RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ATXN8Q156A1 80 aa5.75□□□□□ -1.49
VPS28-214ENST00000531032 BAALC-AS2P0C853 105 aa5.74□□□□□ -1.49
VPS28-214ENST00000531032 LINC00313P59037 77 aa5.74□□□□□ -1.49
VPS28-214ENST00000531032 DEFB116Q30KQ4 102 aa5.74□□□□□ -1.49
VPS28-214ENST00000531032 USH2AO75445 5202 aa5.73□□□□□ -1.49
VPS28-214ENST00000531032 LYRM7Q5U5X0 104 aa5.73□□□□□ -1.49
VPS28-214ENST00000531032 IGHV6-1A0A0B4J1U7 121 aa5.72□□□□□ -1.49
VPS28-214ENST00000531032 KRTAP9-7A8MTY7 169 aa5.72□□□□□ -1.49
VPS28-214ENST00000531032 C9JAW5 83 aa5.72□□□□□ -1.49
VPS28-214ENST00000531032 C21orf62-AS1Q17RA5 79 aa5.72□□□□□ -1.49
VPS28-214ENST00000531032 SSPOA2VEC9 5147 aa5.72□□□□□ -1.49
VPS28-214ENST00000531032 KRTAP16-1A8MUX0 517 aa5.71□□□□□ -1.5
VPS28-214ENST00000531032 MT2AP02795 61 aa5.7□□□□□ -1.5
VPS28-214ENST00000531032 MTURNQ8N3F0 131 aa5.7□□□□□ -1.5
VPS28-214ENST00000531032 LINC00472Q9H8W2 130 aa5.7□□□□□ -1.5
VPS28-214ENST00000531032 JMJD7-PLA2G4BH0Y9G9 81 aa5.69□□□□□ -1.5
VPS28-214ENST00000531032 SPCS1Q9Y6A9 102 aa5.69□□□□□ -1.5
VPS28-214ENST00000531032 C8orf87E5RJ46 101 aa5.68□□□□□ -1.5
VPS28-214ENST00000531032 J3KT08 172 aa5.68□□□□□ -1.5
VPS28-214ENST00000531032 MPLKIPQ8TAP9 179 aa5.68□□□□□ -1.5
VPS28-214ENST00000531032 A0A1B0GVX0 72 aa5.67□□□□□ -1.5
VPS28-214ENST00000531032 SMCPP49901 116 aaPredicted RBP5.67□□□□□ -1.5
VPS28-214ENST00000531032 FAM236DA0A1B0GTK5 79 aa5.66□□□□□ -1.5
VPS28-214ENST00000531032 K7EP34 96 aa5.66□□□□□ -1.5
VPS28-214ENST00000531032 MT1FP04733 61 aa5.66□□□□□ -1.5
VPS28-214ENST00000531032 FAM236CP0DP71 79 aa5.66□□□□□ -1.5
VPS28-214ENST00000531032 HRES1P13985 223 aa5.66□□□□□ -1.5
VPS28-214ENST00000531032 NOTCH2NLQ7Z3S9 236 aa5.66□□□□□ -1.5
VPS28-214ENST00000531032 PRO0461Q9UI25 63 aa5.66□□□□□ -1.5
VPS28-214ENST00000531032 NDUFB1O75438 58 aa5.65□□□□□ -1.5
VPS28-214ENST00000531032 PDE6GP18545 87 aa5.65□□□□□ -1.5
VPS28-214ENST00000531032 RBM12B-AS1Q9P1G2 102 aa5.65□□□□□ -1.5
VPS28-214ENST00000531032 LCE2BO14633 110 aa5.64□□□□□ -1.51
VPS28-214ENST00000531032 Q6ZQT0 140 aa5.64□□□□□ -1.51
VPS28-214ENST00000531032 C14orf132Q9NPU4 83 aa5.64□□□□□ -1.51
VPS28-214ENST00000531032 LOC110117498A0A087WWA1 95 aa5.63□□□□□ -1.51
VPS28-214ENST00000531032 H3BT86 120 aa5.63□□□□□ -1.51
VPS28-214ENST00000531032 KRTAP9-3Q9BYQ3 159 aa5.63□□□□□ -1.51
VPS28-214ENST00000531032 FCGBPQ9Y6R7 5405 aaPredicted RBP5.62□□□□□ -1.51
VPS28-214ENST00000531032 A0A1B0GW54 56 aa5.61□□□□□ -1.51
VPS28-214ENST00000531032 KRTAP19-1Q8IUB9 90 aa5.61□□□□□ -1.51
VPS28-214ENST00000531032 KRTAP10-10P60014 251 aa5.6□□□□□ -1.51
VPS28-214ENST00000531032 A8MWP4 228 aa5.58□□□□□ -1.52
VPS28-214ENST00000531032 NREPQ16612 68 aa5.58□□□□□ -1.52
VPS28-214ENST00000531032 GTF2H5Q6ZYL4 71 aa5.57□□□□□ -1.52
VPS28-214ENST00000531032 ZCCHC13Q8WW36 166 aaKnown RBP5.57□□□□□ -1.52
VPS28-214ENST00000531032 C8orf17Q9NRJ1 99 aa5.57□□□□□ -1.52
VPS28-214ENST00000531032 A0A1B0GV90 55 aa5.56□□□□□ -1.52
VPS28-214ENST00000531032 IGKV3D-7A0A0C4DH55 119 aa5.55□□□□□ -1.52
VPS28-214ENST00000531032 F8W1H4 67 aa5.53□□□□□ -1.52
VPS28-214ENST00000531032 Q6ZVQ6 151 aa5.53□□□□□ -1.52
VPS28-214ENST00000531032 PRR15Q8IV56 129 aa5.52□□□□□ -1.53
VPS28-214ENST00000531032 Q8N9P0 234 aaPredicted RBP5.52□□□□□ -1.53
VPS28-214ENST00000531032 SPINK7P58062 85 aa5.51□□□□□ -1.53
VPS28-214ENST00000531032 ETDBQ3ZM63 59 aa5.51□□□□□ -1.53
VPS28-214ENST00000531032 MACF1Q9UPN3 7388 aaKnown RBP5.51□□□□□ -1.53
VPS28-214ENST00000531032 SYNE2Q8WXH0 6885 aaKnown RBP5.5□□□□□ -1.53
VPS28-214ENST00000531032 BPY2O14599 106 aa5.49□□□□□ -1.53
VPS28-214ENST00000531032 NDUFS5O43920 106 aa5.49□□□□□ -1.53
VPS28-214ENST00000531032 TMEM254Q8TBM7 123 aa5.49□□□□□ -1.53
VPS28-214ENST00000531032 MMP24-AS1A0A0U1RRL7 71 aa5.48□□□□□ -1.53
VPS28-214ENST00000531032 KRTAP19-6Q3LI70 58 aa5.48□□□□□ -1.53
VPS28-214ENST00000531032 MRPL34Q9BQ48 92 aaKnown RBP5.48□□□□□ -1.53
VPS28-214ENST00000531032 hDV103S1A0JD37 113 aa5.47□□□□□ -1.53
VPS28-214ENST00000531032 K7EQZ3 153 aa5.47□□□□□ -1.53
VPS28-214ENST00000531032 WFDC13Q8IUB5 93 aa5.47□□□□□ -1.53
VPS28-214ENST00000531032 LINC00846Q9NV44 126 aa5.46□□□□□ -1.54
VPS28-214ENST00000531032 SVIPQ8NHG7 77 aa5.45□□□□□ -1.54
VPS28-214ENST00000531032 PCP4P48539 62 aa5.42□□□□□ -1.54
VPS28-214ENST00000531032 UBL5Q9BZL1 73 aa5.41□□□□□ -1.54
VPS28-214ENST00000531032 CASC2Q6XLA1 102 aa5.4□□□□□ -1.54
VPS28-214ENST00000531032 Q8N9L7 120 aa5.4□□□□□ -1.54
VPS28-214ENST00000531032 IGKV2D-30A0A075B6S6 120 aa5.38□□□□□ -1.55
VPS28-214ENST00000531032 IGKV2-30P06310 120 aa5.38□□□□□ -1.55
VPS28-214ENST00000531032 C7orf65Q6ZTY9 151 aa5.38□□□□□ -1.55
VPS28-214ENST00000531032 HCG22E2RYF7 251 aa5.37□□□□□ -1.55
VPS28-214ENST00000531032 H1FX-AS1Q4G0G2 97 aa5.34□□□□□ -1.55
VPS28-214ENST00000531032 CXCL6P80162 114 aa5.33□□□□□ -1.56
VPS28-214ENST00000531032 KRTAP6-3Q3LI67 103 aa5.32□□□□□ -1.56
VPS28-214ENST00000531032 FAM240AA0A1B0GVK7 77 aa5.31□□□□□ -1.56
VPS28-214ENST00000531032 Q5W150 140 aa5.31□□□□□ -1.56
VPS28-214ENST00000531032 ACYP1P07311 99 aa5.3□□□□□ -1.56
VPS28-214ENST00000531032 C4orf26Q17RF5 130 aa5.25□□□□□ -1.57
VPS28-214ENST00000531032 TP53AIP1Q9HCN2 124 aa5.23□□□□□ -1.57
VPS28-214ENST00000531032 LINC00643Q86TS7 51 aa5.22□□□□□ -1.57
VPS28-214ENST00000531032 J3QR89 54 aa5.2□□□□□ -1.58
VPS28-214ENST00000531032 ATP5EP2Q5VTU8 51 aa5.19□□□□□ -1.58
VPS28-214ENST00000531032 A0A087WVE0 104 aa5.17□□□□□ -1.58
VPS28-214ENST00000531032 C1orf64Q8NEQ6 169 aa5.17□□□□□ -1.58
VPS28-214ENST00000531032 S4R3F8 94 aa5.17□□□□□ -1.58
VPS28-214ENST00000531032 NEBP20929 6669 aa5.17□□□□□ -1.58
VPS28-214ENST00000531032 HIST1H4AP62805 103 aaKnown RBP5.16□□□□□ -1.58
VPS28-214ENST00000531032 C5orf47Q569G3 176 aa5.16□□□□□ -1.58
VPS28-214ENST00000531032 FAM236AA0A1B0GUQ0 79 aa5.15□□□□□ -1.59
VPS28-214ENST00000531032 FAM236BA0A1B0GV22 79 aa5.15□□□□□ -1.59
VPS28-214ENST00000531032 K7ERU9 68 aa5.15□□□□□ -1.59
VPS28-214ENST00000531032 MT1BP07438 61 aa5.15□□□□□ -1.59
VPS28-214ENST00000531032 A6NN06 94 aa5.14□□□□□ -1.59
VPS28-214ENST00000531032 SCGB1A1P11684 91 aa5.14□□□□□ -1.59
VPS28-214ENST00000531032 TRAV22A0A0B4J277 110 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 112.3 ms