RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 Q6Q795 121 aa6.62□□□□□ -1.35
SDC3-204ENST00000487984 A0A1W2PNM2 257 aa6.6□□□□□ -1.35
SDC3-204ENST00000487984 LCE2DQ5TA82 110 aaPredicted RBP6.59□□□□□ -1.35
SDC3-204ENST00000487984 RPL37P61927 97 aaKnown RBP6.58□□□□□ -1.36
SDC3-204ENST00000487984 MT1HP80294 61 aa6.58□□□□□ -1.36
SDC3-204ENST00000487984 UBL5Q9BZL1 73 aa6.58□□□□□ -1.36
SDC3-204ENST00000487984 SS18L2Q9UHA2 77 aa6.58□□□□□ -1.36
SDC3-204ENST00000487984 TRBV7-7A0A0K0K1E9 115 aa6.57□□□□□ -1.36
SDC3-204ENST00000487984 A0A087WSZ3 146 aa6.55□□□□□ -1.36
SDC3-204ENST00000487984 NREPQ16612 68 aa6.55□□□□□ -1.36
SDC3-204ENST00000487984 LINC00846Q9NV44 126 aa6.54□□□□□ -1.36
SDC3-204ENST00000487984 Q6ZVQ6 151 aa6.5□□□□□ -1.37
SDC3-204ENST00000487984 LINC00643Q86TS7 51 aa6.5□□□□□ -1.37
SDC3-204ENST00000487984 CRCT1Q9UGL9 99 aa6.5□□□□□ -1.37
SDC3-204ENST00000487984 ATP5EP2Q5VTU8 51 aa6.49□□□□□ -1.37
SDC3-204ENST00000487984 FSIP2Q5CZC0 6907 aa6.48□□□□□ -1.37
SDC3-204ENST00000487984 J3KT08 172 aa6.48□□□□□ -1.37
SDC3-204ENST00000487984 FLGP20930 4061 aaPredicted RBP6.47□□□□□ -1.37
SDC3-204ENST00000487984 BPY2O14599 106 aa6.47□□□□□ -1.37
SDC3-204ENST00000487984 LORP23490 312 aaPredicted RBP6.47□□□□□ -1.37
SDC3-204ENST00000487984 KRTAP10-6P60371 365 aaPredicted RBP6.47□□□□□ -1.37
SDC3-204ENST00000487984 COX6B2Q6YFQ2 88 aa6.47□□□□□ -1.37
SDC3-204ENST00000487984 SIGMAR1Q99720 223 aa6.46□□□□□ -1.38
SDC3-204ENST00000487984 CXCL6P80162 114 aa6.45□□□□□ -1.38
SDC3-204ENST00000487984 M0R2T5 61 aa6.44□□□□□ -1.38
SDC3-204ENST00000487984 Q75L30 129 aa6.44□□□□□ -1.38
SDC3-204ENST00000487984 LINC00472Q9H8W2 130 aa6.44□□□□□ -1.38
SDC3-204ENST00000487984 NDUFB1O75438 58 aa6.43□□□□□ -1.38
SDC3-204ENST00000487984 ATP11AUNQ6ZP68 121 aa6.42□□□□□ -1.38
SDC3-204ENST00000487984 IGKV4-1P06312 121 aa6.41□□□□□ -1.38
SDC3-204ENST00000487984 IGKV3D-7A0A0C4DH55 119 aa6.4□□□□□ -1.38
SDC3-204ENST00000487984 Q96NJ1 140 aa6.4□□□□□ -1.38
SDC3-204ENST00000487984 DEFB116Q30KQ4 102 aa6.39□□□□□ -1.39
SDC3-204ENST00000487984 IMUPQ9GZP8 106 aa6.39□□□□□ -1.39
SDC3-204ENST00000487984 A8MWP4 228 aa6.38□□□□□ -1.39
SDC3-204ENST00000487984 C20orf166-AS1Q96NR2 134 aa6.37□□□□□ -1.39
SDC3-204ENST00000487984 MT-ATP8P03928 68 aa6.36□□□□□ -1.39
SDC3-204ENST00000487984 DSCR10P59022 87 aa6.36□□□□□ -1.39
SDC3-204ENST00000487984 HIST1H4AP62805 103 aaKnown RBP6.36□□□□□ -1.39
SDC3-204ENST00000487984 A8MUU9 505 aa6.35□□□□□ -1.39
SDC3-204ENST00000487984 PRR15Q8IV56 129 aa6.35□□□□□ -1.39
SDC3-204ENST00000487984 A0A1B0GVX0 72 aa6.34□□□□□ -1.39
SDC3-204ENST00000487984 IGHV6-1A0A0B4J1U7 121 aa6.32□□□□□ -1.4
SDC3-204ENST00000487984 C8orf87E5RJ46 101 aa6.32□□□□□ -1.4
SDC3-204ENST00000487984 K7EQZ3 153 aa6.32□□□□□ -1.4
SDC3-204ENST00000487984 Q8N9L7 120 aa6.31□□□□□ -1.4
SDC3-204ENST00000487984 HCG22E2RYF7 251 aa6.28□□□□□ -1.4
SDC3-204ENST00000487984 LINC00313P59037 77 aa6.28□□□□□ -1.4
SDC3-204ENST00000487984 C8orf17Q9NRJ1 99 aa6.28□□□□□ -1.4
SDC3-204ENST00000487984 A0A087WVE0 104 aa6.26□□□□□ -1.41
SDC3-204ENST00000487984 CASC2Q6XLA1 102 aa6.26□□□□□ -1.41
SDC3-204ENST00000487984 hDV103S1A0JD37 113 aa6.25□□□□□ -1.41
SDC3-204ENST00000487984 KRTAP16-1A8MUX0 517 aa6.25□□□□□ -1.41
SDC3-204ENST00000487984 MMP24-AS1A0A0U1RRL7 71 aa6.24□□□□□ -1.41
SDC3-204ENST00000487984 SCGB1A1P11684 91 aa6.24□□□□□ -1.41
SDC3-204ENST00000487984 NOTCH2NLQ7Z3S9 236 aa6.23□□□□□ -1.41
SDC3-204ENST00000487984 WFDC13Q8IUB5 93 aa6.23□□□□□ -1.41
SDC3-204ENST00000487984 TMEM254Q8TBM7 123 aa6.23□□□□□ -1.41
SDC3-204ENST00000487984 FAM236AA0A1B0GUQ0 79 aa6.22□□□□□ -1.41
SDC3-204ENST00000487984 FAM236BA0A1B0GV22 79 aa6.22□□□□□ -1.41
SDC3-204ENST00000487984 MRPL34Q9BQ48 92 aaKnown RBP6.21□□□□□ -1.42
SDC3-204ENST00000487984 KRTAP9-8Q9BYQ0 159 aa6.21□□□□□ -1.42
SDC3-204ENST00000487984 SMIM20Q8N5G0 67 aa6.2□□□□□ -1.42
SDC3-204ENST00000487984 ATOX1O00244 68 aa6.19□□□□□ -1.42
SDC3-204ENST00000487984 FAM236DA0A1B0GTK5 79 aa6.17□□□□□ -1.42
SDC3-204ENST00000487984 KRTAP9-7A8MTY7 169 aa6.17□□□□□ -1.42
SDC3-204ENST00000487984 NDUFS5O43920 106 aa6.17□□□□□ -1.42
SDC3-204ENST00000487984 FAM236CP0DP71 79 aa6.17□□□□□ -1.42
SDC3-204ENST00000487984 HRES1P13985 223 aa6.17□□□□□ -1.42
SDC3-204ENST00000487984 MPLKIPQ8TAP9 179 aa6.17□□□□□ -1.42
SDC3-204ENST00000487984 TP53AIP1Q9HCN2 124 aa6.17□□□□□ -1.42
SDC3-204ENST00000487984 USH2AO75445 5202 aa6.17□□□□□ -1.42
SDC3-204ENST00000487984 Q8N9P0 234 aaPredicted RBP6.15□□□□□ -1.42
SDC3-204ENST00000487984 RBM12B-AS1Q9P1G2 102 aa6.14□□□□□ -1.43
SDC3-204ENST00000487984 SSPOA2VEC9 5147 aa6.12□□□□□ -1.43
SDC3-204ENST00000487984 UQCRQO14949 82 aa6.12□□□□□ -1.43
SDC3-204ENST00000487984 MT2AP02795 61 aa6.12□□□□□ -1.43
SDC3-204ENST00000487984 TRAV7A0A075B6U4 112 aa6.11□□□□□ -1.43
SDC3-204ENST00000487984 OCR1Q9BZK8 76 aa6.1□□□□□ -1.43
SDC3-204ENST00000487984 SERP2Q8N6R1 65 aa6.09□□□□□ -1.43
SDC3-204ENST00000487984 ANAPC13Q9BS18 74 aa6.09□□□□□ -1.43
SDC3-204ENST00000487984 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.08□□□□□ -1.44
SDC3-204ENST00000487984 MT1FP04733 61 aa6.08□□□□□ -1.44
SDC3-204ENST00000487984 C5orf47Q569G3 176 aa6.08□□□□□ -1.44
SDC3-204ENST00000487984 ZCCHC13Q8WW36 166 aaKnown RBP6.08□□□□□ -1.44
SDC3-204ENST00000487984 MP68P56378 58 aa6.07□□□□□ -1.44
SDC3-204ENST00000487984 TRAV22A0A0B4J277 110 aa6.06□□□□□ -1.44
SDC3-204ENST00000487984 H3BPC8 53 aa6.04□□□□□ -1.44
SDC3-204ENST00000487984 SPINK7P58062 85 aa6.04□□□□□ -1.44
SDC3-204ENST00000487984 H0Y9P7 68 aa6.03□□□□□ -1.44
SDC3-204ENST00000487984 COX7CP15954 63 aa6.03□□□□□ -1.44
SDC3-204ENST00000487984 KRTAP10-10P60014 251 aa6.03□□□□□ -1.44
SDC3-204ENST00000487984 LCE2BO14633 110 aa6.02□□□□□ -1.45
SDC3-204ENST00000487984 KRTAP9-3Q9BYQ3 159 aa6.02□□□□□ -1.45
SDC3-204ENST00000487984 FCGBPQ9Y6R7 5405 aaPredicted RBP6□□□□□ -1.45
SDC3-204ENST00000487984 LOC101927531A0A1B0GV80 90 aa5.99□□□□□ -1.45
SDC3-204ENST00000487984 Q5W150 140 aa5.99□□□□□ -1.45
SDC3-204ENST00000487984 LINC00208Q96KT6 92 aa5.98□□□□□ -1.45
SDC3-204ENST00000487984 C1orf64Q8NEQ6 169 aa5.97□□□□□ -1.45
SDC3-204ENST00000487984 C20orf197Q8N268 126 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms