RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ANAPC11Q9NYG5 84 aa7.04□□□□□ -1.28
LIMCH1-213ENST00000511496 NOTCH1P46531 2555 aa7.04□□□□□ -1.28
LIMCH1-213ENST00000511496 USP24Q9UPU5 2620 aa7.03□□□□□ -1.28
LIMCH1-213ENST00000511496 FLNBO75369 2602 aaKnown RBP7.03□□□□□ -1.28
LIMCH1-213ENST00000511496 LINC00483Q53H64 154 aa7.03□□□□□ -1.28
LIMCH1-213ENST00000511496 COL6A5A8TX70 2615 aa7.03□□□□□ -1.28
LIMCH1-213ENST00000511496 IGSF10Q6WRI0 2623 aa7.02□□□□□ -1.29
LIMCH1-213ENST00000511496 SPINT4Q6UDR6 99 aa7.01□□□□□ -1.29
LIMCH1-213ENST00000511496 IGKV2D-30A0A075B6S6 120 aa7□□□□□ -1.29
LIMCH1-213ENST00000511496 IGKV2-30P06310 120 aa7□□□□□ -1.29
LIMCH1-213ENST00000511496 NDUFAF8A1L188 74 aa6.99□□□□□ -1.29
LIMCH1-213ENST00000511496 ITPR2Q14571 2701 aa6.98□□□□□ -1.29
LIMCH1-213ENST00000511496 KRTAP1-3Q8IUG1 177 aa6.97□□□□□ -1.29
LIMCH1-213ENST00000511496 H0YAA0 97 aa6.97□□□□□ -1.29
LIMCH1-213ENST00000511496 FAM229AH3BQW9 127 aa6.95□□□□□ -1.3
LIMCH1-213ENST00000511496 Q6ZSA8 131 aa6.94□□□□□ -1.3
LIMCH1-213ENST00000511496 DNAH10Q8IVF4 4471 aa6.93□□□□□ -1.3
LIMCH1-213ENST00000511496 MAST4O15021 2626 aa6.93□□□□□ -1.3
LIMCH1-213ENST00000511496 C14orf177Q52M58 125 aa6.92□□□□□ -1.3
LIMCH1-213ENST00000511496 NSD1Q96L73 2696 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-213ENST00000511496 TENM4Q6N022 2769 aa6.91□□□□□ -1.3
LIMCH1-213ENST00000511496 LY6G6CO95867 125 aa6.91□□□□□ -1.3
LIMCH1-213ENST00000511496 CIRBP-AS1Q8TBR5 109 aa6.9□□□□□ -1.31
LIMCH1-213ENST00000511496 KRTAP16-1A8MUX0 517 aa6.89□□□□□ -1.31
LIMCH1-213ENST00000511496 Q8N1X5 172 aa6.89□□□□□ -1.31
LIMCH1-213ENST00000511496 WWC2-AS2Q96NR7 200 aa6.89□□□□□ -1.31
LIMCH1-213ENST00000511496 DMBT1Q9UGM3 2413 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-213ENST00000511496 PANO1I0J062 215 aa6.88□□□□□ -1.31
LIMCH1-213ENST00000511496 KRTAP13-1Q8IUC0 172 aa6.88□□□□□ -1.31
LIMCH1-213ENST00000511496 MEGF8Q7Z7M0 2845 aa6.88□□□□□ -1.31
LIMCH1-213ENST00000511496 C20orf166-AS1Q96NR2 134 aa6.88□□□□□ -1.31
LIMCH1-213ENST00000511496 PSORS1C2Q9UIG4 136 aa6.88□□□□□ -1.31
LIMCH1-213ENST00000511496 SMR3AQ99954 134 aa6.87□□□□□ -1.31
LIMCH1-213ENST00000511496 A0A1B0GU33 70 aa6.86□□□□□ -1.31
LIMCH1-213ENST00000511496 KRTAP1-1Q07627 177 aa6.85□□□□□ -1.31
LIMCH1-213ENST00000511496 TGP01266 2768 aa6.84□□□□□ -1.31
LIMCH1-213ENST00000511496 K7ERS5 55 aa6.84□□□□□ -1.31
LIMCH1-213ENST00000511496 TYMSOSQ8TAI1 123 aa6.84□□□□□ -1.31
LIMCH1-213ENST00000511496 KRTAP1-5Q9BYS1 174 aa6.84□□□□□ -1.31
LIMCH1-213ENST00000511496 LYSTQ99698 3801 aa6.83□□□□□ -1.32
LIMCH1-213ENST00000511496 DNAH1Q9P2D7 4330 aa6.81□□□□□ -1.32
LIMCH1-213ENST00000511496 A0A087WTM6 91 aa6.8□□□□□ -1.32
LIMCH1-213ENST00000511496 NUPR2A6NF83 97 aa6.79□□□□□ -1.32
LIMCH1-213ENST00000511496 STAB2Q8WWQ8 2551 aa6.79□□□□□ -1.32
LIMCH1-213ENST00000511496 KRTAP10-11P60412 298 aa6.78□□□□□ -1.32
LIMCH1-213ENST00000511496 KMT2BQ9UMN6 2715 aaPredicted RBP6.76□□□□□ -1.33
LIMCH1-213ENST00000511496 H1FX-AS1Q4G0G2 97 aa6.75□□□□□ -1.33
LIMCH1-213ENST00000511496 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-213ENST00000511496 ANK2Q01484 3957 aa6.75□□□□□ -1.33
LIMCH1-213ENST00000511496 STAB1Q9NY15 2570 aa6.73□□□□□ -1.33
LIMCH1-213ENST00000511496 C10orf95Q9H7T3 257 aa6.73□□□□□ -1.33
LIMCH1-213ENST00000511496 UBE2DNLQ8IWF7 75 aa6.72□□□□□ -1.33
LIMCH1-213ENST00000511496 TPRXLQ17RH7 258 aa6.72□□□□□ -1.33
LIMCH1-213ENST00000511496 KRTAP15-1Q3LI76 137 aa6.7□□□□□ -1.34
LIMCH1-213ENST00000511496 FRAS1Q86XX4 4008 aa6.69□□□□□ -1.34
LIMCH1-213ENST00000511496 DNAH9Q9NYC9 4486 aa6.67□□□□□ -1.34
LIMCH1-213ENST00000511496 DNAH8Q96JB1 4490 aa6.64□□□□□ -1.35
LIMCH1-213ENST00000511496 SPACA4Q8TDM5 124 aa6.63□□□□□ -1.35
LIMCH1-213ENST00000511496 LUZP6Q538Z0 58 aa6.62□□□□□ -1.35
LIMCH1-213ENST00000511496 A0A0D9SG42 100 aa6.62□□□□□ -1.35
LIMCH1-213ENST00000511496 COX6B2Q6YFQ2 88 aa6.61□□□□□ -1.35
LIMCH1-213ENST00000511496 MGAM2Q2M2H8 2515 aa6.59□□□□□ -1.35
LIMCH1-213ENST00000511496 DNAH17Q9UFH2 4485 aa6.58□□□□□ -1.36
LIMCH1-213ENST00000511496 RPL37P61927 97 aaKnown RBP6.56□□□□□ -1.36
LIMCH1-213ENST00000511496 NBDYA0A0U1RRE5 68 aa6.54□□□□□ -1.36
LIMCH1-213ENST00000511496 APLNQ9ULZ1 77 aa6.52□□□□□ -1.37
LIMCH1-213ENST00000511496 CMYA5Q8N3K9 4069 aa6.49□□□□□ -1.37
LIMCH1-213ENST00000511496 FBN3Q75N90 2809 aa6.49□□□□□ -1.37
LIMCH1-213ENST00000511496 KRTAP24-1Q3LI83 254 aa6.49□□□□□ -1.37
LIMCH1-213ENST00000511496 KRTAP3-1Q9BYR8 98 aa6.47□□□□□ -1.37
LIMCH1-213ENST00000511496 KRTAP13-2Q52LG2 175 aa6.44□□□□□ -1.38
LIMCH1-213ENST00000511496 HUWE1Q7Z6Z7 4374 aaKnown RBP6.43□□□□□ -1.38
LIMCH1-213ENST00000511496 DNAH7Q8WXX0 4024 aa6.42□□□□□ -1.38
LIMCH1-213ENST00000511496 Q6ZRN7 208 aaPredicted RBP6.42□□□□□ -1.38
LIMCH1-213ENST00000511496 KRTAP13-4Q3LI77 160 aa6.41□□□□□ -1.38
LIMCH1-213ENST00000511496 C9orf92A6NGG3 77 aa6.34□□□□□ -1.39
LIMCH1-213ENST00000511496 S4R3F8 94 aa6.31□□□□□ -1.4
LIMCH1-213ENST00000511496 KMT2AQ03164 3969 aa6.31□□□□□ -1.4
LIMCH1-213ENST00000511496 VPS13DQ5THJ4 4388 aa6.3□□□□□ -1.4
LIMCH1-213ENST00000511496 KRTAP10-6P60371 365 aaPredicted RBP6.3□□□□□ -1.4
LIMCH1-213ENST00000511496 HECTD4Q9Y4D8 3996 aa6.3□□□□□ -1.4
LIMCH1-213ENST00000511496 PLECQ15149 4684 aaKnown RBP6.28□□□□□ -1.4
LIMCH1-213ENST00000511496 KRTAP12-2P59991 146 aa6.27□□□□□ -1.41
LIMCH1-213ENST00000511496 DNAH3Q8TD57 4116 aa6.27□□□□□ -1.41
LIMCH1-213ENST00000511496 J3QKU1 62 aa6.25□□□□□ -1.41
LIMCH1-213ENST00000511496 DNAH2Q9P225 4427 aa6.19□□□□□ -1.42
LIMCH1-213ENST00000511496 KRTAP3-2Q9BYR7 98 aa6.17□□□□□ -1.42
LIMCH1-213ENST00000511496 KRTAP1-4P0C5Y4 121 aa6.17□□□□□ -1.42
LIMCH1-213ENST00000511496 PLAC4Q8WY50 150 aa6.17□□□□□ -1.42
LIMCH1-213ENST00000511496 XP32Q5T750 250 aa6.16□□□□□ -1.42
LIMCH1-213ENST00000511496 DNAH11Q96DT5 4516 aa6.15□□□□□ -1.42
LIMCH1-213ENST00000511496 SEC61BP60468 96 aaKnown RBP6.13□□□□□ -1.43
LIMCH1-213ENST00000511496 KRTAP12-1P59990 96 aa6.12□□□□□ -1.43
LIMCH1-213ENST00000511496 DNAH6Q9C0G6 4158 aa6.12□□□□□ -1.43
LIMCH1-213ENST00000511496 KRTAP3-3Q9BYR6 98 aa6.11□□□□□ -1.43
LIMCH1-213ENST00000511496 LRP1BQ9NZR2 4599 aa6.11□□□□□ -1.43
LIMCH1-213ENST00000511496 KRTAP10-2P60368 255 aa6.06□□□□□ -1.44
LIMCH1-213ENST00000511496 STARD9Q9P2P6 4700 aa6.01□□□□□ -1.45
LIMCH1-213ENST00000511496 DYNC2H1Q8NCM8 4307 aaKnown RBP6□□□□□ -1.45
LIMCH1-213ENST00000511496 KRTAP10-8P60410 259 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms