RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 PRR34Q9NV39 138 aa4.17□□□□□ -1.74
HDAC3-209ENST00000486618 CFC1BP0CG36 223 aa4.16□□□□□ -1.74
HDAC3-209ENST00000486618 KRTAP26-1Q6PEX3 210 aa4.16□□□□□ -1.74
HDAC3-209ENST00000486618 C22orf24Q9Y442 160 aa4.16□□□□□ -1.74
HDAC3-209ENST00000486618 CRIP1P50238 77 aa4.15□□□□□ -1.75
HDAC3-209ENST00000486618 CDC42SE2Q9NRR3 84 aa4.15□□□□□ -1.75
HDAC3-209ENST00000486618 IGKV2-24A0A0C4DH68 120 aa4.14□□□□□ -1.75
HDAC3-209ENST00000486618 A8MUU9 505 aa4.14□□□□□ -1.75
HDAC3-209ENST00000486618 COX6A2Q02221 97 aa4.14□□□□□ -1.75
HDAC3-209ENST00000486618 MIR22HGQ0VDD5 57 aa4.14□□□□□ -1.75
HDAC3-209ENST00000486618 A0A1B0GUV1 79 aa4.13□□□□□ -1.75
HDAC3-209ENST00000486618 LOC101927531A0A1B0GV80 90 aa4.13□□□□□ -1.75
HDAC3-209ENST00000486618 C11orf86A6NJI1 115 aa4.12□□□□□ -1.75
HDAC3-209ENST00000486618 D6R8Y8 96 aa4.12□□□□□ -1.75
HDAC3-209ENST00000486618 KRTAP10-6P60371 365 aaPredicted RBP4.12□□□□□ -1.75
HDAC3-209ENST00000486618 HIGD2BQ4VC39 106 aa4.12□□□□□ -1.75
HDAC3-209ENST00000486618 MUSTN1Q8IVN3 82 aa4.12□□□□□ -1.75
HDAC3-209ENST00000486618 C20orf166-AS1Q96NR2 134 aa4.12□□□□□ -1.75
HDAC3-209ENST00000486618 TRBV30A0A0K0K1B3 111 aa4.11□□□□□ -1.75
HDAC3-209ENST00000486618 H3BQ85 93 aa4.11□□□□□ -1.75
HDAC3-209ENST00000486618 M0QY20 66 aa4.1□□□□□ -1.75
HDAC3-209ENST00000486618 ELOF1P60002 83 aaKnown RBP4.1□□□□□ -1.75
HDAC3-209ENST00000486618 KRTAP10-7P60409 375 aaPredicted RBP4.1□□□□□ -1.75
HDAC3-209ENST00000486618 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.1□□□□□ -1.75
HDAC3-209ENST00000486618 SMIM29Q86T20 159 aa4.1□□□□□ -1.75
HDAC3-209ENST00000486618 PSORS1C2Q9UIG4 136 aa4.1□□□□□ -1.75
HDAC3-209ENST00000486618 IGLV4-60A0A075B6I1 120 aa4.09□□□□□ -1.75
HDAC3-209ENST00000486618 A0A096LNI7 61 aa4.09□□□□□ -1.75
HDAC3-209ENST00000486618 H7C423 109 aa4.09□□□□□ -1.75
HDAC3-209ENST00000486618 FCER1GP30273 86 aa4.09□□□□□ -1.75
HDAC3-209ENST00000486618 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.08□□□□□ -1.76
HDAC3-209ENST00000486618 TRBV7-4A0A0J9YYF1 115 aa4.08□□□□□ -1.76
HDAC3-209ENST00000486618 IGKV2-29A2NJV5 120 aaPredicted RBP4.08□□□□□ -1.76
HDAC3-209ENST00000486618 HIGD1CA8MV81 97 aa4.08□□□□□ -1.76
HDAC3-209ENST00000486618 I3L3M4 83 aa4.08□□□□□ -1.76
HDAC3-209ENST00000486618 DNAL4O96015 105 aa4.08□□□□□ -1.76
HDAC3-209ENST00000486618 Q1RN00 199 aa4.08□□□□□ -1.76
HDAC3-209ENST00000486618 Q8N377 158 aa4.08□□□□□ -1.76
HDAC3-209ENST00000486618 SPANXA2-OT1Q8N9U9 137 aa4.08□□□□□ -1.76
HDAC3-209ENST00000486618 GFRA4Q9GZZ7 299 aa4.08□□□□□ -1.76
HDAC3-209ENST00000486618 GVQW2A0A096LPI5 108 aaPredicted RBP4.07□□□□□ -1.76
HDAC3-209ENST00000486618 IGLV7-43P04211 117 aa4.07□□□□□ -1.76
HDAC3-209ENST00000486618 A8MU10 97 aa4.06□□□□□ -1.76
HDAC3-209ENST00000486618 PPP1R17O96001 155 aa4.06□□□□□ -1.76
HDAC3-209ENST00000486618 CFC1P0CG37 223 aa4.06□□□□□ -1.76
HDAC3-209ENST00000486618 SNURFQ9Y675 71 aa4.06□□□□□ -1.76
HDAC3-209ENST00000486618 LINC00483Q53H64 154 aa4.05□□□□□ -1.76
HDAC3-209ENST00000486618 PRR15LQ9BU68 103 aa4.05□□□□□ -1.76
HDAC3-209ENST00000486618 ORMDL1Q9P0S3 153 aa4.05□□□□□ -1.76
HDAC3-209ENST00000486618 LPAP08519 4548 aa4.05□□□□□ -1.76
HDAC3-209ENST00000486618 IGLV4-69A0A075B6H9 119 aa4.04□□□□□ -1.76
HDAC3-209ENST00000486618 LINC00959A0A1B0GUT2 108 aa4.04□□□□□ -1.76
HDAC3-209ENST00000486618 SMIM27A0A1W2PRY6 76 aa4.04□□□□□ -1.76
HDAC3-209ENST00000486618 C1orf137Q5JT78 98 aa4.04□□□□□ -1.76
HDAC3-209ENST00000486618 A0A1W2PNM2 257 aa4.03□□□□□ -1.76
HDAC3-209ENST00000486618 RPL39LQ96EH5 51 aaKnown RBP4.03□□□□□ -1.76
HDAC3-209ENST00000486618 AMELXQ99217 191 aa4.03□□□□□ -1.76
HDAC3-209ENST00000486618 V9GYV3 84 aa4.03□□□□□ -1.76
HDAC3-209ENST00000486618 A0A087WVE0 104 aa4.02□□□□□ -1.77
HDAC3-209ENST00000486618 TRAV12-1A0A0B4J245 112 aa4.02□□□□□ -1.77
HDAC3-209ENST00000486618 IGKV3D-7A0A0C4DH55 119 aa4.02□□□□□ -1.77
HDAC3-209ENST00000486618 A0A1B0GUT8 65 aa4.02□□□□□ -1.77
HDAC3-209ENST00000486618 P0C880 135 aa4.02□□□□□ -1.77
HDAC3-209ENST00000486618 KRTAP5-11Q6L8G4 156 aa4.02□□□□□ -1.77
HDAC3-209ENST00000486618 CSAG1Q6PB30 78 aa4.02□□□□□ -1.77
HDAC3-209ENST00000486618 DMAC1Q96GE9 116 aa4.02□□□□□ -1.77
HDAC3-209ENST00000486618 TRBV6-5A0A0K0K1A5 114 aa4.01□□□□□ -1.77
HDAC3-209ENST00000486618 A0A1W2PNN7 141 aa4.01□□□□□ -1.77
HDAC3-209ENST00000486618 NDUFA1O15239 70 aa4.01□□□□□ -1.77
HDAC3-209ENST00000486618 PLNP26678 52 aa4.01□□□□□ -1.77
HDAC3-209ENST00000486618 SPAG11BQ08648 103 aa4.01□□□□□ -1.77
HDAC3-209ENST00000486618 LINC00167Q96N53 147 aa4.01□□□□□ -1.77
HDAC3-209ENST00000486618 Q9BRP9 147 aa4.01□□□□□ -1.77
HDAC3-209ENST00000486618 SPAG11AQ6PDA7 123 aa4□□□□□ -1.77
HDAC3-209ENST00000486618 CNFNQ9BYD5 112 aa4□□□□□ -1.77
HDAC3-209ENST00000486618 FAT4Q6V0I7 4981 aa4□□□□□ -1.77
HDAC3-209ENST00000486618 NDUFB1O75438 58 aa3.99□□□□□ -1.77
HDAC3-209ENST00000486618 C9orf129Q5T035 196 aaKnown RBP3.99□□□□□ -1.77
HDAC3-209ENST00000486618 MUC2Q02817 5179 aa3.99□□□□□ -1.77
HDAC3-209ENST00000486618 A0A1B0GU33 70 aa3.98□□□□□ -1.77
HDAC3-209ENST00000486618 LITAFQ99732 161 aa3.98□□□□□ -1.77
HDAC3-209ENST00000486618 KRTAP1-4P0C5Y4 121 aa3.97□□□□□ -1.77
HDAC3-209ENST00000486618 NDUFAF8A1L188 74 aa3.96□□□□□ -1.78
HDAC3-209ENST00000486618 MT3P25713 68 aa3.96□□□□□ -1.78
HDAC3-209ENST00000486618 POLR2KP53803 58 aaKnown RBP3.96□□□□□ -1.78
HDAC3-209ENST00000486618 NREPQ16612 68 aa3.96□□□□□ -1.78
HDAC3-209ENST00000486618 DEFB116Q30KQ4 102 aa3.96□□□□□ -1.78
HDAC3-209ENST00000486618 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.95□□□□□ -1.78
HDAC3-209ENST00000486618 UBL5Q9BZL1 73 aa3.95□□□□□ -1.78
HDAC3-209ENST00000486618 TOMM7Q9P0U1 55 aa3.95□□□□□ -1.78
HDAC3-209ENST00000486618 F8VRH5 84 aa3.94□□□□□ -1.78
HDAC3-209ENST00000486618 Q5W150 140 aa3.94□□□□□ -1.78
HDAC3-209ENST00000486618 A0A096LNJ9 63 aa3.93□□□□□ -1.78
HDAC3-209ENST00000486618 K7EMI3 77 aa3.93□□□□□ -1.78
HDAC3-209ENST00000486618 KRTAP25-1Q3LHN0 102 aa3.93□□□□□ -1.78
HDAC3-209ENST00000486618 LINC01558Q9Y6Z2 57 aa3.93□□□□□ -1.78
HDAC3-209ENST00000486618 FAM168BA1KXE4 195 aa3.92□□□□□ -1.78
HDAC3-209ENST00000486618 RPL39P62891 51 aaKnown RBP3.92□□□□□ -1.78
HDAC3-209ENST00000486618 LCE1EQ5T753 118 aa3.92□□□□□ -1.78
HDAC3-209ENST00000486618 UNQ6190/PRO20217Q6UXQ8 127 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 139.8 ms