RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 SPINK1P00995 79 aa5.98□□□□□ -1.45
MCF2-209ENST00000520602 SPANXA2-OT1Q8N9U9 137 aa5.95□□□□□ -1.46
MCF2-209ENST00000520602 ZCCHC13Q8WW36 166 aaKnown RBP5.95□□□□□ -1.46
MCF2-209ENST00000520602 C9orf92A6NGG3 77 aa5.95□□□□□ -1.46
MCF2-209ENST00000520602 ACYP2P14621 99 aa5.94□□□□□ -1.46
MCF2-209ENST00000520602 CYP4F30PQ9H0H9 118 aa5.94□□□□□ -1.46
MCF2-209ENST00000520602 C1orf195Q5TG92 126 aa5.94□□□□□ -1.46
MCF2-209ENST00000520602 ANK2Q01484 3957 aa5.94□□□□□ -1.46
MCF2-209ENST00000520602 PRO0628Q9UI54 55 aa5.93□□□□□ -1.46
MCF2-209ENST00000520602 DMBT1Q9UGM3 2413 aaPredicted RBP5.93□□□□□ -1.46
MCF2-209ENST00000520602 C7orf65Q6ZTY9 151 aa5.92□□□□□ -1.46
MCF2-209ENST00000520602 LCE6AA0A183 80 aa5.92□□□□□ -1.46
MCF2-209ENST00000520602 Q8N9P0 234 aaPredicted RBP5.92□□□□□ -1.46
MCF2-209ENST00000520602 IGLV7-46A0A075B6I9 117 aa5.91□□□□□ -1.46
MCF2-209ENST00000520602 KRTAP13-2Q52LG2 175 aa5.91□□□□□ -1.46
MCF2-209ENST00000520602 SVIPQ8NHG7 77 aa5.9□□□□□ -1.46
MCF2-209ENST00000520602 SEC61GP60059 68 aa5.88□□□□□ -1.47
MCF2-209ENST00000520602 Q5W150 140 aa5.88□□□□□ -1.47
MCF2-209ENST00000520602 DNAH9Q9NYC9 4486 aa5.88□□□□□ -1.47
MCF2-209ENST00000520602 FLG2Q5D862 2391 aaPredicted RBP5.86□□□□□ -1.47
MCF2-209ENST00000520602 HRES1P13985 223 aa5.86□□□□□ -1.47
MCF2-209ENST00000520602 PMAIP1Q13794 54 aa5.85□□□□□ -1.47
MCF2-209ENST00000520602 Q6ZSA8 131 aa5.85□□□□□ -1.47
MCF2-209ENST00000520602 DNAH10Q8IVF4 4471 aa5.85□□□□□ -1.47
MCF2-209ENST00000520602 Q1T7F1 81 aa5.84□□□□□ -1.47
MCF2-209ENST00000520602 KRTAP21-3Q3LHN1 58 aa5.84□□□□□ -1.47
MCF2-209ENST00000520602 A0A1B0GU69 56 aa5.83□□□□□ -1.48
MCF2-209ENST00000520602 Q8N1X5 172 aa5.83□□□□□ -1.48
MCF2-209ENST00000520602 PLECQ15149 4684 aaKnown RBP5.82□□□□□ -1.48
MCF2-209ENST00000520602 KRTAP1-4P0C5Y4 121 aa5.79□□□□□ -1.48
MCF2-209ENST00000520602 ASB16-AS1Q495Z4 193 aa5.79□□□□□ -1.48
MCF2-209ENST00000520602 CMYA5Q8N3K9 4069 aa5.77□□□□□ -1.49
MCF2-209ENST00000520602 ATP11AUNQ6ZP68 121 aa5.76□□□□□ -1.49
MCF2-209ENST00000520602 Q5VV11 94 aa5.74□□□□□ -1.49
MCF2-209ENST00000520602 DNHD1Q96M86 4753 aa5.73□□□□□ -1.49
MCF2-209ENST00000520602 DNAH3Q8TD57 4116 aa5.73□□□□□ -1.49
MCF2-209ENST00000520602 LYSTQ99698 3801 aa5.72□□□□□ -1.49
MCF2-209ENST00000520602 Q5VSD8 79 aa5.72□□□□□ -1.49
MCF2-209ENST00000520602 PRKDCP78527 4128 aaKnown RBP5.72□□□□□ -1.49
MCF2-209ENST00000520602 STARD9Q9P2P6 4700 aa5.72□□□□□ -1.49
MCF2-209ENST00000520602 LINC01558Q9Y6Z2 57 aa5.69□□□□□ -1.5
MCF2-209ENST00000520602 DNAH1Q9P2D7 4330 aa5.68□□□□□ -1.5
MCF2-209ENST00000520602 DMAC1Q96GE9 116 aa5.68□□□□□ -1.5
MCF2-209ENST00000520602 Q75L30 129 aa5.67□□□□□ -1.5
MCF2-209ENST00000520602 SPINK7P58062 85 aa5.67□□□□□ -1.5
MCF2-209ENST00000520602 UQCR11O14957 56 aa5.65□□□□□ -1.51
MCF2-209ENST00000520602 CDC42SE1Q9NRR8 79 aa5.63□□□□□ -1.51
MCF2-209ENST00000520602 VPS13DQ5THJ4 4388 aa5.63□□□□□ -1.51
MCF2-209ENST00000520602 A8MU10 97 aa5.62□□□□□ -1.51
MCF2-209ENST00000520602 MIR22HGQ0VDD5 57 aa5.62□□□□□ -1.51
MCF2-209ENST00000520602 RPS29P62273 56 aaKnown RBP5.61□□□□□ -1.51
MCF2-209ENST00000520602 KMT2AQ03164 3969 aa5.61□□□□□ -1.51
MCF2-209ENST00000520602 KRTAP16-1A8MUX0 517 aa5.6□□□□□ -1.51
MCF2-209ENST00000520602 DNAH7Q8WXX0 4024 aa5.6□□□□□ -1.51
MCF2-209ENST00000520602 DNAH11Q96DT5 4516 aa5.6□□□□□ -1.51
MCF2-209ENST00000520602 K7ERS5 55 aa5.58□□□□□ -1.52
MCF2-209ENST00000520602 A0A1B0GVY2 172 aa5.58□□□□□ -1.52
MCF2-209ENST00000520602 LCA10Q71F78 164 aa5.57□□□□□ -1.52
MCF2-209ENST00000520602 J3QL48 77 aa5.56□□□□□ -1.52
MCF2-209ENST00000520602 KRTAP13-3Q3SY46 172 aa5.56□□□□□ -1.52
MCF2-209ENST00000520602 DNAH17Q9UFH2 4485 aa5.51□□□□□ -1.53
MCF2-209ENST00000520602 A8MUU9 505 aa5.51□□□□□ -1.53
MCF2-209ENST00000520602 C20orf166-AS1Q96NR2 134 aa5.5□□□□□ -1.53
MCF2-209ENST00000520602 A0A1B0GU33 70 aa5.48□□□□□ -1.53
MCF2-209ENST00000520602 COX6B2Q6YFQ2 88 aa5.47□□□□□ -1.53
MCF2-209ENST00000520602 KTN1-AS1Q86SY8 53 aa5.47□□□□□ -1.53
MCF2-209ENST00000520602 LRP1BQ9NZR2 4599 aa5.46□□□□□ -1.54
MCF2-209ENST00000520602 DNAH2Q9P225 4427 aa5.46□□□□□ -1.54
MCF2-209ENST00000520602 DNAH8Q96JB1 4490 aa5.46□□□□□ -1.54
MCF2-209ENST00000520602 DNAH5Q8TE73 4624 aa5.45□□□□□ -1.54
MCF2-209ENST00000520602 DYNC2H1Q8NCM8 4307 aaKnown RBP5.44□□□□□ -1.54
MCF2-209ENST00000520602 A0A0D9SG42 100 aa5.44□□□□□ -1.54
MCF2-209ENST00000520602 RBM12B-AS1Q9P1G2 102 aa5.44□□□□□ -1.54
MCF2-209ENST00000520602 FRAS1Q86XX4 4008 aa5.41□□□□□ -1.54
MCF2-209ENST00000520602 S4R3F8 94 aa5.41□□□□□ -1.54
MCF2-209ENST00000520602 RPL37P61927 97 aaKnown RBP5.4□□□□□ -1.54
MCF2-209ENST00000520602 DNAH6Q9C0G6 4158 aa5.4□□□□□ -1.55
MCF2-209ENST00000520602 HECTD4Q9Y4D8 3996 aa5.39□□□□□ -1.55
MCF2-209ENST00000520602 KRTAP10-8P60410 259 aa5.39□□□□□ -1.55
MCF2-209ENST00000520602 PRAC1Q96KF2 57 aa5.39□□□□□ -1.55
MCF2-209ENST00000520602 FAT1Q14517 4588 aa5.38□□□□□ -1.55
MCF2-209ENST00000520602 SPATA8Q6RVD6 105 aa5.38□□□□□ -1.55
MCF2-209ENST00000520602 KRTAP10-4P60372 401 aaPredicted RBP5.38□□□□□ -1.55
MCF2-209ENST00000520602 XP32Q5T750 250 aa5.38□□□□□ -1.55
MCF2-209ENST00000520602 ALMS1Q8TCU4 4167 aa5.37□□□□□ -1.55
MCF2-209ENST00000520602 HYDINQ4G0P3 5121 aa5.36□□□□□ -1.55
MCF2-209ENST00000520602 H1FX-AS1Q4G0G2 97 aa5.35□□□□□ -1.55
MCF2-209ENST00000520602 DYNC1H1Q14204 4646 aaKnown RBP5.34□□□□□ -1.55
MCF2-209ENST00000520602 A6NN06 94 aa5.34□□□□□ -1.56
MCF2-209ENST00000520602 LINC01554Q52M75 96 aa5.32□□□□□ -1.56
MCF2-209ENST00000520602 CSAG1Q6PB30 78 aa5.32□□□□□ -1.56
MCF2-209ENST00000520602 SPINT4Q6UDR6 99 aa5.31□□□□□ -1.56
MCF2-209ENST00000520602 VPS13BQ7Z7G8 4022 aa5.3□□□□□ -1.56
MCF2-209ENST00000520602 SEC61BP60468 96 aaKnown RBP5.29□□□□□ -1.56
MCF2-209ENST00000520602 KRTAP3-1Q9BYR8 98 aa5.28□□□□□ -1.56
MCF2-209ENST00000520602 ADM2Q7Z4H4 148 aa5.27□□□□□ -1.57
MCF2-209ENST00000520602 CRIPTQ9P021 101 aa5.26□□□□□ -1.57
MCF2-209ENST00000520602 PKHD1P08F94 4074 aa5.24□□□□□ -1.57
MCF2-209ENST00000520602 SACSQ9NZJ4 4579 aa5.22□□□□□ -1.57
MCF2-209ENST00000520602 H0YAA0 97 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms