RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 PRAC1Q96KF2 57 aa7.18□□□□□ -1.26
SYNPO-204ENST00000519664 Q8N1X5 172 aa7.16□□□□□ -1.26
SYNPO-204ENST00000519664 NBPF19A0A087WUL8 3843 aa7.13□□□□□ -1.27
SYNPO-204ENST00000519664 MMP24-AS1A0A0U1RRL7 71 aa7.13□□□□□ -1.27
SYNPO-204ENST00000519664 KRTAP4-16G5E9R7 235 aaPredicted RBP7.12□□□□□ -1.27
SYNPO-204ENST00000519664 LINC00472Q9H8W2 130 aa7.12□□□□□ -1.27
SYNPO-204ENST00000519664 ZCCHC13Q8WW36 166 aaKnown RBP7.12□□□□□ -1.27
SYNPO-204ENST00000519664 SPINK7P58062 85 aa7.11□□□□□ -1.27
SYNPO-204ENST00000519664 TENM2Q9NT68 2774 aa7.1□□□□□ -1.27
SYNPO-204ENST00000519664 TGP01266 2768 aa7.09□□□□□ -1.27
SYNPO-204ENST00000519664 KRTAP11-1Q8IUC1 163 aa7.09□□□□□ -1.27
SYNPO-204ENST00000519664 PLAC8Q9NZF1 115 aa7.07□□□□□ -1.28
SYNPO-204ENST00000519664 A6NN06 94 aa7.07□□□□□ -1.28
SYNPO-204ENST00000519664 KRTAP7-1Q8IUC3 87 aa7.07□□□□□ -1.28
SYNPO-204ENST00000519664 SPRR1BP22528 89 aa7.06□□□□□ -1.28
SYNPO-204ENST00000519664 HRES1P13985 223 aa7.05□□□□□ -1.28
SYNPO-204ENST00000519664 KRTAP10-2P60368 255 aa7.04□□□□□ -1.28
SYNPO-204ENST00000519664 LCE6AA0A183 80 aa7.03□□□□□ -1.28
SYNPO-204ENST00000519664 SRRM2Q9UQ35 2752 aaKnown RBP7.03□□□□□ -1.28
SYNPO-204ENST00000519664 ASB16-AS1Q495Z4 193 aa7.01□□□□□ -1.29
SYNPO-204ENST00000519664 CSAG1Q6PB30 78 aa7.01□□□□□ -1.29
SYNPO-204ENST00000519664 A8MU10 97 aa7□□□□□ -1.29
SYNPO-204ENST00000519664 KRTAP10-1P60331 282 aa6.98□□□□□ -1.29
SYNPO-204ENST00000519664 A0A087X002 238 aa6.97□□□□□ -1.29
SYNPO-204ENST00000519664 NOTCH2NLQ7Z3S9 236 aa6.97□□□□□ -1.29
SYNPO-204ENST00000519664 BSNQ9UPA5 3926 aa6.97□□□□□ -1.29
SYNPO-204ENST00000519664 A0A0D9SG42 100 aa6.94□□□□□ -1.3
SYNPO-204ENST00000519664 Q5W150 140 aa6.94□□□□□ -1.3
SYNPO-204ENST00000519664 KRTAP29-1A8MX34 341 aaPredicted RBP6.93□□□□□ -1.3
SYNPO-204ENST00000519664 CRIPTQ9P021 101 aa6.89□□□□□ -1.31
SYNPO-204ENST00000519664 Q6ZR54 194 aa6.89□□□□□ -1.31
SYNPO-204ENST00000519664 Q6ZRN7 208 aaPredicted RBP6.89□□□□□ -1.31
SYNPO-204ENST00000519664 J3QL48 77 aa6.88□□□□□ -1.31
SYNPO-204ENST00000519664 LINC00483Q53H64 154 aa6.86□□□□□ -1.31
SYNPO-204ENST00000519664 TRRAPQ9Y4A5 3859 aa6.83□□□□□ -1.32
SYNPO-204ENST00000519664 SPATA8Q6RVD6 105 aa6.82□□□□□ -1.32
SYNPO-204ENST00000519664 COX6B2Q6YFQ2 88 aa6.81□□□□□ -1.32
SYNPO-204ENST00000519664 LUZP6Q538Z0 58 aa6.81□□□□□ -1.32
SYNPO-204ENST00000519664 ADM2Q7Z4H4 148 aa6.81□□□□□ -1.32
SYNPO-204ENST00000519664 A0A1B0GU33 70 aa6.79□□□□□ -1.32
SYNPO-204ENST00000519664 DMAC1Q96GE9 116 aa6.77□□□□□ -1.32
SYNPO-204ENST00000519664 KRTAP13-1Q8IUC0 172 aa6.76□□□□□ -1.33
SYNPO-204ENST00000519664 FBN3Q75N90 2809 aa6.75□□□□□ -1.33
SYNPO-204ENST00000519664 VPS13CQ709C8 3753 aa6.72□□□□□ -1.33
SYNPO-204ENST00000519664 Q6ZSA8 131 aa6.72□□□□□ -1.33
SYNPO-204ENST00000519664 KRTAP13-2Q52LG2 175 aa6.71□□□□□ -1.33
SYNPO-204ENST00000519664 Q5VSD8 79 aa6.67□□□□□ -1.34
SYNPO-204ENST00000519664 KRTAP25-1Q3LHN0 102 aa6.66□□□□□ -1.34
SYNPO-204ENST00000519664 A0A0A0MQY5 61 aa6.65□□□□□ -1.34
SYNPO-204ENST00000519664 COL7A1Q02388 2944 aa6.65□□□□□ -1.35
SYNPO-204ENST00000519664 ROMO1P60602 79 aa6.61□□□□□ -1.35
SYNPO-204ENST00000519664 KRTAP16-1A8MUX0 517 aa6.59□□□□□ -1.36
SYNPO-204ENST00000519664 S4R3F8 94 aa6.58□□□□□ -1.36
SYNPO-204ENST00000519664 MEGF8Q7Z7M0 2845 aa6.54□□□□□ -1.36
SYNPO-204ENST00000519664 H1FX-AS1Q4G0G2 97 aa6.54□□□□□ -1.36
SYNPO-204ENST00000519664 RPL37P61927 97 aaKnown RBP6.51□□□□□ -1.37
SYNPO-204ENST00000519664 CAMK2N1Q7Z7J9 78 aa6.49□□□□□ -1.37
SYNPO-204ENST00000519664 ZNF469Q96JG9 3925 aaPredicted RBP6.49□□□□□ -1.37
SYNPO-204ENST00000519664 KRTAP21-3Q3LHN1 58 aa6.49□□□□□ -1.37
SYNPO-204ENST00000519664 R4GN34 69 aa6.47□□□□□ -1.37
SYNPO-204ENST00000519664 ANK3Q12955 4377 aaKnown RBP6.46□□□□□ -1.37
SYNPO-204ENST00000519664 NDUFAF8A1L188 74 aa6.46□□□□□ -1.38
SYNPO-204ENST00000519664 AKAP9Q99996 3911 aa6.45□□□□□ -1.38
SYNPO-204ENST00000519664 KRTAP1-4P0C5Y4 121 aa6.45□□□□□ -1.38
SYNPO-204ENST00000519664 CSMD3Q7Z407 3707 aa6.45□□□□□ -1.38
SYNPO-204ENST00000519664 A8MUU9 505 aa6.44□□□□□ -1.38
SYNPO-204ENST00000519664 M0R2T5 61 aa6.43□□□□□ -1.38
SYNPO-204ENST00000519664 M0QZ58 72 aa6.39□□□□□ -1.39
SYNPO-204ENST00000519664 SEC61BP60468 96 aaKnown RBP6.37□□□□□ -1.39
SYNPO-204ENST00000519664 RPS29P62273 56 aaKnown RBP6.36□□□□□ -1.39
SYNPO-204ENST00000519664 C20orf166-AS1Q96NR2 134 aa6.3□□□□□ -1.4
SYNPO-204ENST00000519664 H0YAA0 97 aa6.22□□□□□ -1.41
SYNPO-204ENST00000519664 XP32Q5T750 250 aa6.17□□□□□ -1.42
SYNPO-204ENST00000519664 KRTAP13-3Q3SY46 172 aa6.17□□□□□ -1.42
SYNPO-204ENST00000519664 C10orf95Q9H7T3 257 aa6.09□□□□□ -1.43
SYNPO-204ENST00000519664 P0C880 135 aa6.06□□□□□ -1.44
SYNPO-204ENST00000519664 A0A1B0GVY2 172 aa5.99□□□□□ -1.45
SYNPO-204ENST00000519664 PLAC4Q8WY50 150 aa5.99□□□□□ -1.45
SYNPO-204ENST00000519664 HUWE1Q7Z6Z7 4374 aaKnown RBP5.97□□□□□ -1.45
SYNPO-204ENST00000519664 KRTAP10-8P60410 259 aa5.96□□□□□ -1.46
SYNPO-204ENST00000519664 KRTAP3-1Q9BYR8 98 aa5.93□□□□□ -1.46
SYNPO-204ENST00000519664 TPRXLQ17RH7 258 aa5.91□□□□□ -1.46
SYNPO-204ENST00000519664 DNHD1Q96M86 4753 aa5.83□□□□□ -1.48
SYNPO-204ENST00000519664 TNP1P09430 55 aa5.81□□□□□ -1.48
SYNPO-204ENST00000519664 PP632Q6XCG6 107 aa5.8□□□□□ -1.48
SYNPO-204ENST00000519664 DNAH10Q8IVF4 4471 aa5.79□□□□□ -1.48
SYNPO-204ENST00000519664 KRTAP12-2P59991 146 aa5.78□□□□□ -1.48
SYNPO-204ENST00000519664 PLECQ15149 4684 aaKnown RBP5.77□□□□□ -1.49
SYNPO-204ENST00000519664 DNAH9Q9NYC9 4486 aa5.75□□□□□ -1.49
SYNPO-204ENST00000519664 DNAH11Q96DT5 4516 aa5.75□□□□□ -1.49
SYNPO-204ENST00000519664 CMYA5Q8N3K9 4069 aa5.74□□□□□ -1.49
SYNPO-204ENST00000519664 KRTAP13-4Q3LI77 160 aa5.73□□□□□ -1.49
SYNPO-204ENST00000519664 KRTAP15-1Q3LI76 137 aa5.73□□□□□ -1.49
SYNPO-204ENST00000519664 KRTAP10-6P60371 365 aaPredicted RBP5.69□□□□□ -1.5
SYNPO-204ENST00000519664 ANK2Q01484 3957 aa5.69□□□□□ -1.5
SYNPO-204ENST00000519664 KRTAP10-10P60014 251 aa5.68□□□□□ -1.5
SYNPO-204ENST00000519664 DNAH5Q8TE73 4624 aa5.68□□□□□ -1.5
SYNPO-204ENST00000519664 KRTAP12-1P59990 96 aa5.67□□□□□ -1.5
SYNPO-204ENST00000519664 DNAH1Q9P2D7 4330 aa5.64□□□□□ -1.51
SYNPO-204ENST00000519664 DNAH3Q8TD57 4116 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms