RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 RPL39LQ96EH5 51 aaKnown RBP3.13□□□□□ -1.91
CCDC39-205ENST00000485055 AMELXQ99217 191 aa3.13□□□□□ -1.91
CCDC39-205ENST00000485055 IGLV4-69A0A075B6H9 119 aa3.12□□□□□ -1.91
CCDC39-205ENST00000485055 KRTAP15-1Q3LI76 137 aa3.12□□□□□ -1.91
CCDC39-205ENST00000485055 A0A1W2PNM2 257 aa3.12□□□□□ -1.91
CCDC39-205ENST00000485055 SMIM2Q9BVW6 85 aa3.12□□□□□ -1.91
CCDC39-205ENST00000485055 A0A087WYN8 130 aa3.11□□□□□ -1.91
CCDC39-205ENST00000485055 TRBV30A0A0K0K1B3 111 aa3.11□□□□□ -1.91
CCDC39-205ENST00000485055 SMR3BP02814 79 aaPredicted RBP3.11□□□□□ -1.91
CCDC39-205ENST00000485055 ST20-AS1Q8NBB2 130 aa3.1□□□□□ -1.91
CCDC39-205ENST00000485055 BCE1O60756 84 aa3.1□□□□□ -1.91
CCDC39-205ENST00000485055 GAS8-AS1O95177 125 aa3.1□□□□□ -1.91
CCDC39-205ENST00000485055 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.1□□□□□ -1.91
CCDC39-205ENST00000485055 KRTAP9-8Q9BYQ0 159 aa3.1□□□□□ -1.91
CCDC39-205ENST00000485055 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.09□□□□□ -1.91
CCDC39-205ENST00000485055 IGKV2-29A2NJV5 120 aaPredicted RBP3.09□□□□□ -1.91
CCDC39-205ENST00000485055 IGIPA6NJ69 53 aa3.09□□□□□ -1.91
CCDC39-205ENST00000485055 KRTAP4-8Q9BYQ9 185 aa3.09□□□□□ -1.91
CCDC39-205ENST00000485055 SNURFQ9Y675 71 aa3.09□□□□□ -1.91
CCDC39-205ENST00000485055 A0A096LNI7 61 aa3.09□□□□□ -1.92
CCDC39-205ENST00000485055 C22orf24Q9Y442 160 aa3.09□□□□□ -1.92
CCDC39-205ENST00000485055 IGKV2-30P06310 120 aa3.08□□□□□ -1.92
CCDC39-205ENST00000485055 TRAV23DV6A0A075B6W5 121 aa3.08□□□□□ -1.92
CCDC39-205ENST00000485055 TRAV12-1A0A0B4J245 112 aa3.08□□□□□ -1.92
CCDC39-205ENST00000485055 Q8IZM0 81 aa3.08□□□□□ -1.92
CCDC39-205ENST00000485055 LEPROTL1O95214 131 aa3.07□□□□□ -1.92
CCDC39-205ENST00000485055 FCER1GP30273 86 aa3.07□□□□□ -1.92
CCDC39-205ENST00000485055 NDUFA1O15239 70 aa3.06□□□□□ -1.92
CCDC39-205ENST00000485055 COX6A2Q02221 97 aa3.06□□□□□ -1.92
CCDC39-205ENST00000485055 R4GN34 69 aa3.06□□□□□ -1.92
CCDC39-205ENST00000485055 HMCN2Q8NDA2 5059 aa3.06□□□□□ -1.92
CCDC39-205ENST00000485055 SRRM2Q9UQ35 2752 aaKnown RBP3.06□□□□□ -1.92
CCDC39-205ENST00000485055 D6R8Y8 96 aa3.06□□□□□ -1.92
CCDC39-205ENST00000485055 COX6CP09669 75 aa3.06□□□□□ -1.92
CCDC39-205ENST00000485055 PRR15LQ9BU68 103 aa3.06□□□□□ -1.92
CCDC39-205ENST00000485055 PSORS1C2Q9UIG4 136 aa3.06□□□□□ -1.92
CCDC39-205ENST00000485055 IFI27P40305 119 aaPredicted RBP3.06□□□□□ -1.92
CCDC39-205ENST00000485055 KRTAP7-1Q8IUC3 87 aa3.06□□□□□ -1.92
CCDC39-205ENST00000485055 A0A087WVE0 104 aa3.05□□□□□ -1.92
CCDC39-205ENST00000485055 Q6JHZ5 121 aa3.05□□□□□ -1.92
CCDC39-205ENST00000485055 CLPSL2Q6UWE3 100 aa3.05□□□□□ -1.92
CCDC39-205ENST00000485055 A0A1W2PNN7 141 aa3.05□□□□□ -1.92
CCDC39-205ENST00000485055 C6orf48Q9UBA6 75 aa3.05□□□□□ -1.92
CCDC39-205ENST00000485055 SPAG11BQ08648 103 aa3.04□□□□□ -1.92
CCDC39-205ENST00000485055 KRTAP1-4P0C5Y4 121 aa3.04□□□□□ -1.92
CCDC39-205ENST00000485055 COX17Q14061 63 aa3.04□□□□□ -1.92
CCDC39-205ENST00000485055 KRTAP5-3Q6L8H2 238 aa3.04□□□□□ -1.92
CCDC39-205ENST00000485055 C2orf82Q6UX34 121 aa3.04□□□□□ -1.92
CCDC39-205ENST00000485055 KRTAP13-1Q8IUC0 172 aa3.04□□□□□ -1.92
CCDC39-205ENST00000485055 MUSTN1Q8IVN3 82 aa3.04□□□□□ -1.92
CCDC39-205ENST00000485055 LOC101927531A0A1B0GV80 90 aa3.03□□□□□ -1.92
CCDC39-205ENST00000485055 HERC1Q15751 4861 aa3.03□□□□□ -1.92
CCDC39-205ENST00000485055 RPL39P62891 51 aaKnown RBP3.03□□□□□ -1.92
CCDC39-205ENST00000485055 HAMPP81172 84 aa3.03□□□□□ -1.92
CCDC39-205ENST00000485055 SPAG11AQ6PDA7 123 aa3.02□□□□□ -1.93
CCDC39-205ENST00000485055 F8VRH5 84 aa3.02□□□□□ -1.93
CCDC39-205ENST00000485055 LRP1Q07954 4544 aaKnown RBP3.02□□□□□ -1.93
CCDC39-205ENST00000485055 ORMDL1Q9P0S3 153 aa3.01□□□□□ -1.93
CCDC39-205ENST00000485055 UNQ6190/PRO20217Q6UXQ8 127 aa3□□□□□ -1.93
CCDC39-205ENST00000485055 DMBT1Q9UGM3 2413 aaPredicted RBP3□□□□□ -1.93
CCDC39-205ENST00000485055 KRTAP4-8A0A0G2JLE6 195 aa3□□□□□ -1.93
CCDC39-205ENST00000485055 C1orf137Q5JT78 98 aa3□□□□□ -1.93
CCDC39-205ENST00000485055 MUC17Q685J3 4493 aa3□□□□□ -1.93
CCDC39-205ENST00000485055 IGKV2D-30A0A075B6S6 120 aa2.99□□□□□ -1.93
CCDC39-205ENST00000485055 IGKV3D-7A0A0C4DH55 119 aa2.99□□□□□ -1.93
CCDC39-205ENST00000485055 KRTAP11-1Q8IUC1 163 aa2.99□□□□□ -1.93
CCDC39-205ENST00000485055 DMAC1Q96GE9 116 aa2.99□□□□□ -1.93
CCDC39-205ENST00000485055 IGKV3OR2-268A0A0C4DH90 116 aa2.98□□□□□ -1.93
CCDC39-205ENST00000485055 RPS29P62273 56 aaKnown RBP2.98□□□□□ -1.93
CCDC39-205ENST00000485055 ATXN8Q156A1 80 aa2.98□□□□□ -1.93
CCDC39-205ENST00000485055 COX7B2Q8TF08 81 aa2.98□□□□□ -1.93
CCDC39-205ENST00000485055 ZNF625Q96I27 306 aaPredicted RBP2.98□□□□□ -1.93
CCDC39-205ENST00000485055 CDKN2A-AS1Q9UH64 79 aa2.98□□□□□ -1.93
CCDC39-205ENST00000485055 IGKV2-24A0A0C4DH68 120 aa2.98□□□□□ -1.93
CCDC39-205ENST00000485055 HIGD2AQ9BW72 106 aa2.98□□□□□ -1.93
CCDC39-205ENST00000485055 TRBV7-4A0A0J9YYF1 115 aa2.97□□□□□ -1.93
CCDC39-205ENST00000485055 SPRR1AP35321 89 aa2.97□□□□□ -1.93
CCDC39-205ENST00000485055 A0A0G2JQZ4 141 aa2.97□□□□□ -1.93
CCDC39-205ENST00000485055 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.97□□□□□ -1.93
CCDC39-205ENST00000485055 KRTAP4-7Q9BYR0 210 aa2.97□□□□□ -1.93
CCDC39-205ENST00000485055 PRO2289Q9P1D8 64 aa2.97□□□□□ -1.93
CCDC39-205ENST00000485055 ELOF1P60002 83 aaKnown RBP2.96□□□□□ -1.94
CCDC39-205ENST00000485055 KRTAP9-2Q9BYQ4 174 aa2.96□□□□□ -1.94
CCDC39-205ENST00000485055 KRTAP9-6A0A140TA67 174 aa2.96□□□□□ -1.94
CCDC39-205ENST00000485055 Q9BRP9 147 aa2.96□□□□□ -1.94
CCDC39-205ENST00000485055 DNAL4O96015 105 aa2.95□□□□□ -1.94
CCDC39-205ENST00000485055 HRES1P13985 223 aa2.95□□□□□ -1.94
CCDC39-205ENST00000485055 KCNQ1DNQ9H478 68 aa2.94□□□□□ -1.94
CCDC39-205ENST00000485055 TPRXLQ17RH7 258 aa2.94□□□□□ -1.94
CCDC39-205ENST00000485055 ATP5EP2Q5VTU8 51 aa2.94□□□□□ -1.94
CCDC39-205ENST00000485055 FLG2Q5D862 2391 aaPredicted RBP2.94□□□□□ -1.94
CCDC39-205ENST00000485055 SPINT4Q6UDR6 99 aa2.92□□□□□ -1.94
CCDC39-205ENST00000485055 LINC01558Q9Y6Z2 57 aa2.92□□□□□ -1.94
CCDC39-205ENST00000485055 PDE6GP18545 87 aa2.91□□□□□ -1.94
CCDC39-205ENST00000485055 KRTAP13-2Q52LG2 175 aa2.91□□□□□ -1.94
CCDC39-205ENST00000485055 SPINK7P58062 85 aa2.91□□□□□ -1.94
CCDC39-205ENST00000485055 SPRR1BP22528 89 aa2.9□□□□□ -1.95
CCDC39-205ENST00000485055 PLNP26678 52 aa2.9□□□□□ -1.95
CCDC39-205ENST00000485055 LINC00304Q8N9R0 145 aa2.9□□□□□ -1.95
CCDC39-205ENST00000485055 SPRR4Q96PI1 79 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms