYSTQ99698 3801 aa6.05□□□□□ -1.44
TRAF1-202ENST00000540010 HRES1P13985 223 aa6.05□□□□□ -1.44
TRAF1-202ENST00000540010 PRKDCP78527 4128 aaKnown RBP6.05□□□□□ -1.44
TRAF1-202ENST00000540010 LCA10Q71F78 164 aa6.04□□□□□ -1.44
TRAF1-202ENST00000540010 LINC00304Q8N9R0 145 aa6.04□□□□□ -1.44
TRAF1-202ENST00000540010 PLECQ15149 4684 aaKnown RBP6.04□□□□□ -1.44
TRAF1-202ENST00000540010 DNAH10Q8IVF4 4471 aa6.04□□□□□ -1.44
TRAF1-202ENST00000540010 CSMD3Q7Z407 3707 aa6.03□□□□□ -1.44
TRAF1-202ENST00000540010 Q75L30 129 aa6.02□□□□□ -1.45
TRAF1-202ENST00000540010 RBM12B-AS1Q9P1G2 102 aa6.01□□□□□ -1.45
TRAF1-202ENST00000540010 SPINK7P58062 85 aa6.01□□□□□ -1.45
TRAF1-202ENST00000540010 PLAC8Q9NZF1 115 aa6.01□□□□□ -1.45
TRAF1-202ENST00000540010 PRAC1Q96KF2 57 aa6□□□□□ -1.45
TRAF1-202ENST00000540010 SPRR1BP22528 89 aa6□□□□□ -1.45
TRAF1-202ENST00000540010 SPINT4Q6UDR6 99 aa6□□□□□ -1.45
TRAF1-202ENST00000540010 KRTAP10-2P60368 255 aa5.99□□□□□ -1.45
TRAF1-202ENST00000540010 STARD9Q9P2P6 4700 aa5.99□□□□□ -1.45
TRAF1-202ENST00000540010 DNAH1Q9P2D7 4330 aa5.99□□□□□ -1.45
TRAF1-202ENST00000540010 LINC01558Q9Y6Z2 57 aa5.99□□□□□ -1.45
TRAF1-202ENST00000540010 DNAH7Q8WXX0 4024 aa5.97□□□□□ -1.45
TRAF1-202ENST00000540010 DYNC2H1Q8NCM8 4307 aaKnown RBP5.96□□□□□ -1.45
TRAF1-202ENST00000540010 A0A0D9SG42 100 aa5.96□□□□□ -1.46
TRAF1-202ENST00000540010 KRTAP29-1A8MX34 341 aaPredicted RBP5.95□□□□□ -1.46
TRAF1-202ENST00000540010 ZCCHC13Q8WW36 166 aaKnown RBP5.95□□□□□ -1.46
TRAF1-202ENST00000540010 KRTAP13-1Q8IUC0 172 aa5.94□□□□□ -1.46
TRAF1-202ENST00000540010 VPS13DQ5THJ4 4388 aa5.93□□□□□ -1.46
TRAF1-202ENST00000540010 Q5W150 140 aa5.93□□□□□ -1.46
TRAF1-202ENST00000540010 SRRM2Q9UQ35 2752 aaKnown RBP5.92□□□□□ -1.46
TRAF1-202ENST00000540010 KRTAP10-1P60331 282 aa5.92□□□□□ -1.46
TRAF1-202ENST00000540010 A0A087X002 238 aa5.91□□□□□ -1.46
TRAF1-202ENST00000540010 NOTCH2NLQ7Z3S9 236 aa5.91□□□□□ -1.46
TRAF1-202ENST00000540010 A8MU10 97 aa5.9□□□□□ -1.47
TRAF1-202ENST00000540010 A0A1B0GU33 70 aa5.87□□□□□ -1.47
TRAF1-202ENST00000540010 LINC00483Q53H64 154 aa5.87□□□□□ -1.47
TRAF1-202ENST00000540010 CRIPTQ9P021 101 aa5.87□□□□□ -1.47
TRAF1-202ENST00000540010 KMT2AQ03164 3969 aa5.87□□□□□ -1.47
TRAF1-202ENST00000540010 LINC01554Q52M75 96 aa5.85□□□□□ -1.47
TRAF1-202ENST00000540010 LCE6AA0A183 80 aa5.85□□□□□ -1.47
TRAF1-202ENST00000540010 CSAG1Q6PB30 78 aa5.83□□□□□ -1.48
TRAF1-202ENST00000540010 J3QL48 77 aa5.82□□□□□ -1.48
TRAF1-202ENST00000540010 Q6ZSA8 131 aa5.81□□□□□ -1.48
TRAF1-202ENST00000540010 DMAC1Q96GE9 116 aa5.79□□□□□ -1.48
TRAF1-202ENST00000540010 DNAH2Q9P225 4427 aa5.79□□□□□ -1.48
TRAF1-202ENST00000540010 DNAH17Q9UFH2 4485 aa5.77□□□□□ -1.49
TRAF1-202ENST00000540010 HECTD4Q9Y4D8 3996 aa5.75□□□□□ -1.49
TRAF1-202ENST00000540010 ALMS1Q8TCU4 4167 aa5.75□□□□□ -1.49
TRAF1-202ENST00000540010 COX6B2Q6YFQ2 88 aa5.72□□□□□ -1.49
TRAF1-202ENST00000540010 H3BS24 57 aa5.71□□□□□ -1.5
TRAF1-202ENST00000540010 KRTAP13-2Q52LG2 175 aa5.71□□□□□ -1.5
TRAF1-202ENST00000540010 ADM2Q7Z4H4 148 aa5.7□□□□□ -1.5
TRAF1-202ENST00000540010 DNAH11Q96DT5 4516 aa5.7□□□□□ -1.5
TRAF1-202ENST00000540010 SPATA8Q6RVD6 105 aa5.69□□□□□ -1.5
TRAF1-202ENST00000540010 A6NN06 94 aa5.68□□□□□ -1.5
TRAF1-202ENST00000540010 HYDINQ4G0P3 5121 aa5.67□□□□□ -1.5
TRAF1-202ENST00000540010 DNAH6Q9C0G6 4158 aa5.66□□□□□ -1.5
TRAF1-202ENST00000540010 KRTAP1-4P0C5Y4 121 aa5.66□□□□□ -1.5
TRAF1-202ENST00000540010 DNAH8Q96JB1 4490 aa5.66□□□□□ -1.5
TRAF1-202ENST00000540010 A0A1B0GVY2 172 aa5.65□□□□□ -1.51
TRAF1-202ENST00000540010 DNAH5Q8TE73 4624 aa5.63□□□□□ -1.51
TRAF1-202ENST00000540010 FRAS1Q86XX4 4008 aa5.63□□□□□ -1.51
TRAF1-202ENST00000540010 ASB16-AS1Q495Z4 193 aa5.61□□□□□ -1.51
TRAF1-202ENST00000540010 H1FX-AS1Q4G0G2 97 aa5.61□□□□□ -1.51
TRAF1-202ENST00000540010 RPL37P61927 97 aaKnown RBP5.6□□□□□ -1.51
TRAF1-202ENST00000540010 S4R3F8 94 aa5.6□□□□□ -1.51
TRAF1-202ENST00000540010 LRP1BQ9NZR2 4599 aa5.59□□□□□ -1.51
TRAF1-202ENST00000540010 FAT2Q9NYQ8 4349 aa5.58□□□□□ -1.52
TRAF1-202ENST00000540010 SACSQ9NZJ4 4579 aa5.57□□□□□ -1.52
TRAF1-202ENST00000540010 PKD1P98161 4303 aa5.56□□□□□ -1.52
TRAF1-202ENST00000540010 CAMK2N1Q7Z7J9 78 aa5.56□□□□□ -1.52
TRAF1-202ENST00000540010 Q5VSD8 79 aa5.56□□□□□ -1.52
TRAF1-202ENST00000540010 ROMO1P60602 79 aa5.54□□□□□ -1.52
TRAF1-202ENST00000540010 R4GN34 69 aa5.52□□□□□ -1.53
TRAF1-202ENST00000540010 LUZP6Q538Z0 58 aa5.52□□□□□ -1.53
TRAF1-202ENST00000540010 PKHD1P08F94 4074 aa5.51□□□□□ -1.53
TRAF1-202ENST00000540010 DYNC1H1Q14204 4646 aaKnown RBP5.5□□□□□ -1.53
TRAF1-202ENST00000540010 VPS13BQ7Z7G8 4022 aa5.5□□□□□ -1.53
TRAF1-202ENST00000540010 RPS29P62273 56 aaKnown RBP5.49□□□□□ -1.53
TRAF1-202ENST00000540010 KRTAP10-4P60372 401 aaPredicted RBP5.46□□□□□ -1.53
TRAF1-202ENST00000540010 KRTAP25-1Q3LHN0 102 aa5.45□□□□□ -1.54
TRAF1-202ENST00000540010 M0QZ58 72 aa5.45□□□□□ -1.54
TRAF1-202ENST00000540010 RYR2Q92736 4967 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms