RNA–Protein interactions for RNA: ENST00000523867.5

HDAC9-227, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best)

Gene HDAC9, Length 2,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-227ENST00000523867 CIRBP-AS1Q8TBR5 109 aa4.51□□□□□ -1.69
HDAC9-227ENST00000523867 PRLHP81277 87 aa4.51□□□□□ -1.69
HDAC9-227ENST00000523867 MGAM2Q2M2H8 2515 aa4.5□□□□□ -1.69
HDAC9-227ENST00000523867 A0A087WSZ3 146 aa4.5□□□□□ -1.69
HDAC9-227ENST00000523867 IGKV2-24A0A0C4DH68 120 aa4.5□□□□□ -1.69
HDAC9-227ENST00000523867 WWC2-AS2Q96NR7 200 aa4.5□□□□□ -1.69
HDAC9-227ENST00000523867 A0A096LNI7 61 aa4.49□□□□□ -1.69
HDAC9-227ENST00000523867 CSAG1Q6PB30 78 aa4.49□□□□□ -1.69
HDAC9-227ENST00000523867 PCOTHQ58A44 107 aa4.48□□□□□ -1.69
HDAC9-227ENST00000523867 CMYA5Q8N3K9 4069 aa4.48□□□□□ -1.69
HDAC9-227ENST00000523867 MIR22HGQ0VDD5 57 aa4.48□□□□□ -1.69
HDAC9-227ENST00000523867 K7ERS5 55 aa4.47□□□□□ -1.69
HDAC9-227ENST00000523867 MMP24-AS1A0A0U1RRL7 71 aa4.47□□□□□ -1.69
HDAC9-227ENST00000523867 LINC00472Q9H8W2 130 aa4.47□□□□□ -1.69
HDAC9-227ENST00000523867 PRKDCP78527 4128 aaKnown RBP4.46□□□□□ -1.7
HDAC9-227ENST00000523867 TENM2Q9NT68 2774 aa4.45□□□□□ -1.7
HDAC9-227ENST00000523867 STAB2Q8WWQ8 2551 aa4.45□□□□□ -1.7
HDAC9-227ENST00000523867 UQCR11O14957 56 aa4.44□□□□□ -1.7
HDAC9-227ENST00000523867 ACYP2P14621 99 aa4.44□□□□□ -1.7
HDAC9-227ENST00000523867 KRTAP1-5Q9BYS1 174 aa4.44□□□□□ -1.7
HDAC9-227ENST00000523867 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.44□□□□□ -1.7
HDAC9-227ENST00000523867 A0A1B0GU69 56 aa4.43□□□□□ -1.7
HDAC9-227ENST00000523867 DNAH1Q9P2D7 4330 aa4.43□□□□□ -1.7
HDAC9-227ENST00000523867 TGP01266 2768 aa4.43□□□□□ -1.7
HDAC9-227ENST00000523867 A0A1B0GVX0 72 aa4.43□□□□□ -1.7
HDAC9-227ENST00000523867 SPRR1BP22528 89 aa4.42□□□□□ -1.7
HDAC9-227ENST00000523867 KRTAP11-1Q8IUC1 163 aa4.42□□□□□ -1.7
HDAC9-227ENST00000523867 COL7A1Q02388 2944 aa4.42□□□□□ -1.7
HDAC9-227ENST00000523867 LYSTQ99698 3801 aa4.42□□□□□ -1.7
HDAC9-227ENST00000523867 A8MUU9 505 aa4.42□□□□□ -1.7
HDAC9-227ENST00000523867 K7EIL1 84 aa4.42□□□□□ -1.7
HDAC9-227ENST00000523867 C14orf177Q52M58 125 aa4.42□□□□□ -1.7
HDAC9-227ENST00000523867 UBE2DNLQ8IWF7 75 aa4.42□□□□□ -1.7
HDAC9-227ENST00000523867 C20orf166-AS1Q96NR2 134 aa4.42□□□□□ -1.7
HDAC9-227ENST00000523867 ZNF861PO60384 105 aa4.4□□□□□ -1.7
HDAC9-227ENST00000523867 CSMD3Q7Z407 3707 aa4.4□□□□□ -1.71
HDAC9-227ENST00000523867 NDUFAF8A1L188 74 aa4.4□□□□□ -1.71
HDAC9-227ENST00000523867 DNAH3Q8TD57 4116 aa4.38□□□□□ -1.71
HDAC9-227ENST00000523867 SRRM2Q9UQ35 2752 aaKnown RBP4.38□□□□□ -1.71
HDAC9-227ENST00000523867 KRTAP25-1Q3LHN0 102 aa4.37□□□□□ -1.71
HDAC9-227ENST00000523867 DNAH10Q8IVF4 4471 aa4.37□□□□□ -1.71
HDAC9-227ENST00000523867 HUWE1Q7Z6Z7 4374 aaKnown RBP4.37□□□□□ -1.71
HDAC9-227ENST00000523867 APLNQ9ULZ1 77 aa4.37□□□□□ -1.71
HDAC9-227ENST00000523867 DMAC1Q96GE9 116 aa4.36□□□□□ -1.71
HDAC9-227ENST00000523867 ALMS1Q8TCU4 4167 aa4.36□□□□□ -1.71
HDAC9-227ENST00000523867 KMT2CQ8NEZ4 4911 aaKnown RBP4.35□□□□□ -1.71
HDAC9-227ENST00000523867 LINC00483Q53H64 154 aa4.35□□□□□ -1.71
HDAC9-227ENST00000523867 KRTAP13-1Q8IUC0 172 aa4.35□□□□□ -1.71
HDAC9-227ENST00000523867 RYR3Q15413 4870 aa4.34□□□□□ -1.71
HDAC9-227ENST00000523867 PANO1I0J062 215 aa4.34□□□□□ -1.71
HDAC9-227ENST00000523867 MRPL34Q9BQ48 92 aaKnown RBP4.34□□□□□ -1.71
HDAC9-227ENST00000523867 CAMK2N1Q7Z7J9 78 aa4.33□□□□□ -1.72
HDAC9-227ENST00000523867 Q96NJ1 140 aa4.33□□□□□ -1.72
HDAC9-227ENST00000523867 DNAH9Q9NYC9 4486 aa4.33□□□□□ -1.72
HDAC9-227ENST00000523867 NBDYA0A0U1RRE5 68 aa4.32□□□□□ -1.72
HDAC9-227ENST00000523867 DYNC2H1Q8NCM8 4307 aaKnown RBP4.31□□□□□ -1.72
HDAC9-227ENST00000523867 DNAH7Q8WXX0 4024 aa4.31□□□□□ -1.72
HDAC9-227ENST00000523867 KRTAP13-3Q3SY46 172 aa4.3□□□□□ -1.72
HDAC9-227ENST00000523867 SPACA4Q8TDM5 124 aa4.3□□□□□ -1.72
HDAC9-227ENST00000523867 IGLV7-43P04211 117 aa4.3□□□□□ -1.72
HDAC9-227ENST00000523867 BIRC6Q9NR09 4857 aa4.3□□□□□ -1.72
HDAC9-227ENST00000523867 Q6ZRN7 208 aaPredicted RBP4.29□□□□□ -1.72
HDAC9-227ENST00000523867 Q8N1X5 172 aa4.27□□□□□ -1.73
HDAC9-227ENST00000523867 NUPR2A6NF83 97 aa4.26□□□□□ -1.73
HDAC9-227ENST00000523867 ANAPC11Q9NYG5 84 aa4.26□□□□□ -1.73
HDAC9-227ENST00000523867 PSORS1C2Q9UIG4 136 aa4.26□□□□□ -1.73
HDAC9-227ENST00000523867 RYR2Q92736 4967 aa4.26□□□□□ -1.73
HDAC9-227ENST00000523867 A0A087WTM6 91 aa4.25□□□□□ -1.73
HDAC9-227ENST00000523867 Q5W150 140 aa4.24□□□□□ -1.73
HDAC9-227ENST00000523867 SPINK6Q6UWN8 80 aa4.23□□□□□ -1.73
HDAC9-227ENST00000523867 PLECQ15149 4684 aaKnown RBP4.22□□□□□ -1.73
HDAC9-227ENST00000523867 LINC00304Q8N9R0 145 aa4.22□□□□□ -1.73
HDAC9-227ENST00000523867 SACSQ9NZJ4 4579 aa4.21□□□□□ -1.74
HDAC9-227ENST00000523867 LY6G6CO95867 125 aa4.2□□□□□ -1.74
HDAC9-227ENST00000523867 EPPK1P58107 5090 aaKnown RBP4.18□□□□□ -1.74
HDAC9-227ENST00000523867 IGKV2-30P06310 120 aa4.18□□□□□ -1.74
HDAC9-227ENST00000523867 STARD9Q9P2P6 4700 aa4.17□□□□□ -1.74
HDAC9-227ENST00000523867 KMT2AQ03164 3969 aa4.16□□□□□ -1.74
HDAC9-227ENST00000523867 SSBP3-AS1Q7Z2R9 100 aa4.16□□□□□ -1.74
HDAC9-227ENST00000523867 KRTAP17-1Q9BYP8 105 aa4.16□□□□□ -1.74
HDAC9-227ENST00000523867 DNAH8Q96JB1 4490 aa4.16□□□□□ -1.74
HDAC9-227ENST00000523867 FRAS1Q86XX4 4008 aa4.14□□□□□ -1.75
HDAC9-227ENST00000523867 H0YAA0 97 aa4.13□□□□□ -1.75
HDAC9-227ENST00000523867 VPS13DQ5THJ4 4388 aa4.13□□□□□ -1.75
HDAC9-227ENST00000523867 HECTD4Q9Y4D8 3996 aa4.12□□□□□ -1.75
HDAC9-227ENST00000523867 IGKV2D-30A0A075B6S6 120 aa4.12□□□□□ -1.75
HDAC9-227ENST00000523867 Q6ZSA8 131 aa4.12□□□□□ -1.75
HDAC9-227ENST00000523867 HERC2O95714 4834 aa4.11□□□□□ -1.75
HDAC9-227ENST00000523867 DNAH2Q9P225 4427 aa4.1□□□□□ -1.75
HDAC9-227ENST00000523867 KRTAP15-1Q3LI76 137 aa4.1□□□□□ -1.75
HDAC9-227ENST00000523867 SPINT4Q6UDR6 99 aa4.1□□□□□ -1.75
HDAC9-227ENST00000523867 DNAH17Q9UFH2 4485 aa4.1□□□□□ -1.75
HDAC9-227ENST00000523867 SPINK1P00995 79 aa4.08□□□□□ -1.76
HDAC9-227ENST00000523867 A0A1B0GU33 70 aa4.08□□□□□ -1.76
HDAC9-227ENST00000523867 KRTAP13-2Q52LG2 175 aa4.08□□□□□ -1.76
HDAC9-227ENST00000523867 CRIPTQ9P021 101 aa4.07□□□□□ -1.76
HDAC9-227ENST00000523867 KRTAP10-2P60368 255 aa4.07□□□□□ -1.76
HDAC9-227ENST00000523867 FLG2Q5D862 2391 aaPredicted RBP4.07□□□□□ -1.76
HDAC9-227ENST00000523867 HYDINQ4G0P3 5121 aa4.05□□□□□ -1.76
HDAC9-227ENST00000523867 DNAH6Q9C0G6 4158 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms