RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 KRTAP29-1A8MX34 341 aaPredicted RBP7.57□□□□□ -1.2
SHROOM3-208ENST00000486758 C1orf134Q5TEV5 83 aa7.56□□□□□ -1.2
SHROOM3-208ENST00000486758 LINC00472Q9H8W2 130 aa7.56□□□□□ -1.2
SHROOM3-208ENST00000486758 TP53AIP1Q9HCN2 124 aa7.56□□□□□ -1.2
SHROOM3-208ENST00000486758 IGLV7-46A0A075B6I9 117 aa7.55□□□□□ -1.2
SHROOM3-208ENST00000486758 CDC42SE1Q9NRR8 79 aa7.55□□□□□ -1.2
SHROOM3-208ENST00000486758 DMBT1Q9UGM3 2413 aaPredicted RBP7.55□□□□□ -1.2
SHROOM3-208ENST00000486758 MRPL34Q9BQ48 92 aaKnown RBP7.54□□□□□ -1.2
SHROOM3-208ENST00000486758 Q75L30 129 aa7.54□□□□□ -1.2
SHROOM3-208ENST00000486758 PSORS1C2Q9UIG4 136 aa7.54□□□□□ -1.2
SHROOM3-208ENST00000486758 A0A087WTM6 91 aa7.53□□□□□ -1.2
SHROOM3-208ENST00000486758 A0A1B0GU69 56 aa7.52□□□□□ -1.21
SHROOM3-208ENST00000486758 ZNF706Q9Y5V0 76 aaPredicted RBP7.51□□□□□ -1.21
SHROOM3-208ENST00000486758 HRES1P13985 223 aa7.51□□□□□ -1.21
SHROOM3-208ENST00000486758 MEGF8Q7Z7M0 2845 aa7.51□□□□□ -1.21
SHROOM3-208ENST00000486758 IGKV2D-30A0A075B6S6 120 aa7.51□□□□□ -1.21
SHROOM3-208ENST00000486758 IGKV2-30P06310 120 aa7.51□□□□□ -1.21
SHROOM3-208ENST00000486758 A0A1B0GVX0 72 aa7.5□□□□□ -1.21
SHROOM3-208ENST00000486758 A6NN06 94 aa7.48□□□□□ -1.21
SHROOM3-208ENST00000486758 PLECQ15149 4684 aaKnown RBP7.47□□□□□ -1.21
SHROOM3-208ENST00000486758 A0A087X002 238 aa7.47□□□□□ -1.21
SHROOM3-208ENST00000486758 NOTCH2NLQ7Z3S9 236 aa7.47□□□□□ -1.21
SHROOM3-208ENST00000486758 ACYP2P14621 99 aa7.47□□□□□ -1.21
SHROOM3-208ENST00000486758 KMT2AQ03164 3969 aa7.46□□□□□ -1.21
SHROOM3-208ENST00000486758 SPACA4Q8TDM5 124 aa7.45□□□□□ -1.22
SHROOM3-208ENST00000486758 LINC01558Q9Y6Z2 57 aa7.44□□□□□ -1.22
SHROOM3-208ENST00000486758 LINC01554Q52M75 96 aa7.43□□□□□ -1.22
SHROOM3-208ENST00000486758 LINC00313P59037 77 aa7.42□□□□□ -1.22
SHROOM3-208ENST00000486758 DNAH3Q8TD57 4116 aa7.42□□□□□ -1.22
SHROOM3-208ENST00000486758 ZNF861PO60384 105 aa7.42□□□□□ -1.22
SHROOM3-208ENST00000486758 ADM2Q7Z4H4 148 aa7.41□□□□□ -1.22
SHROOM3-208ENST00000486758 Q5W150 140 aa7.37□□□□□ -1.23
SHROOM3-208ENST00000486758 FLG2Q5D862 2391 aaPredicted RBP7.37□□□□□ -1.23
SHROOM3-208ENST00000486758 SPRR1BP22528 89 aa7.36□□□□□ -1.23
SHROOM3-208ENST00000486758 MIR22HGQ0VDD5 57 aa7.35□□□□□ -1.23
SHROOM3-208ENST00000486758 STARD9Q9P2P6 4700 aa7.35□□□□□ -1.23
SHROOM3-208ENST00000486758 SMR3BP02814 79 aaPredicted RBP7.34□□□□□ -1.23
SHROOM3-208ENST00000486758 IGLV7-43P04211 117 aa7.34□□□□□ -1.24
SHROOM3-208ENST00000486758 DNAH8Q96JB1 4490 aa7.33□□□□□ -1.24
SHROOM3-208ENST00000486758 DNAH6Q9C0G6 4158 aa7.33□□□□□ -1.24
SHROOM3-208ENST00000486758 UQCR11O14957 56 aa7.32□□□□□ -1.24
SHROOM3-208ENST00000486758 Q6ZRN7 208 aaPredicted RBP7.31□□□□□ -1.24
SHROOM3-208ENST00000486758 DNAH17Q9UFH2 4485 aa7.3□□□□□ -1.24
SHROOM3-208ENST00000486758 KRTAP10-2P60368 255 aa7.3□□□□□ -1.24
SHROOM3-208ENST00000486758 Q96NJ1 140 aa7.3□□□□□ -1.24
SHROOM3-208ENST00000486758 Q6ZR54 194 aa7.3□□□□□ -1.24
SHROOM3-208ENST00000486758 HECTD4Q9Y4D8 3996 aa7.29□□□□□ -1.24
SHROOM3-208ENST00000486758 PLA2G1BP04054 148 aaKnown RBP7.28□□□□□ -1.24
SHROOM3-208ENST00000486758 Q8N1X5 172 aa7.28□□□□□ -1.24
SHROOM3-208ENST00000486758 FAM229AH3BQW9 127 aa7.27□□□□□ -1.25
SHROOM3-208ENST00000486758 DNAH2Q9P225 4427 aa7.27□□□□□ -1.25
SHROOM3-208ENST00000486758 PRKDCP78527 4128 aaKnown RBP7.26□□□□□ -1.25
SHROOM3-208ENST00000486758 TYMSOSQ8TAI1 123 aa7.24□□□□□ -1.25
SHROOM3-208ENST00000486758 CSAG1Q6PB30 78 aa7.24□□□□□ -1.25
SHROOM3-208ENST00000486758 PLAC8Q9NZF1 115 aa7.23□□□□□ -1.25
SHROOM3-208ENST00000486758 VPS13DQ5THJ4 4388 aa7.22□□□□□ -1.25
SHROOM3-208ENST00000486758 C9orf92A6NGG3 77 aa7.19□□□□□ -1.26
SHROOM3-208ENST00000486758 KRTAP13-1Q8IUC0 172 aa7.19□□□□□ -1.26
SHROOM3-208ENST00000486758 KRTAP10-1P60331 282 aa7.18□□□□□ -1.26
SHROOM3-208ENST00000486758 CRIPTQ9P021 101 aa7.18□□□□□ -1.26
SHROOM3-208ENST00000486758 SSBP3-AS1Q7Z2R9 100 aa7.17□□□□□ -1.26
SHROOM3-208ENST00000486758 DNAH11Q96DT5 4516 aa7.15□□□□□ -1.26
SHROOM3-208ENST00000486758 J3QL48 77 aa7.14□□□□□ -1.27
SHROOM3-208ENST00000486758 DMAC1Q96GE9 116 aa7.14□□□□□ -1.27
SHROOM3-208ENST00000486758 LINC00483Q53H64 154 aa7.12□□□□□ -1.27
SHROOM3-208ENST00000486758 FAT2Q9NYQ8 4349 aa7.12□□□□□ -1.27
SHROOM3-208ENST00000486758 ALMS1Q8TCU4 4167 aa7.12□□□□□ -1.27
SHROOM3-208ENST00000486758 K7ERS5 55 aa7.09□□□□□ -1.28
SHROOM3-208ENST00000486758 ASB16-AS1Q495Z4 193 aa7.09□□□□□ -1.28
SHROOM3-208ENST00000486758 A0A0A0MQY5 61 aa7.07□□□□□ -1.28
SHROOM3-208ENST00000486758 LRP1BQ9NZR2 4599 aa7.07□□□□□ -1.28
SHROOM3-208ENST00000486758 LINC00304Q8N9R0 145 aa7.06□□□□□ -1.28
SHROOM3-208ENST00000486758 SPATA8Q6RVD6 105 aa7.06□□□□□ -1.28
SHROOM3-208ENST00000486758 KRTAP13-2Q52LG2 175 aa7.04□□□□□ -1.28
SHROOM3-208ENST00000486758 HYDINQ4G0P3 5121 aa7.03□□□□□ -1.28
SHROOM3-208ENST00000486758 DNAH5Q8TE73 4624 aa6.99□□□□□ -1.29
SHROOM3-208ENST00000486758 VPS13BQ7Z7G8 4022 aa6.98□□□□□ -1.29
SHROOM3-208ENST00000486758 DYNC2H1Q8NCM8 4307 aaKnown RBP6.98□□□□□ -1.29
SHROOM3-208ENST00000486758 A0A0D9SG42 100 aa6.97□□□□□ -1.29
SHROOM3-208ENST00000486758 A0A1B0GU33 70 aa6.95□□□□□ -1.3
SHROOM3-208ENST00000486758 PKHD1P08F94 4074 aa6.95□□□□□ -1.3
SHROOM3-208ENST00000486758 SPINT4Q6UDR6 99 aa6.92□□□□□ -1.3
SHROOM3-208ENST00000486758 KRTAP13-3Q3SY46 172 aa6.92□□□□□ -1.3
SHROOM3-208ENST00000486758 ROMO1P60602 79 aa6.9□□□□□ -1.3
SHROOM3-208ENST00000486758 KRTAP1-4P0C5Y4 121 aa6.83□□□□□ -1.32
SHROOM3-208ENST00000486758 Q5VSD8 79 aa6.82□□□□□ -1.32
SHROOM3-208ENST00000486758 Q6ZSA8 131 aa6.82□□□□□ -1.32
SHROOM3-208ENST00000486758 FAT1Q14517 4588 aa6.82□□□□□ -1.32
SHROOM3-208ENST00000486758 H0YAA0 97 aa6.79□□□□□ -1.32
SHROOM3-208ENST00000486758 KRTAP25-1Q3LHN0 102 aa6.79□□□□□ -1.32
SHROOM3-208ENST00000486758 KMT2CQ8NEZ4 4911 aaKnown RBP6.79□□□□□ -1.32
SHROOM3-208ENST00000486758 H1FX-AS1Q4G0G2 97 aa6.78□□□□□ -1.32
SHROOM3-208ENST00000486758 PKD1P98161 4303 aa6.77□□□□□ -1.33
SHROOM3-208ENST00000486758 KRTAP16-1A8MUX0 517 aa6.77□□□□□ -1.33
SHROOM3-208ENST00000486758 MYCBP2O75592 4640 aa6.74□□□□□ -1.33
SHROOM3-208ENST00000486758 KRTAP17-1Q9BYP8 105 aa6.73□□□□□ -1.33
SHROOM3-208ENST00000486758 A8MUU9 505 aa6.72□□□□□ -1.33
SHROOM3-208ENST00000486758 P0C880 135 aa6.67□□□□□ -1.34
SHROOM3-208ENST00000486758 BIRC6Q9NR09 4857 aa6.66□□□□□ -1.34
SHROOM3-208ENST00000486758 COX6B2Q6YFQ2 88 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms