RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 KRTAP19-6Q3LI70 58 aa5.64□□□□□ -1.51
LIMCH1-221ENST00000515785 LYRM7Q5U5X0 104 aa5.64□□□□□ -1.51
LIMCH1-221ENST00000515785 H0YGX0 51 aa5.63□□□□□ -1.51
LIMCH1-221ENST00000515785 Q5XG85 94 aa5.63□□□□□ -1.51
LIMCH1-221ENST00000515785 LINC00575Q6W349 94 aa5.63□□□□□ -1.51
LIMCH1-221ENST00000515785 F8W1H4 67 aa5.62□□□□□ -1.51
LIMCH1-221ENST00000515785 TRACP01848 142 aa5.62□□□□□ -1.51
LIMCH1-221ENST00000515785 COX7BP24311 80 aa5.61□□□□□ -1.51
LIMCH1-221ENST00000515785 ELOF1P60002 83 aaKnown RBP5.61□□□□□ -1.51
LIMCH1-221ENST00000515785 ETDBQ3ZM63 59 aa5.61□□□□□ -1.51
LIMCH1-221ENST00000515785 OBSCN-AS1Q96MR7 158 aa5.61□□□□□ -1.51
LIMCH1-221ENST00000515785 ANKRD29Q8N6D5 301 aa5.6□□□□□ -1.51
LIMCH1-221ENST00000515785 TRBV7-6A0A0J9YX20 115 aa5.59□□□□□ -1.51
LIMCH1-221ENST00000515785 KRTAP23-1A1A580 65 aa5.59□□□□□ -1.51
LIMCH1-221ENST00000515785 BAALC-AS2P0C853 105 aa5.59□□□□□ -1.51
LIMCH1-221ENST00000515785 H3BT86 120 aa5.58□□□□□ -1.52
LIMCH1-221ENST00000515785 Q75L30 129 aa5.58□□□□□ -1.52
LIMCH1-221ENST00000515785 DHRS4-AS1Q9P1J3 65 aa5.58□□□□□ -1.52
LIMCH1-221ENST00000515785 A0A1B0GX51 115 aa5.57□□□□□ -1.52
LIMCH1-221ENST00000515785 hADV29S1A0JD25 119 aa5.57□□□□□ -1.52
LIMCH1-221ENST00000515785 FAM236DA0A1B0GTK5 79 aa5.56□□□□□ -1.52
LIMCH1-221ENST00000515785 FAM236CP0DP71 79 aa5.56□□□□□ -1.52
LIMCH1-221ENST00000515785 TEN1Q86WV5 123 aa5.56□□□□□ -1.52
LIMCH1-221ENST00000515785 TEX49A0A1B0GTD5 131 aa5.55□□□□□ -1.52
LIMCH1-221ENST00000515785 Q6ZQY7 126 aa5.55□□□□□ -1.52
LIMCH1-221ENST00000515785 KRTAP20-1Q3LI63 56 aa5.54□□□□□ -1.52
LIMCH1-221ENST00000515785 OCIAD2Q56VL3 154 aa5.54□□□□□ -1.52
LIMCH1-221ENST00000515785 C20orf166-AS1Q96NR2 134 aa5.54□□□□□ -1.52
LIMCH1-221ENST00000515785 Q96NJ1 140 aa5.53□□□□□ -1.52
LIMCH1-221ENST00000515785 ORMDL1Q9P0S3 153 aa5.53□□□□□ -1.52
LIMCH1-221ENST00000515785 DNAL4O96015 105 aa5.52□□□□□ -1.53
LIMCH1-221ENST00000515785 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.52□□□□□ -1.53
LIMCH1-221ENST00000515785 CBY1Q9Y3M2 126 aa5.52□□□□□ -1.53
LIMCH1-221ENST00000515785 A0A1B0GV72 72 aa5.51□□□□□ -1.53
LIMCH1-221ENST00000515785 PPDPFLQ8WWR9 84 aa5.51□□□□□ -1.53
LIMCH1-221ENST00000515785 IGLV5-48A0A075B6I7 105 aa5.49□□□□□ -1.53
LIMCH1-221ENST00000515785 C14orf132Q9NPU4 83 aa5.48□□□□□ -1.53
LIMCH1-221ENST00000515785 TMEM256-PLSCR3K7ERE1 68 aa5.47□□□□□ -1.53
LIMCH1-221ENST00000515785 MUC12Q9UKN1 5478 aa5.47□□□□□ -1.53
LIMCH1-221ENST00000515785 NDUFV3P56181 108 aaKnown RBP5.46□□□□□ -1.54
LIMCH1-221ENST00000515785 IGFL1Q6UW32 110 aa5.45□□□□□ -1.54
LIMCH1-221ENST00000515785 A8MUU9 505 aa5.43□□□□□ -1.54
LIMCH1-221ENST00000515785 K7ERU9 68 aa5.43□□□□□ -1.54
LIMCH1-221ENST00000515785 SNCGO76070 127 aa5.43□□□□□ -1.54
LIMCH1-221ENST00000515785 Q6ZQT0 140 aa5.43□□□□□ -1.54
LIMCH1-221ENST00000515785 RBM12B-AS1Q9P1G2 102 aa5.43□□□□□ -1.54
LIMCH1-221ENST00000515785 TRBV7-4A0A0J9YYF1 115 aa5.42□□□□□ -1.54
LIMCH1-221ENST00000515785 KRTAP16-1A8MUX0 517 aa5.42□□□□□ -1.54
LIMCH1-221ENST00000515785 LOC110117498A0A087WWA1 95 aa5.41□□□□□ -1.54
LIMCH1-221ENST00000515785 TRBV7-7A0A0K0K1E9 115 aa5.41□□□□□ -1.54
LIMCH1-221ENST00000515785 JMJD7-PLA2G4BH0Y9G9 81 aa5.41□□□□□ -1.54
LIMCH1-221ENST00000515785 CCKP06307 115 aa5.41□□□□□ -1.54
LIMCH1-221ENST00000515785 RBM3P98179 157 aaKnown RBP5.41□□□□□ -1.54
LIMCH1-221ENST00000515785 F8WEM9 126 aa5.4□□□□□ -1.54
LIMCH1-221ENST00000515785 H3BQ85 93 aa5.4□□□□□ -1.54
LIMCH1-221ENST00000515785 A0A1W2PNM2 257 aa5.39□□□□□ -1.55
LIMCH1-221ENST00000515785 HRES1P13985 223 aa5.38□□□□□ -1.55
LIMCH1-221ENST00000515785 Q8N9P0 234 aaPredicted RBP5.38□□□□□ -1.55
LIMCH1-221ENST00000515785 J3QR89 54 aa5.37□□□□□ -1.55
LIMCH1-221ENST00000515785 MPLKIPQ8TAP9 179 aa5.37□□□□□ -1.55
LIMCH1-221ENST00000515785 FAM240AA0A1B0GVK7 77 aa5.36□□□□□ -1.55
LIMCH1-221ENST00000515785 DSCR10P59022 87 aa5.36□□□□□ -1.55
LIMCH1-221ENST00000515785 MT-ATP8P03928 68 aa5.35□□□□□ -1.55
LIMCH1-221ENST00000515785 Q6JHZ5 121 aa5.35□□□□□ -1.55
LIMCH1-221ENST00000515785 DSCR8Q96T75 97 aa5.35□□□□□ -1.55
LIMCH1-221ENST00000515785 VPS25Q9BRG1 176 aa5.34□□□□□ -1.55
LIMCH1-221ENST00000515785 NOTCH2NLQ7Z3S9 236 aa5.33□□□□□ -1.56
LIMCH1-221ENST00000515785 ACYP1P07311 99 aa5.32□□□□□ -1.56
LIMCH1-221ENST00000515785 PDE6GP18545 87 aa5.31□□□□□ -1.56
LIMCH1-221ENST00000515785 A8MWP4 228 aa5.29□□□□□ -1.56
LIMCH1-221ENST00000515785 Q6ZVQ6 151 aa5.29□□□□□ -1.56
LIMCH1-221ENST00000515785 SIGMAR1Q99720 223 aa5.29□□□□□ -1.56
LIMCH1-221ENST00000515785 IGKV3D-7A0A0C4DH55 119 aa5.27□□□□□ -1.57
LIMCH1-221ENST00000515785 LINC00643Q86TS7 51 aa5.27□□□□□ -1.57
LIMCH1-221ENST00000515785 MDN1Q9NU22 5596 aa5.26□□□□□ -1.57
LIMCH1-221ENST00000515785 KRTAP2-3P0C7H8 128 aa5.26□□□□□ -1.57
LIMCH1-221ENST00000515785 KRTAP2-4Q9BYR9 128 aa5.26□□□□□ -1.57
LIMCH1-221ENST00000515785 A0A087WSZ3 146 aa5.25□□□□□ -1.57
LIMCH1-221ENST00000515785 A6NN06 94 aa5.24□□□□□ -1.57
LIMCH1-221ENST00000515785 LINC00313P59037 77 aa5.24□□□□□ -1.57
LIMCH1-221ENST00000515785 SS18L2Q9UHA2 77 aa5.24□□□□□ -1.57
LIMCH1-221ENST00000515785 KMT2DO14686 5537 aa5.22□□□□□ -1.57
LIMCH1-221ENST00000515785 DEFB116Q30KQ4 102 aa5.22□□□□□ -1.57
LIMCH1-221ENST00000515785 UBL5Q9BZL1 73 aa5.22□□□□□ -1.57
LIMCH1-221ENST00000515785 A0A087WVE0 104 aa5.21□□□□□ -1.58
LIMCH1-221ENST00000515785 A0A1B0GW54 56 aa5.21□□□□□ -1.58
LIMCH1-221ENST00000515785 NREPQ16612 68 aa5.21□□□□□ -1.58
LIMCH1-221ENST00000515785 Q8N9L7 120 aa5.21□□□□□ -1.58
LIMCH1-221ENST00000515785 LINC00472Q9H8W2 130 aa5.21□□□□□ -1.58
LIMCH1-221ENST00000515785 BPY2O14599 106 aa5.2□□□□□ -1.58
LIMCH1-221ENST00000515785 KRTAP5-9P26371 169 aa5.19□□□□□ -1.58
LIMCH1-221ENST00000515785 IGKV4-1P06312 121 aa5.18□□□□□ -1.58
LIMCH1-221ENST00000515785 CXCL6P80162 114 aa5.17□□□□□ -1.58
LIMCH1-221ENST00000515785 SPINK7P58062 85 aa5.16□□□□□ -1.58
LIMCH1-221ENST00000515785 ATP5EP2Q5VTU8 51 aa5.16□□□□□ -1.58
LIMCH1-221ENST00000515785 IMUPQ9GZP8 106 aa5.16□□□□□ -1.58
LIMCH1-221ENST00000515785 K7EQZ3 153 aa5.15□□□□□ -1.59
LIMCH1-221ENST00000515785 HIST1H4AP62805 103 aaKnown RBP5.15□□□□□ -1.59
LIMCH1-221ENST00000515785 KRTAP15-1Q3LI76 137 aa5.14□□□□□ -1.59
LIMCH1-221ENST00000515785 FAM236AA0A1B0GUQ0 79 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms