RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 KRTAP2-2Q9BYT5 123 aa4.14□□□□□ -1.75
USP28-202ENST00000535607 RBM12B-AS1Q9P1G2 102 aa4.14□□□□□ -1.75
USP28-202ENST00000535607 NBEAL2Q6ZNJ1 2754 aa4.14□□□□□ -1.75
USP28-202ENST00000535607 COA5Q86WW8 74 aa4.13□□□□□ -1.75
USP28-202ENST00000535607 LINC01558Q9Y6Z2 57 aa4.13□□□□□ -1.75
USP28-202ENST00000535607 HUWE1Q7Z6Z7 4374 aaKnown RBP4.12□□□□□ -1.75
USP28-202ENST00000535607 DNAH9Q9NYC9 4486 aa4.12□□□□□ -1.75
USP28-202ENST00000535607 FBN3Q75N90 2809 aa4.12□□□□□ -1.75
USP28-202ENST00000535607 A0A087WSZ3 146 aa4.12□□□□□ -1.75
USP28-202ENST00000535607 IGFL1Q6UW32 110 aa4.12□□□□□ -1.75
USP28-202ENST00000535607 LCA10Q71F78 164 aa4.12□□□□□ -1.75
USP28-202ENST00000535607 C9orf163Q8N9P6 203 aa4.12□□□□□ -1.75
USP28-202ENST00000535607 COL7A1Q02388 2944 aa4.12□□□□□ -1.75
USP28-202ENST00000535607 A6NN06 94 aa4.11□□□□□ -1.75
USP28-202ENST00000535607 ASB16-AS1Q495Z4 193 aa4.11□□□□□ -1.75
USP28-202ENST00000535607 DNAH10OSP0CZ25 163 aa4.1□□□□□ -1.75
USP28-202ENST00000535607 MOBPQ13875 183 aa4.1□□□□□ -1.75
USP28-202ENST00000535607 TENM3Q9P273 2699 aa4.1□□□□□ -1.75
USP28-202ENST00000535607 STAB2Q8WWQ8 2551 aa4.09□□□□□ -1.75
USP28-202ENST00000535607 H0Y9J4 135 aa4.09□□□□□ -1.75
USP28-202ENST00000535607 KRTAP7-1Q8IUC3 87 aa4.08□□□□□ -1.76
USP28-202ENST00000535607 DEFB131BA0A096LNP1 70 aa4.07□□□□□ -1.76
USP28-202ENST00000535607 NUPR2A6NF83 97 aa4.07□□□□□ -1.76
USP28-202ENST00000535607 SPRR1BP22528 89 aa4.07□□□□□ -1.76
USP28-202ENST00000535607 CNBPP62633 177 aaKnown RBP4.07□□□□□ -1.76
USP28-202ENST00000535607 DNAH7Q8WXX0 4024 aa4.07□□□□□ -1.76
USP28-202ENST00000535607 RPL37AP61513 92 aaKnown RBP4.06□□□□□ -1.76
USP28-202ENST00000535607 DEFB116Q30KQ4 102 aa4.06□□□□□ -1.76
USP28-202ENST00000535607 LINC00472Q9H8W2 130 aa4.06□□□□□ -1.76
USP28-202ENST00000535607 SPAG11AQ6PDA7 123 aa4.05□□□□□ -1.76
USP28-202ENST00000535607 DYNC2H1Q8NCM8 4307 aaKnown RBP4.04□□□□□ -1.76
USP28-202ENST00000535607 FAM168BA1KXE4 195 aa4.04□□□□□ -1.76
USP28-202ENST00000535607 Q6ZR54 194 aa4.04□□□□□ -1.76
USP28-202ENST00000535607 PLAC8Q9NZF1 115 aa4.04□□□□□ -1.76
USP28-202ENST00000535607 MMP24-AS1A0A0U1RRL7 71 aa4.03□□□□□ -1.76
USP28-202ENST00000535607 KRTAP16-1A8MUX0 517 aa4.03□□□□□ -1.76
USP28-202ENST00000535607 ACYP2P14621 99 aa4.02□□□□□ -1.77
USP28-202ENST00000535607 PRLHP81277 87 aa4.01□□□□□ -1.77
USP28-202ENST00000535607 PCOTHQ58A44 107 aa4.01□□□□□ -1.77
USP28-202ENST00000535607 ZNF706Q9Y5V0 76 aaPredicted RBP4.01□□□□□ -1.77
USP28-202ENST00000535607 CSMD3Q7Z407 3707 aa4□□□□□ -1.77
USP28-202ENST00000535607 IGKV2-24A0A0C4DH68 120 aa4□□□□□ -1.77
USP28-202ENST00000535607 C8orf87E5RJ46 101 aa4□□□□□ -1.77
USP28-202ENST00000535607 C8orf17Q9NRJ1 99 aa4□□□□□ -1.77
USP28-202ENST00000535607 HRES1P13985 223 aa3.99□□□□□ -1.77
USP28-202ENST00000535607 MRPL34Q9BQ48 92 aaKnown RBP3.99□□□□□ -1.77
USP28-202ENST00000535607 TGP01266 2768 aa3.98□□□□□ -1.77
USP28-202ENST00000535607 A0A1B0GVX0 72 aa3.98□□□□□ -1.77
USP28-202ENST00000535607 A8MU10 97 aa3.98□□□□□ -1.77
USP28-202ENST00000535607 APLNQ9ULZ1 77 aa3.98□□□□□ -1.77
USP28-202ENST00000535607 SPINK7P58062 85 aa3.97□□□□□ -1.77
USP28-202ENST00000535607 STARD9Q9P2P6 4700 aa3.96□□□□□ -1.78
USP28-202ENST00000535607 A0A096LNI7 61 aa3.96□□□□□ -1.78
USP28-202ENST00000535607 A0A1B0GU69 56 aa3.96□□□□□ -1.78
USP28-202ENST00000535607 LINC00313P59037 77 aa3.96□□□□□ -1.78
USP28-202ENST00000535607 LINC01554Q52M75 96 aa3.96□□□□□ -1.78
USP28-202ENST00000535607 CASC10Q5T4H9 136 aa3.96□□□□□ -1.78
USP28-202ENST00000535607 UBE2DNLQ8IWF7 75 aa3.96□□□□□ -1.78
USP28-202ENST00000535607 RETNLBQ9BQ08 111 aa3.96□□□□□ -1.78
USP28-202ENST00000535607 ALMS1Q8TCU4 4167 aa3.95□□□□□ -1.78
USP28-202ENST00000535607 IGHV6-1A0A0B4J1U7 121 aa3.95□□□□□ -1.78
USP28-202ENST00000535607 A0A0G2JQZ4 141 aa3.95□□□□□ -1.78
USP28-202ENST00000535607 A0A1W2PNN7 141 aa3.95□□□□□ -1.78
USP28-202ENST00000535607 LYSTQ99698 3801 aa3.95□□□□□ -1.78
USP28-202ENST00000535607 DNAH1Q9P2D7 4330 aa3.94□□□□□ -1.78
USP28-202ENST00000535607 UQCR11O14957 56 aa3.94□□□□□ -1.78
USP28-202ENST00000535607 VPS13DQ5THJ4 4388 aa3.94□□□□□ -1.78
USP28-202ENST00000535607 PLECQ15149 4684 aaKnown RBP3.94□□□□□ -1.78
USP28-202ENST00000535607 DNAH6Q9C0G6 4158 aa3.93□□□□□ -1.78
USP28-202ENST00000535607 SPATA8Q6RVD6 105 aa3.93□□□□□ -1.78
USP28-202ENST00000535607 TENM2Q9NT68 2774 aa3.93□□□□□ -1.78
USP28-202ENST00000535607 NBDYA0A0U1RRE5 68 aa3.91□□□□□ -1.78
USP28-202ENST00000535607 MIR22HGQ0VDD5 57 aa3.91□□□□□ -1.78
USP28-202ENST00000535607 LINC00483Q53H64 154 aa3.91□□□□□ -1.78
USP28-202ENST00000535607 DMAC1Q96GE9 116 aa3.91□□□□□ -1.78
USP28-202ENST00000535607 Q96NJ1 140 aa3.91□□□□□ -1.78
USP28-202ENST00000535607 LY6G6CO95867 125 aa3.88□□□□□ -1.79
USP28-202ENST00000535607 KRTAP13-1Q8IUC0 172 aa3.88□□□□□ -1.79
USP28-202ENST00000535607 TYMSOSQ8TAI1 123 aa3.88□□□□□ -1.79
USP28-202ENST00000535607 RTL8CO15255 209 aa3.87□□□□□ -1.79
USP28-202ENST00000535607 KMT2AQ03164 3969 aa3.86□□□□□ -1.79
USP28-202ENST00000535607 C1orf134Q5TEV5 83 aa3.85□□□□□ -1.79
USP28-202ENST00000535607 Q6ZRN7 208 aaPredicted RBP3.85□□□□□ -1.79
USP28-202ENST00000535607 SACSQ9NZJ4 4579 aa3.84□□□□□ -1.79
USP28-202ENST00000535607 KRTAP10-6P60371 365 aaPredicted RBP3.84□□□□□ -1.79
USP28-202ENST00000535607 FRAS1Q86XX4 4008 aa3.83□□□□□ -1.8
USP28-202ENST00000535607 CHTF8P0CG12 524 aa3.83□□□□□ -1.8
USP28-202ENST00000535607 SSBP3-AS1Q7Z2R9 100 aa3.83□□□□□ -1.8
USP28-202ENST00000535607 DNAH2Q9P225 4427 aa3.83□□□□□ -1.8
USP28-202ENST00000535607 KRTAP13-3Q3SY46 172 aa3.82□□□□□ -1.8
USP28-202ENST00000535607 DNAH10Q8IVF4 4471 aa3.82□□□□□ -1.8
USP28-202ENST00000535607 ZNF861PO60384 105 aa3.81□□□□□ -1.8
USP28-202ENST00000535607 SPINK6Q6UWN8 80 aa3.81□□□□□ -1.8
USP28-202ENST00000535607 SPACA4Q8TDM5 124 aa3.81□□□□□ -1.8
USP28-202ENST00000535607 DNAH17Q9UFH2 4485 aa3.8□□□□□ -1.8
USP28-202ENST00000535607 A0A087WTM6 91 aa3.8□□□□□ -1.8
USP28-202ENST00000535607 Q5W150 140 aa3.8□□□□□ -1.8
USP28-202ENST00000535607 KRTAP11-1Q8IUC1 163 aa3.8□□□□□ -1.8
USP28-202ENST00000535607 CSAG1Q6PB30 78 aa3.79□□□□□ -1.8
USP28-202ENST00000535607 FAT2Q9NYQ8 4349 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms